RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
FYN	1	1.080	-1.100
FYN	1	1.080	-1.100
CASP8	1	1.120	-1.090
MYH9	1	-1.530	2.620	0.366	-0.040	-0.375	0.136	-0.183
CCND1	1	-1.820	3.470
EIF4G1	1	-1.660	2.810	0.765
EIF4G1	1	-1.660	2.810		-0.451	-0.932	-0.258	-0.331
RAC2	1	-1.520	2.710	0.486			-0.364	-0.568
CXADR	1	-0.550	1.230				0.333	1.691
DMD	1	0.960	-0.560				0.854	0.214
HLA-B	1	0.000	-0.310				0.604	0.718
HLA-B	1	0.000	-0.310				-0.626
HLA-B	1	0.000	-0.310				1.149
HLA-B	1	0.000	-0.310
HLA-B	1	0.000	-0.310
EIF4G3	0	-0.870	0.650				-0.609	-0.700
MYH7	0
ABL1	0	0.670	-0.070
MYH14	0	-0.990	1.070		0.436	-0.296	0.144	-0.154
CAV1	0	1.150	-0.150
CAV1	0	1.150	-0.150
CAV1	0	1.150	-0.150
EIF4G2	0	0.700	0.050		-0.629	-0.963
EIF4G2	0	0.700	0.050	1.131			-0.729	0.052
MYH10	0	0.740	-0.560	0.036			0.397	0.165
MYH10	0	0.740	-0.560		-0.265	-0.438
MYH11	0	0.030	0.200				-0.067	0.778
RAC1	0	-0.580	1.580	0.486			-0.364	-0.568
ABL2	0	0.050	-0.340
SGCB	0	-0.300	0.500
CASP3	0	0.570	-0.390
RAC3	0	0.210	0.290
CYCS	0	-0.020	-0.350				0.711	0.320
DAG1	0	0.210	-0.400
HLA-DQB1	0
LAMA2	0	1.640	-0.040
LAMA2	0	1.640	-0.040			-0.260
MYH6	0	-0.350	1.110
MYH6	0	-0.240	-0.750
HLA-C	0						0.604	0.718
HLA-C	0
HLA-C	0
HLA-E	0	1.660	-0.940
HLA-A	0	0.790	-0.840				-0.626
HLA-C	0						-0.626
HLA-F	0	0.020	-0.190				-0.626
HLA-G	0	0.000	0.140				-0.626
HLA-A	0	0.790	-0.840				1.149
HLA-C	0						1.149
HLA-A	0	0.790	-0.840

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ABL1	Phosphorylation	S1083	-1.131	-0.857	_GQGESDPLDHEPAVS(ph)PLLPR_
ABL1	Phosphorylation	S1134		0.293	_SSS(ph)FREMDGQPER_
ABL1	Phosphorylation	S1232	0.821	0.183	_SCS(ph)ASCVPHGAK_
ABL2	Phosphorylation	S618	-0.733		_GAQASS(ph)GSPALPR_
ABL2	Phosphorylation	S620	0.568	0.091	_GAQASSGS(ph)PALPR_
ABL2	Phosphorylation	S631	0.529	0.416	_DKS(ph)PSSLLEDAK_
ABL2	Phosphorylation	S634	0.322		_DKSPSS(ph)LLEDAK_
ABL2	Phosphorylation	S781	0.421		_S(ph)NSTSSM(ox)SSGLPEQDR_
ABL2	Phosphorylation	S783	-0.171		_SNS(ph)TSSMSSGLPEQDR_
ABL2	Phosphorylation	S817	0.028	0.055	_TVS(ph)TSSQPEENVDR_
ABL2	Phosphorylation	S936	-0.218	-0.547	_VPVLIS(ph)PTLK_
CASP3	Ubiquitylation	K11	-0.053	-0.687	_(ac)MENTENSVDSK(gl)SIK_
CASP3	Ubiquitylation	K14	-0.455	-0.687	_SIK(gl)NLEPK_
CASP3	Ubiquitylation	K57	-0.304	-1.817	_NFHK(gl)STGMTSR_
