RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TNIK	2	-2.250	5.030	0.038			0.092	0.062
TNIK	2	-2.250	5.030				-0.852	-0.525
LDLRAP1	2	0.870	-0.890
EEA1	1	1.570	-0.620	1.098			0.020	0.177
ARFGEF2	1	-0.840	1.310	2.230
FAM109A	1	-1.780	2.690
NISCH	0	0.060	0.270				-0.247	0.240
RABEP1	0	1.320	-1.050
VAMP3	0	-0.800	0.690				0.418
VAMP3	0	-0.800	0.690
ATP9A	0	-1.060	1.330
ATP9B	0	-0.650	0.460
ATP11B	0	0.210	-0.230				-0.229	0.258
ATP11B	0	0.210	-0.230
ATP11A	0	0.980	-0.500
ATP11A	0	0.980	-0.500				-0.229	0.258
RAB10	0	-0.280	-0.200	-0.051			0.529	0.549
RAB1A	0	0.980	-0.460		1.641	-1.484	0.560	0.491
RAB11A	0	1.130	-0.130	0.324			0.697	0.458
RAB11A	0	1.130	-0.130
VAMP8	0	0.400	-0.770
RAB14	0	0.630	-0.150				0.314	0.321
RAB11FIP5	0	1.040	-0.620					-0.819
RAB10	0	-0.280	-0.200		1.641	-1.484	0.560	0.491
ITGB1	0	0.390	-0.650				0.101	-0.036
VIPAS39	0	-0.350	0.330
PANK1	0	0.690	-0.750
RABGEF1	0	0.010	0.630
GRIP1	0	-0.360	0.430
RAB11FIP1	0	-0.560	0.660	0.252			-0.160	-0.316
ABCG1	0	-0.770	2.080
ARF6	0	0.210	-0.560				0.456
AP1G1	0	-0.070	-0.460	-0.071			0.366	0.385
RAB8A	0	-0.300	0.550				0.568	0.278
RAB8A	0	-0.300	0.550		1.641	-1.484	0.560	0.491
DENND6A	0	1.610	-1.000
AATK	0	-0.220	0.730				0.624	-1.011
RAP2B	0	-1.290	2.220				0.185	0.477
RAB11B	0	-0.130	-0.140	0.324			0.697	0.458
RAB11B	0	-0.130	-0.140
VPS16	0	0.140	0.080				-0.408	-0.029
WASH4P	0

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ABCG1	Ubiquitylation	K446		-1.109	_GK(gl)VCNLVPYLR_
AP1G1	Ubiquitylation	K385	1.119	0.748	_DLDVSIK(gl)R_
AP1G1	Ubiquitylation	K595	-0.570	-0.014	_AVEYNALFKK(gl)_
ARFGEF2	Phosphorylation	S214	0.250		_ELEKPIQS(ph)KPQSPVIQAAAVS(ph)PK_
ARFGEF2	Phosphorylation	S218	-0.081	0.177	_ELEKPIQSKPQS(ph)PVIQAAAVS(ph)PK_
ARFGEF2	Phosphorylation	S227	-1.086	-0.941	_ELEKPIQSKPQS(ph)PVIQAAAVS(ph)PK_
ARFGEF2	Phosphorylation	S276	0.922	0.963	_GS(ph)SLSGTDDGAQEVVK_
ARFGEF2	Phosphorylation	S277	0.851	0.904	_GSS(ph)LSGTDDGAQEVVK_
ARFGEF2	Phosphorylation	S1528	-0.424	0.473	_GQSQLS(ph)NPTDDSWK_
ATP11A	Ubiquitylation	K135		0.285	_STVYIIENAK(gl)R_
ATP11A	Phosphorylation	S445	0.843	0.568	_GVTQEVDGLS(ph)QTDGTLTYFDK_
ATP11A	Ubiquitylation	K590	0.833	0.423	_VIEGK(gl)VDQIR_
ATP11A	Ubiquitylation	K614		-1.724	_TLCVAYK(gl)R_
ATP11A	Ubiquitylation	K716	-0.098	0.016	_NTQLLELTTK(gl)R_
ATP11A	Ubiquitylation	K809		-0.961	_AQIVK(gl)LIK_
ATP11A	Phosphorylation	S1116	-0.273	0.416	_ASDSLSARPS(ph)VRPLLLR_
ATP11B	Ubiquitylation	K135		0.285	_STVYIIENAK(gl)R_
ATP11B	Phosphorylation	S445	0.843	0.568	_GVTQEVDGLS(ph)QTDGTLTYFDK_
ATP11B	Ubiquitylation	K800		-0.207	_MAPLQK(gl)AK_
ATP11B	Phosphorylation	S1116	-0.273	0.416	_ASDSLSARPS(ph)VRPLLLR_
ATP11B	Phosphorylation	S1154		0.675	_SWS(ph)ASDPFYTNDR_
ATP9A	Ubiquitylation	K48	0.453	0.490	_TVWLGHPEK(gl)R_
ATP9A	Ubiquitylation	K404		0.778	_TGTLTQNEMIFK(gl)R_
ATP9A	Ubiquitylation	K447	-0.234	0.405	_GPTLTTK(gl)VR_
ATP9B	Ubiquitylation	K404		0.778	_TGTLTQNEMIFK(gl)R_
