RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CD276	2	0.360	-0.520
CD276	2	0.360	-0.520				-0.095	0.178
CNTN1	1	-1.210	1.700				-0.706	2.148
VCAN	1	0.760	-0.630
VCAN	1	0.760	-0.630
NRCAM	1	0.920	-0.800
VCAM1	1	1.250	-0.880				-0.412	-0.373
SDC2	1	-1.780	3.110
CADM1	1	-0.550	0.210		1.891		-0.186	0.114
HLA-B	1	0.000	-0.310				0.604	0.718
HLA-B	1	0.000	-0.310				-0.626
HLA-B	1	0.000	-0.310				1.149
HLA-B	1	0.000	-0.310
HLA-B	1	0.000	-0.310
CD99	0	-1.450	2.130
CDH1	0	0.150	0.280	-0.623
PVR	0	1.900	-1.110				-0.185	-0.149
GLG1	0	-0.920	0.880		-0.614	-0.283	0.926	0.784
ITGA6	0	-0.530	0.420	-0.133			-0.561	-0.048
PVRL1	0	0.150	0.290
ITGA4	0	-0.620	0.820
CD58	0	0.550	-0.430
SDC4	0	1.110	-0.650
PVRL2	0	-0.940	1.620				0.748	-0.029
ITGAV	0			-0.297			-0.090	0.262
PTPRF	0	1.070	-0.360				-0.194	0.365
ITGB1	0	0.390	-0.650				0.101	-0.036
JAM2	0	0.170	0.960
F11R	0	-0.710	0.530				0.514	0.505
CADM3	0	0.010	-0.310
CLDN1	0	-0.240	-0.450
JAM3	0	0.860	-0.200				0.644	0.464
NLGN2	0	0.140	0.230
ALCAM	0	0.270	-0.290				0.038	0.639
ALCAM	0	0.270	-0.290
CDH2	0	-0.110	-0.060				-1.092	-0.918
CDH4	0	1.000	-0.990				-1.092	-0.918
HLA-DQB1	0
OCLN	0	1.360	-0.180				0.052	0.302
OCLN	0	1.360	-0.180
MPZL1	0	0.900	-1.140
MPZL1	0	1.230	-0.540
MPZL1	0	1.660	-0.850
HLA-C	0						0.604	0.718
HLA-C	0
HLA-C	0
HLA-E	0	1.660	-0.940
HLA-A	0	0.790	-0.840				-0.626
HLA-C	0						-0.626
HLA-F	0	0.020	-0.190				-0.626
HLA-G	0	0.000	0.140				-0.626
HLA-A	0	0.790	-0.840				1.149
HLA-C	0						1.149
HLA-A	0	0.790	-0.840

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALCAM	Ubiquitylation	K572	1.248	0.878	_DLGNMEENK(gl)K_
CADM3	Phosphorylation	S192	-0.857	-0.995	_TFTVSS(ph)SVT(ph)FQVTR_
CADM3	Phosphorylation	T195	-0.857	-0.995	_TFTVSS(ph)SVT(ph)FQVTR_
CD276	Ubiquitylation	K521	-0.204	-0.111	_TALQPLK(gl)HSDSK_
CD276	Phosphorylation	S525	1.617	1.750	_HSDS(ph)KEDDGQEIA_
CD276	Ubiquitylation	K526	-0.204	-0.111	_TALQPLK(gl)HSDSKEDDGQEIA_
CD58	Ubiquitylation	K78		-0.023	_AFSSFK(gl)NR_
CD99	Ubiquitylation	K156	0.347		_LCFK(gl)ENAEQGEVDMESHR_
CLDN1	Phosphorylation	S206	-0.397	-0.443	_PAPSS(ph)GKDYV_
F11R	Phosphorylation	S288	0.335	0.373	_VIYSQPS(ph)AR_
F11R	Ubiquitylation	K296	0.445	0.876	_SEGEFK(gl)QTSSFLV_
HLA-A	Ubiquitylation	K92		-0.349	_NVK(gl)AQSQTDRVDLGTLR_
HLA-A	Ubiquitylation	K168		0.549	_SWTAADMAAQITK(gl)R_
