RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
EYA4	2	-0.120	0.100
MTMR7	1	-1.960	3.930
MTMR2	1	-1.600	3.150
RNGTT	1	-0.250	0.070	-0.489		1.837	0.395	0.178
DUSP9	1	-2.590	5.800
PTPRG	1	0.610	-0.500				1.092	0.353
EYA3	1	-0.550	0.440
EYA3	1	-0.550	0.440
PTPRU	0	0.620	0.040
PTPN3	0	-0.300	0.200
PTPN18	0	-0.570	1.100
PTPN23	0	0.800	-0.570
SSH1	0	-0.780	1.560
MTMR3	0	0.400	-0.600
MTMR3	0	0.510	-0.480
CDKN3	0	0.480	-0.130
CDC25B	0	-0.180	0.320
MTMR8	0	0.300	-0.810
EYA1	0	-0.440	-0.140
TIMM50	0	0.710	-0.640	0.428	-0.608	-0.459	-1.171	-0.634
PTPRS	0	0.140	0.270				-0.194	0.365
DUSP3	0	0.360	-0.500
PTPMT1	0	0.090	0.270				0.126	-0.623
PTP4A1	0	0.520	-0.890				0.543	0.024
PTP4A1	0	0.520	-0.890
PTP4A1	0	0.520	-0.890
DNAJC6	0	-0.240	-0.090
DUSP1	0	0.290	-0.100
PTPN12	0	-0.330	-0.270
DUSP6	0	0.100	0.300
DUSP7	0	-0.270	0.070
PTPRA	0	0.890	-0.870				0.212	1.021
MTMR6	0	-0.340	0.720
SSH2	0	-0.270	0.300
PTPRF	0	1.070	-0.360				-0.194	0.365
ACP1	0	1.790	-1.100				-0.468
DUSP11	0	0.970	-0.380					-1.347
PTPN14	0	-0.710	0.480
PTPRR	0	-1.270	1.640		-0.083
PTPRD	0	-0.450	-0.070				-0.194	0.365
UBASH3B	0	0.990	-0.760
CDC25C	0	-0.100	0.100
DUSP14	0
PTPN13	0	0.510	-0.610				0.549	0.504
MTMR14	0	0.580	0.110		-0.226	-0.213
CDC25A	0	0.260	-0.100
PTPN9	0	0.750	0.260
SSH3	0	0.730	-0.200
PTPN2	0	1.210	-0.730
PTPN11	0	-0.210	-0.400	0.644			1.053	0.451
PTP4A2	0	-0.790	0.840				0.543	0.024
PTP4A2	0	-0.790	0.840
PTPN1	0	-0.150	0.310	1.066	0.459	0.251	0.322	0.379

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CDC25A	Ubiquitylation	K120		1.111	_LLGCSPALK(gl)R_
CDC25B	Phosphorylation	S117		-0.601	_EAFAQRPS(ph)SAPDLMCLSPDR_
CDC25B	Phosphorylation	S118		-0.832	_EAFAQRPS(ph)SAPDLMCLSPDR_
CDC25B	Phosphorylation	S241	-2.288	-1.005	_S(ph)VTPPEEQQEAEEPK_
CDC25B	Phosphorylation	T243	-1.445		_SVT(ph)PPEEQQEAEEPK_
CDC25B	Phosphorylation	S261		0.275	_S(ph)KSLCHDEIENLLDSDHR_
CDC25B	Phosphorylation	S263		0.184	_SKS(ph)LCHDEIENLLDSDHR_
CDC25C	Phosphorylation	S185		-0.645	_YLGS(ph)PITTVPK_
CDC25C	Phosphorylation	S233	-0.702	-0.657	_SPS(ph)MPENLNRPR_
CDC25C	Phosphorylation	S280	0.256	0.326	_TVS(ph)LCDITITQMLEEDSNQGHLIGDFSK_
CDKN3	Ubiquitylation	K86	-0.893	0.100	_GELSK(gl)YR_
DNAJC6	Phosphorylation	S570	0.276	0.762	_RSATSTSAS(ph)PTLR_
DUSP1	Ubiquitylation	K97		-0.523	_SAALDGAK(gl)R_
DUSP14	Ubiquitylation	K168	-0.849	-0.110	_QLFGK(gl)STVK_
DUSP14	Ubiquitylation	K187	-1.495	-1.004	_M(ox)VQTPYGIVPDVYEK(gl)ESR_
DUSP3	Ubiquitylation	K116	-0.586		_AADFIDQALAQK(gl)NGR_
DUSP6	Phosphorylation	S328	0.484	0.292	_SNIS(ph)PNFNFMGQLLDFER_
DUSP7	Phosphorylation	S328	0.484	0.292	_SNIS(ph)PNFNFMGQLLDFER_
