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Query: SGCB

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SGCB 0 0.993 -0.300 0.500

PTM Sites:

Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SGCB Ubiquitylation K202 0.493 _SLNVQK(gl)ASTER_
SGCB Ubiquitylation K219 0.060 _ITSNATSDLNIK(gl)VDGR_

Background Information for SGCB:





Protein-protein Interactions for SGCB

Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CHRND Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HTR3A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SGCZ Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TCTN2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TMED6 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TSPAN17 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SGCB

Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Sarcoglycan IPR006875 0


Protein complexes (CORUM database) featuring SGCB

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 343 Sarcoglycan-sarcospan complex SG-SPN Database 0


Categories featuring SGCB

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0016021 integral to membrane Database 7.67
Category members GO Category GO:0005887 integral to plasma membrane Database 1.69
Category members GO Category GO:0005856 cytoskeleton Database 0.63
Category members GO Category GO:0042383 sarcolemma Database 0.36
Category members GO Category GO:0016010 dystrophin-associated glycoprotein complex Database 0.04
Category members Pathway Pathway_1007 KEGG_ARRHYTHMOGENIC_RIGHT_VENTRICULAR_CARDIOMYOPATHY_ARVC 0 0.03
Category members Pathway Pathway_1008 KEGG_HYPERTROPHIC_CARDIOMYOPATHY_HCM 0 0
Category members Pathway Pathway_1014 KEGG_VIRAL_MYOCARDITIS 0 0
Category members Pathway Pathway_262 KEGG_DILATED_CARDIOMYOPATHY 0 0
Category members GO Category GO:0007517 muscle organ development Database 0
Category members GO Category GO:0016012 sarcoglycan complex Database 0
Category members GO Category GO:0035051 cardiocyte differentiation Database 0


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