HLA-A	Ubiquitylation	K346	-0.072	-0.211	_K(gl)GGSYTQAASSDSAQGSDVSLTACK(gl)V_
HLA-A	Ubiquitylation	K370	0.345	0.434	_K(gl)GGSYTQAASSDSAQGSDVSLTACK(gl)V_
HLA-B	Ubiquitylation	K177		-0.088	_YLENGKDK(gl)LER_
HLA-B	Ubiquitylation	K267		-0.118	_TFQK(gl)WAAVVVPSGEEQR_
HLA-C	Ubiquitylation	K120		-0.876	_GYDQSAYDGK(gl)DYIALNEDLR_
HLA-C	Ubiquitylation	K341	-0.900	-0.092	_SSGGK(gl)GGSCSQAACSNSAQGSDESLITCK_
HLA-DQB1	Ubiquitylation	K97		-0.619	_AVTPQGRPDAEYWNSQK(gl)EVLEGTR_
HLA-DQB1	Ubiquitylation	K257		-0.043	_SQK(gl)GLLH_
HLA-E	Ubiquitylation	K208		-0.144	_SWTAVDTAAQISEQK(gl)SNDASEAEHQR_
HLA-E	Ubiquitylation	K238		-0.512	_GK(gl)ETLLHLEPPK_
HLA-E	Ubiquitylation	K384		0.061	_GGSYSK(gl)AEWSDSAQGSESHSL_
ITGA4	Phosphorylation	S1021	-0.095	1.014	_RDS(ph)WSYINSK_
ITGA6	Ubiquitylation	K1116	0.715		_YIDNLEK(gl)K_
ITGA6	Ubiquitylation	K1117		1.453	_YIDNLEKK(gl)_
ITGAV	Ubiquitylation	K233		0.373	_YDPNVYSIK(gl)YNNQLATR_
ITGAV	Ubiquitylation	K360		0.294	_ASGDFQTTK(gl)LNGFEVFAR_
ITGAV	Ubiquitylation	K923		0.636	_GK(gl)SAILYVK_
ITGB1	Ubiquitylation	K774	0.402		_MNAK(gl)WDTGENPIYK_
ITGB1	Ubiquitylation	K784	-0.172	0.350	_WDTGENPIYK(gl)SAVTTVVNPK_
ITGB1	Ubiquitylation	K794	0.755	0.604	_SAVTTVVNPK(gl)YEGK_
JAM2	Ubiquitylation	K291	0.436	0.826	_ATTMSENDFK(gl)HTK_
MPZL1	Phosphorylation	S204	0.041	0.806	_DYTGCS(ph)TSESLSPVK_
MPZL1	Phosphorylation	T205	0.091	0.306	_DYTGCST(ph)SESLSPVK_
MPZL1	Phosphorylation	S206		0.581	_DYTGCSTS(ph)ESLSPVK_
MPZL1	Phosphorylation	S208	-0.484		_DYTGCSTSES(ph)LSPVK_
MPZL1	Phosphorylation	S210	0.120	0.160	_DYTGCSTSESLS(ph)PVK_
MPZL1	Ubiquitylation	K213	-0.850	-1.043	_DYTGCSTSESLSPVK(gl)QAPR_
MPZL1	Ubiquitylation	K218	-0.070	0.012	_K(gl)SPSDTEGLVK_
MPZL1	Phosphorylation	S219	0.202	0.573	_KS(ph)PSDTEGLVK_
MPZL1	Phosphorylation	S221		1.343	_KSPS(ph)DTEGLVK_
MPZL1	Phosphorylation	Y263		0.402	_SESVVY(ph)ADIR_
NLGN2	Ubiquitylation	K748	0.088		_ELPPEEELVSLQLK(gl)R_
NRCAM	Phosphorylation	S1299		4.018	_KEKEPAEGNESSEAPS(ph)PVNAMNSFV_
OCLN	Ubiquitylation	K330	-0.208	-0.513	_VDSPMAYSSNGK(gl)VNDKR_
OCLN	Phosphorylation	S341	-0.395	-0.095	_RFYPESS(ph)YK_
OCLN	Phosphorylation	T357	0.065	0.472	_STPVPEVVQELPLT(ph)SPVDDFR_
OCLN	Phosphorylation	S358	0.095	0.535	_STPVPEVVQELPLTS(ph)PVDDFR_
OCLN	Phosphorylation	S370	0.069	0.114	_YSS(ph)GGNFETPSK_
OCLN	Phosphorylation	T376	-1.372	-1.062	_YSSGGNFET(ph)PSK_