DUSP9	Phosphorylation	S328	0.484	0.292	_SNIS(ph)PNFNFMGQLLDFER_
EYA1	Ubiquitylation	K513		-0.108	_NNVGGLLGPAK(gl)R_
EYA1	Ubiquitylation	K587		-1.219	_IGK(gl)ESCFER_
EYA3	Phosphorylation	S266	-1.629		_LSSGDPSTSPSLS(ph)QTTPSKDTDDQSR_
EYA3	Phosphorylation	S297	3.021		_ADATSS(ph)QDSELER_
EYA3	Ubiquitylation	K587		-1.219	_IGK(gl)ESCFER_
EYA4	Phosphorylation	S4	2.607	2.311	_(ac)M(ox)EDS(ph)QDLNEQSVK_
EYA4	Phosphorylation	S367	-1.041	-1.090	_NNPS(ph)PPPDSDLER_
EYA4	Ubiquitylation	K513		-0.108	_NNVGGLLGPAK(gl)R_
EYA4	Ubiquitylation	K587		-1.219	_IGK(gl)ESCFER_
MTMR14	Ubiquitylation	K201		0.453	_GYDIK(gl)LLR_
MTMR14	Phosphorylation	S576		0.117	_AVLHTDSS(ph)LPFSFPDELPNSCLLAALSDR_
MTMR14	Phosphorylation	S624		-0.264	_AVAPS(ph)PSGAIGGLLEQFAR_
MTMR2	Phosphorylation	S58	0.107	0.436	_SASVVSSDSISTSADNFS(ph)PDLR_
MTMR3	Ubiquitylation	K259	0.489		_NADDEHLVQSVAK(gl)ACASDSR_
MTMR3	Phosphorylation	T611	0.583	0.519	_T(ph)RSYDNLTTACDNTVPLASR_
MTMR3	Phosphorylation	S613	0.041	0.122	_S(ph)YDNLTTACDNTVPLASR_
MTMR3	Phosphorylation	S633	0.471	0.821	_RCS(ph)DPSLNEK_
MTMR3	Phosphorylation	S647	-0.030	0.268	_S(ph)LELSSLAGPGEDPLSADSLGKPTR_
MTMR3	Phosphorylation	T731	-0.553	0.016	_RKT(ph)PEASAIGLHQDPELGDAALR_
MTMR6	Phosphorylation	S556	-0.057	0.086	_ELLHS(ph)VHPESPNLK_
MTMR6	Phosphorylation	S561	-0.441	0.120	_ELLHSVHPES(ph)PNLK_
MTMR7	Phosphorylation	S593		0.065	_S(ph)PSQGDEDSALILTQDNLK_
MTMR7	Phosphorylation	S595	0.423	0.065	_SPS(ph)QGDEDSALILTQDNLK_
MTMR8	Ubiquitylation	K13		-1.591	_VENVK(gl)LVDR_
MTMR8	Ubiquitylation	K255		-0.134	_AAGK(gl)GYENEDNYANIR_
PTP4A1	Ubiquitylation	K15	-0.505		_MNRPAPVEVTYK(gl)NMR_
PTP4A1	Ubiquitylation	K141	1.064	1.099	_GAFNSK(gl)QLLYLEK_
PTP4A2	Ubiquitylation	K36	0.750		_K(gl)YGVTTLVR_
PTP4A2	Ubiquitylation	K141	1.064	1.099	_GAFNSK(gl)QLLYLEK_
PTPN1	Phosphorylation	S352		0.032	_GS(ph)PLNAAPYGIESMSQDTEVR_
PTPN1	Phosphorylation	S365	-0.247	0.956	_GSPLNAAPYGIESMS(ph)QDTEVR_
PTPN1	Phosphorylation	S378	1.462	1.262	_VVGGS(ph)LR_
PTPN11	Ubiquitylation	K124	0.562		_EAEK(gl)LLTEK_
PTPN12	Phosphorylation	S571	-1.186	-0.973	_TVSLTPS(ph)PTTQVETPDLVDHDNTSPLFR_
PTPN12	Phosphorylation	S588	-1.129	-1.279	_TVSLTPSPTTQVETPDLVDHDNTS(ph)PLFR_
PTPN12	Phosphorylation	S673	-0.767	-0.786	_DVDVSEDS(ph)PPPLPER_
PTPN13	Phosphorylation	S345	0.424	0.250	_YS(ph)DGSIALDIFGPQK_
PTPN13	Phosphorylation	S890	0.482	-0.006	_S(ph)LNLQAESVR_
PTPN13	Phosphorylation	S908	0.526	0.303	_AIS(ph)TGSLASSTLNK_
PTPN13	Phosphorylation	S936	0.498	0.321	_RLS(ph)CSELSLYQPLQNSSK_
PTPN13	Phosphorylation	S938	0.489	0.032	_LSCS(ph)ELSLYQPLQNSSK_
PTPN13	Phosphorylation	S1029	0.693	0.332	_SVAS(ph)LNRSPER_
PTPN13	Phosphorylation	S1033	0.266	0.445	_SVASLNRS(ph)PERR_
