RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
GSK3B	2	1.020	-0.870				-1.128	1.091
CHD8	1	-1.310	2.760	-0.896	0.435	0.478	-1.819	-1.191
CHD8	1	-1.310	2.760	-1.168			0.026	0.297
CCND1	1	-1.820	3.470
SMO	1	-0.690	1.110		1.532
TCF7L1	1	-2.040	2.970	-0.741
FZD7	1	2.260	-1.160
HOXB6	1	0.140	-0.270			0.888	0.311	-0.017
HOXC6	1	2.050	-1.290			0.888	0.311	-0.017
DVL2	0	-0.050	0.580
PTPRU	0	0.620	0.040
LRP6	0	0.210	0.050
CDC42	0	-0.170	0.490	-0.597			-1.527	-1.013
CDC42	0	1.240	-0.940	-0.597			-1.527	-1.013
TCF7	0	1.040	-0.330	-0.741
TBL1X	0	-0.240	-0.140	0.090	-3.400	0.909	0.103	0.241
PTK7	0	-0.240	0.340				-0.232	0.174
WNT5A	0
STK11	0
SOX4	0	1.610	-0.930
GATA4	0	-0.670	0.350
MYC	0	0.170	0.550	-2.443	-0.949	-0.454		-1.290
LEF1	0	-0.710	0.790	-0.741
KDM6A	0	1.910	-0.840	-0.406	0.870
KDM6A	0	1.910	-0.840				-0.542	-0.153
TCF7L2	0	-0.550	0.790	-0.741
OTULIN	0	-0.520	0.500
DVL3	0	0.890	-0.290
PPAP2B	0	-0.750	0.840
DISC1	0	0.550	-0.420
FZD5	0	-0.880	0.520
PYGO2	0	-0.060	-0.940
T	0	0.200	-0.340	-0.755
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
HOXA5	0	0.030	-0.190			0.888	0.311	-0.017
HOXA6	0					0.888	0.311	-0.017
HOXA7	0	-0.250	0.230			0.888	0.311	-0.017
HOXB5	0	-0.180	0.680			0.888	0.311	-0.017
HOXB8	0					0.888	0.311	-0.017
HOXB9	0	0.790	-0.720			0.888	0.311	-0.017
HOXC5	0	0.530	-0.790			0.888	0.311	-0.017
HOXC8	0	-0.250	-0.230			0.888	0.311	-0.017
HOXC9	0	0.260	-0.820			0.888	0.311	-0.017
HOXD9	0	-1.260	1.800			0.888	0.311	-0.017
TBL1XR1	0	-0.370	0.750	0.090	-3.400	0.909	0.103	0.241
NKX2-5	0	-0.150	1.230		0.174	0.236
NKX2-5	0	-0.150	1.230				-0.123
UTY	0	0.400	-0.020	-0.406	0.870
UTY	0	0.400	-0.020				-0.542	-0.153
MED12	0	-0.180	-0.500				-1.501	-0.491
MYH6	0	-0.350	1.110
MYH6	0	-0.240	-0.750

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CCND1	Ubiquitylation	K33		-0.490	_AMLK(gl)AEETCAPSVSYFK_
CCND1	Ubiquitylation	K46	-1.016	-0.036	_AEETCAPSVSYFK(gl)CVQK_
CCND1	Ubiquitylation	K95	-0.733	-0.137	_FLSLEPVK(gl)K_
CCND1	Ubiquitylation	K96	-0.846	-0.155	_FLSLEPVKK(gl)_
CCND1	Ubiquitylation	K238		0.245	_VIK(gl)CDPDCLR_
CDC42	Ubiquitylation	K173	-1.839		_DDPSTIEK(gl)LAK_
CDC42	Ubiquitylation	K178	-0.801	-0.716	_NK(gl)QKPITPETAEK_
CDC42	Ubiquitylation	K180	-1.806		_QK(gl)PITPETAEK(gl)LAR_
CDC42	Ubiquitylation	K189	-1.082		_QKPITPETAEK(gl)LAR_
CDC42	Ubiquitylation	K198	0.550	1.159	_AVK(gl)YVECSALTQK_
CDC42	Ubiquitylation	K208	-0.937	0.038	_YVECSALTQK(gl)GLK_
CDC42	Ubiquitylation	K228	-2.488		_NVFDEAILAALEPPEPK(gl)K_