CASP3	Ubiquitylation	K82	-0.268	-0.605	_NLK(gl)YEVR_
CASP8	Ubiquitylation	K183	1.917		_IINDYEEFSK(gl)ER_
CASP8	Ubiquitylation	K461		-2.031	_NMGK(gl)QMPQPTFTLR_
CAV1	Ubiquitylation	K5	0.591	0.963	_(ac)SGGK(gl)YVDSEGHLYTVPIR_
CAV1	Phosphorylation	S6	0.836	0.688	_(ac)ADELS(ph)EKQVYDAHTK_
CAV1	Ubiquitylation	K8	0.244	0.734	_(ac)ADELSEK(gl)QVYDAHTK_
CAV1	Ubiquitylation	K26	0.724	0.894	_EQGNIYK(gl)PNNK_
CAV1	Ubiquitylation	K30	-0.008	0.317	_EQGNIYKPNNK(gl)AMADELSEK_
CAV1	Ubiquitylation	K39	0.690	1.170	_AMADELSEK(gl)QVYDAHTK_
CAV1	Phosphorylation	S76	0.607	0.527	_AMADELS(ph)EK_
CAV1	Ubiquitylation	K176		-0.259	_INLQK(gl)EI_
CCND1	Ubiquitylation	K33		-0.490	_AMLK(gl)AEETCAPSVSYFK_
CCND1	Ubiquitylation	K46	-1.016	-0.036	_AEETCAPSVSYFK(gl)CVQK_
CCND1	Ubiquitylation	K95	-0.733	-0.137	_FLSLEPVK(gl)K_
CCND1	Ubiquitylation	K96	-0.846	-0.155	_FLSLEPVKK(gl)_
CCND1	Ubiquitylation	K238		0.245	_VIK(gl)CDPDCLR_
CXADR	Phosphorylation	S332	-0.817	-0.804	_TPQS(ph)PTLPPAK_
CYCS	Ubiquitylation	K40		-2.265	_K(gl)TGQAPGYSYTAANK(gl)NK_
CYCS	Ubiquitylation	K54	-0.872	-1.922	_K(gl)TGQAPGYSYTAANK(gl)NK_
CYCS	Ubiquitylation	K56	-0.872	-1.922	_TGQAPGYSYTAANKNK(gl)_
CYCS	Ubiquitylation	K101		-1.859	_ADLIAYLKK(gl)_
DAG1	Ubiquitylation	K793		0.843	_LTLEDQATFIK(gl)K_
DAG1	Ubiquitylation	K794	0.899		_LTLEDQATFIKK(gl)_
DAG1	Ubiquitylation	K881	-0.342		_GSRPK(gl)NMTPYR_
DMD	Ubiquitylation	K3317	-0.200	-0.978	_CNICK(gl)ECPIIGFR_
DMD	Phosphorylation	S3623	2.940	0.225	_SDS(ph)SQPMLLR_
EIF4G1	Ubiquitylation	K627	-0.658		_SDQWK(gl)PLNLEEK_
EIF4G1	Ubiquitylation	K635	-1.721	-1.834	_SDQWKPLNLEEKK(gl)_
EIF4G1	Phosphorylation	T672		-1.605	_ANKT(ph)PLRPLDPTR_
EIF4G1	Ubiquitylation	K925	0.326		_SLGNIK(gl)FIGELFK_
EIF4G1	Ubiquitylation	K975	-0.759		_DLDFEK(gl)AKPR_
EIF4G1	Phosphorylation	T1098		-0.123	_IT(ph)KPGSIDSNNQLFAPGGR_
EIF4G1	Phosphorylation	S1102	0.238	-0.562	_ITKPGS(ph)IDSNNQLFAPGGR_
EIF4G1	Phosphorylation	S1117		-0.554	_ITKPGSIDSNNQLFAPGGRLS(ph)WGK_
EIF4G1	Phosphorylation	S1210	0.417	1.061	_S(ph)FSKEVEER_
EIF4G1	Phosphorylation	S1212	1.007	0.725	_RSFS(ph)KEVEER_
EIF4G1	Phosphorylation	S1234	0.676	1.054	_AAS(ph)LTEDRDR_
EIF4G1	Phosphorylation	T1236		1.002	_KAAS(ph)LTEDRDR_
EIF4G1	Phosphorylation	S1256	-1.072	-0.563	_REAALPPVS(ph)PLK_