PTPN13	Phosphorylation	S1358	-0.423	-0.259	_TFSS(ph)SPPKPGDIFEVELAK_
PTPN13	Phosphorylation	S1359	-0.207	-0.067	_TFSSS(ph)PPKPGDIFEVELAK_
PTPN13	Phosphorylation	S1629	0.646	0.399	_DSSQPSCVEQSTS(ph)SDENEMSDK_
PTPN13	Phosphorylation	S1630	0.306	0.272	_DSSQPSCVEQSTSS(ph)DENEM(ox)SDK_
PTPN13	Phosphorylation	S2032	-0.758	-0.522	_GS(ph)PNLTLPK_
PTPN13	Phosphorylation	S2107		0.703	_TEDTDCDGS(ph)PLPEYFTEATK_
PTPN14	Phosphorylation	S312	-0.938		_ICTEQS(ph)NSPPPIR_
PTPN14	Phosphorylation	S314	-1.124	-0.564	_ICTEQSNS(ph)PPPIR_
PTPN14	Phosphorylation	S578	-0.193	-0.161	_PATS(ph)TPDLASHR_
PTPN14	Phosphorylation	T579	-0.068	-0.833	_PATST(ph)PDLASHR_
PTPN14	Phosphorylation	S594	0.146	0.213	_YVSGSS(ph)PDLVTR_
PTPN14	Phosphorylation	S642		0.429	_RHS(ph)LEVM(ox)NSM(ox)VR_
PTPN18	Phosphorylation	S341		-1.498	_SIS(ph)VPGSPGHAMADTYAVVQK_
PTPN2	Phosphorylation	S304	-0.873	-0.641	_ELSKEDLSPAFDHS(ph)PNK_
PTPN23	Ubiquitylation	K215	-0.317		_ISAQVVDYYK(gl)EACR_
PTPN23	Ubiquitylation	K288	-0.754	-0.795	_LAK(gl)GQPDTVQDALR_
PTPN23	Ubiquitylation	K500	-0.529		_EWAK(gl)YMEVHEK_
PTPN23	Phosphorylation	S1123	-1.317	-0.838	_GAAAADLLSSS(ph)PESQHGGTQSPGGGQPLLQPTK_
PTPN3	Phosphorylation	S359	0.897	0.812	_SLS(ph)VEHLETK_
PTPN9	Phosphorylation	S324		-0.357	_ENPVGTFHCSMS(ph)PGNLEK_
PTPN9	Ubiquitylation	K503	-0.448		_SK(gl)GQCPEPPIVVHCSAGIGR_
PTPRA	Ubiquitylation	K571		-0.065	_TGNLPANMK(gl)K_
PTPRA	Ubiquitylation	K572	0.007	-0.015	_TGNLPANMKK(gl)_
PTPRD	Ubiquitylation	K1650	-0.595	-1.027	_LLASSK(gl)AHTSR_
PTPRD	Ubiquitylation	K1665	-0.790		_FISANLPCNK(gl)FK_
PTPRF	Ubiquitylation	K1650	-0.595	-1.027	_LLASSK(gl)AHTSR_
PTPRF	Ubiquitylation	K1665	-0.790		_FISANLPCNK(gl)FK_
PTPRG	Ubiquitylation	K899	1.705		_LRPLPGK(gl)DSK_
PTPRG	Ubiquitylation	K1155	0.544		_QFK(gl)LVTQCNAK_
PTPRG	Phosphorylation	S1182	0.408	0.434	_NRNS(ph)SVVPSER_
PTPRS	Ubiquitylation	K1650	-0.595	-1.027	_LLASSK(gl)AHTSR_
PTPRS	Ubiquitylation	K1665	-0.790		_FISANLPCNK(gl)FK_
PTPRU	Phosphorylation	S853	-0.196	-0.039	_SGGVTEASSLLGGS(ph)PR_
SSH1	Phosphorylation	S937	0.799	0.728	_SSS(ph)SDSIHSVR_
SSH2	Phosphorylation	S514	0.350	0.184	_DITTS(ph)ADQIAEVK_
SSH3	Phosphorylation	S37		1.128	_RQS(ph)FAVLR_
TIMM50	Ubiquitylation	K167		-0.380	_AQGPQQQPGSEGPSYAK(gl)K_
TIMM50	Ubiquitylation	K168		-0.380	_AQGPQQQPGSEGPSYAK(gl)K_
TIMM50	Ubiquitylation	K353		-0.109	_VVVVDCK(gl)K_
TIMM50	Ubiquitylation	K354		-0.109	_VVVVDCK(gl)K_
TIMM50	Ubiquitylation	K434		0.302	_LAELSK(gl)SNK_
TIMM50	Ubiquitylation	K437	0.101	-0.071	_SNK(gl)QNLFLGSLTSR_
UBASH3B	Ubiquitylation	K21	-0.506	-0.681	_EELYSK(gl)VTPR_
UBASH3B	Ubiquitylation	K411	-0.160	-0.779	_YWLSQCFDAK(gl)GR_