bioLOGIC-db

bioLOGIC Data

Query: PTPRF

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
PTPRF	0	-1.451	1.070	-0.360				-0.194	0.365

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
PTPRF	Ubiquitylation	K1650	-0.595	-1.027	_LLASSK(gl)AHTSR_
PTPRF	Ubiquitylation	K1665	-0.790		_FISANLPCNK(gl)FK_

ProteomicsDB-PTPRF »

Protein-protein Interactions for PTPRF

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait CDKN2AIP	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait ATP6V0E1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait C12orf53	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait CEACAM21	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait CLU	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait HEPACAM2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait IL13RA2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait LRRIQ1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait MANSC1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait MRAP2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PCDHB16	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait PCDHGB1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SCN2B	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait TMEM30B	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait WFDC2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in PTPRF

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	Ig-like_dom	IPR007110	0.6
Category members	Ig_sub	IPR003599	0.43
Category members	Ig_sub2	IPR003598	0.21
Category members	Fibronectin_type3	IPR003961	0.19
Category members	Ig_I-set	IPR013098	0.13
Category members	Tyr_Pase_rcpt/non-rcpt	IPR000242	0
Category members	Tyr/Dual-sp_Pase	IPR000387	0
Category members	Tyr_Pase_cat	IPR003595	0
Category members	Prot-tyrosine_phosphatase-like	IPR029021	0

Protein complexes (CORUM database) featuring PTPRF

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)

Categories featuring PTPRF

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005887	integral to plasma membrane	Database	1.69
Category members	Pathway	Pathway_747	KEGG_ADHERENS_JUNCTION	0	0.43
Category members	GO Category	GO:0008201	heparin binding	Database	0.27
Category members	Pathway	Pathway_44	KEGG_INSULIN_SIGNALING_PATHWAY	0	0.21
Category members	Pathway	Pathway_1217	KEGG_CELL_ADHESION_MOLECULES_CAMS	0	0
Category members	GO Category	GO:0004725	protein tyrosine phosphatase activity	Database	0
Category members	GO Category	GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	Database	0
Category members	GO Category	GO:0006470	protein dephosphorylation	Database	0
Category members	GO Category	GO:0007155	cell adhesion	Database	0
Category members	GO Category	GO:0007185	transmembrane receptor protein tyrosine phosphatase signaling pathway	Database	0
Category members	GO Category	GO:0016311	dephosphorylation	Database	0
Category members	GO Category	GO:0016791	phosphatase activity	Database	0
Category members	GO Category	GO:0035335	peptidyl-tyrosine dephosphorylation	Database	0