OCLN	Ubiquitylation	K379	-0.036	0.238	_YSSGGNFETPSK(gl)R_
OCLN	Phosphorylation	S408		1.405	_RTEQDHYETDYTTGGES(ph)CDELEEDWIR_
OCLN	Ubiquitylation	K488	0.113		_LKQVK(gl)GSADYK_
PTPRF	Ubiquitylation	K1650	-0.595	-1.027	_LLASSK(gl)AHTSR_
PTPRF	Ubiquitylation	K1665	-0.790		_FISANLPCNK(gl)FK_
PVRL1	Phosphorylation	S434		-0.333	_AGPLGGS(ph)SYEEEEEEEEGGGGGER_
PVRL2	Phosphorylation	T410		-1.005	_EQTLQGAEEDEDLEGPPSYKPPT(ph)PK_
PVRL2	Phosphorylation	S430		0.026	_LEAQEMPSQLFTLGAS(ph)EHSPLK_
PVRL2	Phosphorylation	S433		-0.325	_LEAQEMPSQLFTLGASEHS(ph)PLK_
SDC2	Ubiquitylation	K193	-0.696	-0.929	_KPSSAAYQK(gl)APTK_
SDC2	Ubiquitylation	K197	-0.160	0.647	_APTK(gl)EFYA_
SDC4	Ubiquitylation	K190	-0.979		_K(gl)APTNEFYA_
VCAM1	Ubiquitylation	K263	0.419	-0.113	_STLQIGK(gl)R_
VCAM1	Phosphorylation	S276		0.013	_RDANSSFFDNSSS(ph)PHLLDQLK_
VCAM1	Ubiquitylation	K293		-0.460	_NK(gl)INELELR_
VCAM1	Ubiquitylation	K326		-0.856	_FQELQLQLEKAK(gl)_
VCAM1	Ubiquitylation	K513		-1.965	_NIK(gl)QCLNQSQNFAEEMK_
VCAM1	Ubiquitylation	K555	-0.739	-0.237	_INQQENSLTLEK(gl)LK_
VCAM1	Ubiquitylation	K606		0.112	_ALLSALELKK(gl)_
VCAM1	Ubiquitylation	K657	-0.600	0.172	_TQQIK(gl)SHEYNER_
VCAM1	Ubiquitylation	K689		-0.011	_NLHNVLDSK(gl)SVEVETQK_
VCAM1	Ubiquitylation	K770	-1.636	-0.056	_SK(gl)DASLVTNEDHQR_
VCAM1	Ubiquitylation	K823	-1.207	-0.686	_LEADQSPK(gl)NSAILQNR_
VCAM1	Phosphorylation	S834		1.282	_VDS(ph)LEFSLESQK_
VCAM1	Ubiquitylation	K1022	-0.770		_SISELSDQYKQEK(gl)_
VCAM1	Phosphorylation	S1255		2.400	_GDLETSNLQDMQS(ph)QEISGLKDCEIDAEEK_
VCAM1	Phosphorylation	S1747		-0.145	_LQLQGLDLS(ph)SR_
VCAM1	Phosphorylation	S1750	-1.171	-0.117	_S(ph)LLGIDTEDAIQGR_
VCAM1	Phosphorylation	T1825		-0.475	_ITETGAVKPTGECSGEQSPDT(ph)NYEPPGEDK_
VCAM1	Ubiquitylation	K2069	-0.699		_GELDTMSKK(gl)_
VCAM1	Ubiquitylation	K2713		0.058	_MTAK(gl)ETELQR_
VCAM1	Ubiquitylation	K2739	-1.524		_TAELQEELSGEK(gl)NR_
VCAM1	Phosphorylation	S2996	-1.047	-1.005	_GS(ph)PLLGPVVPGPS(ph)PIPSVTEK_
VCAM1	Phosphorylation	S3007	-0.910	-2.059	_GS(ph)PLLGPVVPGPS(ph)PIPSVTEK_
VCAM1	Phosphorylation	S3119	-0.975	-0.328	_LALS(ph)PLSLGK_
VCAM1	Phosphorylation	S3150	1.391	1.078	_VAQRS(ph)PVDSGTILR_
VCAM1	Phosphorylation	S3175	1.052	0.884	_SVPVNNLPERS(ph)PTDSPR_
VCAN	Ubiquitylation	K98		2.161	_IGQDYK(gl)GR_
VCAN	Ubiquitylation	K347		3.178	_FDAYCFK(gl)R_
VCAN	Phosphorylation	S2130	0.600	0.798	_QEIESETTS(ph)EEQIQEEK_