EIF4G1	Phosphorylation	S1263	0.713	0.836	_AALS(ph)EEELEKK_
EIF4G2	Ubiquitylation	K260	0.068	-1.066	_NVDVYDK(gl)R_
EIF4G2	Ubiquitylation	K361	0.871	0.407	_MCSLMLSK(gl)ELPAR_
EIF4G2	Phosphorylation	S454		-1.517	_MDRDPLGGLADMFGQMPGS(ph)GIGTGPGVIQDRFSPTMGR_
EIF4G2	Phosphorylation	T458	-0.619	-1.448	_DPLGGLADMFGQMPGSGIGT(ph)GPGVIQDRFSPTM(ox)GR_
EIF4G2	Phosphorylation	S468	-0.235	-0.781	_FS(ph)PTMGR_
EIF4G2	Phosphorylation	T581	-1.576	-0.919	_TQT(ph)PPLGQTPQLGLK_
EIF4G3	Phosphorylation	S428	-0.198	-0.408	_SPS(ph)PVLR_
EIF4G3	Phosphorylation	S436		1.117	_LVLS(ph)GEKK_
EIF4G3	Phosphorylation	S691	-0.438	-0.303	_S(ph)PVPAQIAITVPK_
EIF4G3	Phosphorylation	S1352	0.654	0.877	_GGS(ph)SKDLLDNQSQEEQR_
EIF4G3	Phosphorylation	S1353	0.803	-0.554	_GGS(ph)SKDLLDNQSQEEQRR_
EIF4G3	Phosphorylation	S1605	0.606	0.554	_LDFIESDS(ph)PCSSEALSK_
FYN	Ubiquitylation	K13	0.286		_DKEATK(gl)LTEER_
FYN	Phosphorylation	S21	0.373	0.731	_DGS(ph)LNQSSGYR_
FYN	Ubiquitylation	K259		0.921	_LTDLSVK(gl)TK_
FYN	Ubiquitylation	K261	0.099		_LTDLSVKTK(gl)_
FYN	Ubiquitylation	K273	6.025		_SLCLEKK(gl)_
FYN	Ubiquitylation	K275	-0.521		_ESLQLIK(gl)R_
HLA-A	Ubiquitylation	K92		-0.349	_NVK(gl)AQSQTDRVDLGTLR_
HLA-A	Ubiquitylation	K168		0.549	_SWTAADMAAQITK(gl)R_
HLA-A	Ubiquitylation	K346	-0.072	-0.211	_K(gl)GGSYTQAASSDSAQGSDVSLTACK(gl)V_
HLA-A	Ubiquitylation	K370	0.345	0.434	_K(gl)GGSYTQAASSDSAQGSDVSLTACK(gl)V_
HLA-B	Ubiquitylation	K177		-0.088	_YLENGKDK(gl)LER_
HLA-B	Ubiquitylation	K267		-0.118	_TFQK(gl)WAAVVVPSGEEQR_
HLA-C	Ubiquitylation	K120		-0.876	_GYDQSAYDGK(gl)DYIALNEDLR_
HLA-C	Ubiquitylation	K341	-0.900	-0.092	_SSGGK(gl)GGSCSQAACSNSAQGSDESLITCK_
HLA-DQB1	Ubiquitylation	K97		-0.619	_AVTPQGRPDAEYWNSQK(gl)EVLEGTR_
HLA-DQB1	Ubiquitylation	K257		-0.043	_SQK(gl)GLLH_
HLA-E	Ubiquitylation	K208		-0.144	_SWTAVDTAAQISEQK(gl)SNDASEAEHQR_
HLA-E	Ubiquitylation	K238		-0.512	_GK(gl)ETLLHLEPPK_
HLA-E	Ubiquitylation	K384		0.061	_GGSYSK(gl)AEWSDSAQGSESHSL_
LAMA2	Ubiquitylation	K2038	-0.340		_LQAVK(gl)DKAR_
LAMA2	Ubiquitylation	K2040	-0.340		_LQAVK(gl)DKAR_
MYH10	Phosphorylation	S225		-0.296	_DHNIPQES(ph)PKPVK_
MYH10	Ubiquitylation	K256	0.402		_QLLQANPILESFGNAKTVK(gl)_
MYH10	Ubiquitylation	K899	-1.210		_QEEELQAK(gl)DEELLK_
MYH10	Phosphorylation	S1979	-0.233	-0.052	_GGPISFS(ph)SSR_