CDC42	Ubiquitylation	K229	-1.254		_NVFDEAILAALEPPEPKK(gl)_
CHD8	Phosphorylation	S557		-0.452	_VPVHQHS(ph)PSEPFLEKPVPDM(ox)TQVSGPNAQLVK_
CHD8	Ubiquitylation	K1766	0.498		_EQMK(gl)IEAAER_
CHD8	Phosphorylation	S1874	-0.088	-0.155	_TPFKDEIDEFANS(ph)PSEDKEESMEIHATGK_
CHD8	Phosphorylation	S1978	0.606	0.061	_M(ox)NYM(ox)QNHQAGAPAPSLS(ph)R_
CHD8	Phosphorylation	T1993	-1.383	-1.407	_T(ph)ASPLPLRPDAPVEKS(ph)PEETATQVPSLESLTLK_
CHD8	Phosphorylation	S1995	-0.690	-1.351	_TAS(ph)PLPLRPDAPVEK_
CHD8	Phosphorylation	S2008	-1.339	-1.407	_T(ph)ASPLPLRPDAPVEKS(ph)PEETATQVPSLESLTLK_
CHD8	Phosphorylation	S2046	0.427	0.449	_VS(ph)PSDTTPLVSR_
CHD8	Phosphorylation	S2519	-0.083	-0.552	_APGYPSS(ph)PVTTASGTTLR_
CHD8	Phosphorylation	S2533		-0.792	_RTS(ph)LSAEDAEVTK_
CHD8	Phosphorylation	S2559	-0.345	-0.513	_NIPS(ph)PGQLDPDTR_
CHD8	Phosphorylation	S2956	0.383	-0.248	_DGETLEGS(ph)DAEESLDK_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
DISC1	Ubiquitylation	K590	0.281		_SLNLSLK(gl)_
DVL2	Ubiquitylation	K343	0.846	-1.366	_DIVHK(gl)PGPIVLTVAK_
DVL3	Phosphorylation	S112	-0.787		_TGGIGDS(ph)RPPSFHPHAGGGSQENLDNDTETDSLVSAQR_
DVL3	Phosphorylation	S125	-0.854	-0.531	_TGGIGDSRPPSFHPHAGGGS(ph)QENLDNDTETDSLVSAQR_
FZD5	Ubiquitylation	K209		-0.563	_ESHPLYNK(gl)VR_
FZD7	Ubiquitylation	K569	0.551	0.319	_LSHSSK(gl)GETAV_
GATA4	Phosphorylation	S109	-0.520	-0.425	_FS(ph)FPGTTGSLAAAAAAAAAR_
GATA4	Phosphorylation	S407	-0.185	0.124	_LS(ph)PQGYASPVSQSPQTSSK_
GSK3B	Phosphorylation	S9	-0.483	0.010	_TTS(ph)FAESCKPVQQPSAFGSMK_
GSK3B	Ubiquitylation	K85		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Ubiquitylation	K86		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Phosphorylation	S215	0.296	0.477	_GEPNVS(ph)YICSR_
GSK3B	Phosphorylation	Y216	0.356	0.376	_GEPNVSY(ph)ICSR_
GSK3B	Phosphorylation	T390	2.800	2.527	_IQAAAST(ph)PTNATAASDANTGDR_
KDM6A	Phosphorylation	S866		-0.439	_TDNS(ph)VASSPSSAISTATPS(ph)PK_
KDM6A	Phosphorylation	S870	0.867	-0.013	_TDNSVASS(ph)PSSAISTATPSPK_
KDM6A	Phosphorylation	S872	0.757		_TDNSVASSPS(ph)SAISTATPSPK_
KDM6A	Phosphorylation	S876	-0.001		_TDNSVAS(ph)SPSSAIS(ph)TATPSPK_
KDM6A	Phosphorylation	T879	-0.585	0.018	_TDNSVASS(ph)PSSAISTAT(ph)PSPK_
KDM6A	Phosphorylation	S881	-0.285	-0.548	_TDNSVASS(ph)PSSAISTATPS(ph)PK_
LEF1	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_
LRP6	Ubiquitylation	K1443		-0.221	_GK(gl)SMISSLSIMGGSSGPPYDR_
MED12	Ubiquitylation	K429		-0.439	_EIEQQIK(gl)ER_
MED12	Ubiquitylation	K531		-0.272	_AMVVAKLLEK(gl)_
MED12	Phosphorylation	S635	-1.278	-0.801	_GDLAFGAPGPRPPS(ph)PFDDPADDPEHK_
MED12	Ubiquitylation	K1001		-1.092	_VK(gl)NTIYCNVEPSESNMR_
MED12	Ubiquitylation	K1661		-1.781	_DVITCEPQGSLIDTK(gl)GNK_
MED12	Ubiquitylation	K1682		-0.745	_EGLQVSTK(gl)QK_
MED12	Ubiquitylation	K1684		-0.960	_EGLQVSTK(gl)QK_
MYC	Phosphorylation	S20	-1.444	-1.145	_PLNVS(ph)FTNR_
MYC	Phosphorylation	T72	-1.699	-1.813	_FELLPT(ph)PPLS(ph)PSRR_
MYC	Phosphorylation	S76	-1.777	-1.435	_FELLPTPPLS(ph)PSR_
MYC	Phosphorylation	S81		0.459	_S(ph)GLCSPSYVAVTPFSLR_
MYC	Phosphorylation	S85	0.199	0.073	_SGLCS(ph)PSYVAVTPFSLR_
MYC	Ubiquitylation	K162	-2.475	-1.259	_LVSEK(gl)LASYQAAR_
MYC	Phosphorylation	S295		-0.903	_SESGS(ph)PSAGGHSKPPHSPLVLK_
MYC	Phosphorylation	S307		-1.486	_SES(ph)GSPSAGGHSKPPHS(ph)PLVLK_
MYC	Ubiquitylation	K340		-2.449	_VK(gl)LDSVR_
MYC	Ubiquitylation	K403		-3.432	_DQIPELENNEK(gl)APK_
MYH6	Ubiquitylation	K1446	-1.408	-0.411	_SNAAAAALDK(gl)K_
MYH6	Ubiquitylation	K1447	-1.408	-0.411	_SNAAAAALDK(gl)K_
OTULIN	Ubiquitylation	K64	-0.645		_AADEIEK(gl)EKELLIHER_
OTULIN	Ubiquitylation	K66	-0.645		_AADEIEK(gl)EKELLIHER_
OTULIN	Ubiquitylation	K94	-0.031	-0.564	_LSVAPEMDIMDYCKK(gl)_
PPAP2B	Ubiquitylation	K5	0.619	0.462	_(ac)MQNYK(gl)YDK_
PPAP2B	Ubiquitylation	K8	0.265	0.647	_YDK(gl)AIVPESK_
PPAP2B	Ubiquitylation	K15	-0.741	-0.668	_AIVPESK(gl)NGGSPALNNNPR_
PTK7	Ubiquitylation	K843	0.757	0.315	_SLQSK(gl)DEQQQLDFRR_
PTK7	Ubiquitylation	K906	0.519	-0.411	_LK(gl)SQPLSTK_
PTPRU	Phosphorylation	S853	-0.196	-0.039	_SGGVTEASSLLGGS(ph)PR_
PYGO2	Phosphorylation	S40		-0.276	_AGLQM(ox)KS(ph)PEKK_
SOX4	Phosphorylation	S354		-0.003	_SSAASSPAAGRS(ph)PADHR_
STK11	Phosphorylation	S31	0.437	0.073	_IDS(ph)TEVIYQPR_
STK11	Phosphorylation	T32	1.256	0.248	_IDS(ph)TEVIYQPR_
TBL1X	Ubiquitylation	K102	-0.183		_DK(gl)LAQQQAAAAAAAAAAASQQGSAK_
TBL1XR1	Ubiquitylation	K102	-0.183		_DK(gl)LAQQQAAAAAAAAAAASQQGSAK_
TCF7	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_
TCF7L1	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_
TCF7L2	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_
UTY	Phosphorylation	S866		-0.439	_TDNS(ph)VASSPSSAISTATPS(ph)PK_
UTY	Phosphorylation	S870	0.867	-0.013	_TDNSVASS(ph)PSSAISTATPSPK_
UTY	Phosphorylation	S872	0.757		_TDNSVASSPS(ph)SAISTATPSPK_
UTY	Phosphorylation	S876	-0.001		_TDNSVAS(ph)SPSSAIS(ph)TATPSPK_
UTY	Phosphorylation	T879	-0.585	0.018	_TDNSVASS(ph)PSSAISTAT(ph)PSPK_
UTY	Phosphorylation	S881	-0.285	-0.548	_TDNSVASS(ph)PSSAISTATPS(ph)PK_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_