MYH10	Phosphorylation	S1980	-0.231		_GGPISFSS(ph)SR_
MYH10	Phosphorylation	S1981	-0.541	-0.089	_GGPISFSSS(ph)R_
MYH10	Phosphorylation	S1998	0.372	0.302	_QLHLEGASLELS(ph)DDDTESK_
MYH6	Ubiquitylation	K1446	-1.408	-0.411	_SNAAAAALDK(gl)K_
MYH6	Ubiquitylation	K1447	-1.408	-0.411	_SNAAAAALDK(gl)K_
MYH7	Ubiquitylation	K1446	-1.408	-0.411	_SNAAAAALDK(gl)K_
MYH7	Ubiquitylation	K1447	-1.408	-0.411	_SNAAAAALDK(gl)K_
MYH9	Ubiquitylation	K66	0.545		_VK(gl)VNKDDIQK_
MYH9	Ubiquitylation	K403	0.390	0.869	_DYVQK(gl)AQTK_
MYH9	Ubiquitylation	K682	-0.508		_AGK(gl)LDPHLVLDQLR_
MYH9	Ubiquitylation	K760	0.409	0.964	_IGQSK(gl)VFFR_
MYH9	Ubiquitylation	K821	-0.339		_NCAAYLK(gl)LR_
MYH9	Ubiquitylation	K856	-1.336		_EEELVK(gl)VR_
MYH9	Ubiquitylation	K860	-0.570	0.212	_VREK(gl)QLAAENR_
MYH9	Ubiquitylation	K1274	0.036		_VRTELADK(gl)VTK_
MYH9	Ubiquitylation	K1277	0.081		_TELADKVTK(gl)_
MYH9	Ubiquitylation	K1413	0.288		_VAAYDKLEK(gl)TK_
MYH9	Ubiquitylation	K1415		0.790	_VAAYDKLEKTK(gl)_
MYH9	Phosphorylation	S1943	0.168	0.290	_KGAGDGS(ph)DEEVDGKADGAEAK_
RAC1	Ubiquitylation	K115	-1.745	-0.215	_AK(gl)WYPEVR_
RAC1	Ubiquitylation	K142	0.492		_LDLRDDK(gl)DTIEK_
RAC1	Ubiquitylation	K152	0.099	-0.292	_K(gl)LTPITYPQGLAMAK_
RAC1	Ubiquitylation	K166	-0.981	-0.655	_LTPITYPQGLAMAK(gl)EIGAVK_
RAC1	Ubiquitylation	K172	1.026	0.412	_EIGAVK(gl)YLECSALTQR_
RAC1	Ubiquitylation	K185	-0.113	0.578	_GLK(gl)TVFDEAIR_
RAC1	Ubiquitylation	K202	-1.379	-1.447	_AVLCPPPVK(gl)KR_
RAC1	Ubiquitylation	K203	-1.708	-1.447	_AVLCPPPVKK(gl)_
RAC2	Ubiquitylation	K115	-1.745	-0.215	_AK(gl)WYPEVR_
RAC2	Ubiquitylation	K142	0.492		_LDLRDDK(gl)DTIEK_
RAC2	Ubiquitylation	K152	0.099	-0.292	_K(gl)LTPITYPQGLAMAK_
RAC2	Ubiquitylation	K166	-0.981	-0.655	_LTPITYPQGLAMAK(gl)EIGAVK_
RAC2	Ubiquitylation	K172	1.026	0.412	_EIGAVK(gl)YLECSALTQR_
RAC2	Ubiquitylation	K185	-0.113	0.578	_GLK(gl)TVFDEAIR_
RAC2	Ubiquitylation	K202	-1.379	-1.447	_AVLCPPPVK(gl)KR_
RAC2	Ubiquitylation	K203	-1.708	-1.447	_AVLCPPPVKK(gl)_
RAC3	Ubiquitylation	K153		-0.133	_EIGSVK(gl)YLECSALTQR_
RAC3	Ubiquitylation	K183		-1.447	_AVLCPPPVK(gl)K_
RAC3	Ubiquitylation	K184	-1.812	-1.447	_AVLCPPPVKK(gl)_
SGCB	Ubiquitylation	K202		0.493	_SLNVQK(gl)ASTER_
SGCB	Ubiquitylation	K219		0.060	_ITSNATSDLNIK(gl)VDGR_