DENND6A	Ubiquitylation	K375		-1.607	_IGDLK(gl)PTGEIPK_
DENND6A	Ubiquitylation	K469	-2.162	-2.344	_SISPWK(gl)SPPQLR_
EEA1	Ubiquitylation	K100	0.234	1.002	_QEVQDLQASLK(gl)EEK_
EEA1	Ubiquitylation	K103	-0.344		_QEVQDLQASLKEEK(gl)_
EEA1	Phosphorylation	S354	1.047	1.214	_LS(ph)ASETSLHR_
EEA1	Ubiquitylation	K1029		1.686	_SQETFK(gl)QLQSDFYGR_
EEA1	Ubiquitylation	K1162	0.355		_EITNLK(gl)DAK_
EEA1	Ubiquitylation	K1178	-1.915		_LELQGK(gl)ADSLK_
EEA1	Ubiquitylation	K1225	-1.291		_LHSEIKEK(gl)_
EEA1	Ubiquitylation	K1312	-0.851		_LQTK(gl)VLELQR_
FAM109A	Phosphorylation	S179	-0.489	0.209	_RPS(ph)ALPPK_
FAM109A	Phosphorylation	S213	-0.236	-0.651	_RAS(ph)APHGPLDM(ox)APFAR_
GRIP1	Phosphorylation	S43	0.361	0.201	_RQS(ph)IPEEFK_
GRIP1	Phosphorylation	S847	0.159	0.098	_GSLS(ph)PVTKPR_
ITGB1	Ubiquitylation	K774	0.402		_MNAK(gl)WDTGENPIYK_
ITGB1	Ubiquitylation	K784	-0.172	0.350	_WDTGENPIYK(gl)SAVTTVVNPK_
ITGB1	Ubiquitylation	K794	0.755	0.604	_SAVTTVVNPK(gl)YEGK_
LDLRAP1	Ubiquitylation	K5	6.085	8.895	_(ac)MDALK(gl)SAGR_
LDLRAP1	Phosphorylation	S14	-0.662	0.149	_ALIRS(ph)PSLAK_
NISCH	Ubiquitylation	K942		0.996	_NSFK(gl)LSR_
NISCH	Ubiquitylation	K1009	0.484		_ASLQDLK(gl)TVVIAK_
NISCH	Phosphorylation	S1284	-0.365	-0.534	_TPS(ph)PEPVDKDFYSEFGNK_
NISCH	Ubiquitylation	K1303	0.675	0.227	_TTGK(gl)MENYELIHSSR_
PANK1	Phosphorylation	S215	-1.959	-1.665	_LPLLPELQPQPLLPQHDS(ph)PAK_
PANK1	Ubiquitylation	K285	-0.289		_YLTSNTAYGK(gl)TGIR_
RAB10	Ubiquitylation	K102	-0.105		_SFENISK(gl)WLR_
RAB10	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB10	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB10	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB11A	Ubiquitylation	K69	-0.533	0.554	_VVLIGDSGVGK(gl)SNLLSR_
RAB11A	Ubiquitylation	K103	-0.360	-0.185	_SIQVDGK(gl)TIK_
RAB11A	Ubiquitylation	K106		0.335	_SIQVDGKTIK(gl)_
RAB11A	Ubiquitylation	K224	-0.187	0.901	_IVSQK(gl)QMSDRR_
RAB11B	Ubiquitylation	K69	-0.533	0.554	_VVLIGDSGVGK(gl)SNLLSR_
RAB11B	Ubiquitylation	K103	-0.360	-0.185	_SIQVDGK(gl)TIK_
RAB11B	Ubiquitylation	K106		0.335	_SIQVDGKTIK(gl)_
RAB11FIP1	Phosphorylation	S199		0.020	_DSGSDTASAIIPSTTPS(ph)VDSDDESVVKDK_
RAB11FIP1	Phosphorylation	S202	0.412	0.117	_DSGSDTASAIIPSTTPSVDS(ph)DDESVVKDK_
RAB11FIP1	Phosphorylation	S206		0.063	_DSGSDTASAIIPSTTPSVDSDDES(ph)VVK_
RAB11FIP1	Phosphorylation	S356	0.785		_HLFS(ph)STENLAAGSWKEPAEGGGLSSDR_
RAB11FIP1	Phosphorylation	S357	0.581	0.569	_HLFSS(ph)TENLAAGSWKEPAEGGGLSSDR_
RAB11FIP1	Ubiquitylation	K387	0.499		_QLSESSTK(gl)DSLK_
RAB11FIP1	Phosphorylation	S435	1.020	0.756	_RSS(ph)LLSLMTGK_
RAB11FIP1	Ubiquitylation	K448	0.061		_DVAK(gl)GSEGENPLTVPGR_
RAB11FIP1	Phosphorylation	S500		-0.343	_QGS(ph)SLNLFEDVQITEPEAEPESK_
RAB11FIP1	Phosphorylation	S501	-0.575	-0.343	_QGSS(ph)LNLFEDVQITEPEAEPESK_
RAB11FIP1	Phosphorylation	S528	-0.770	-0.601	_SEPRPPIS(ph)SPR_
RAB11FIP1	Phosphorylation	S529	-0.700	-0.667	_SEPRPPISS(ph)PR_
RAB11FIP1	Phosphorylation	S545	0.106	0.382	_LEVS(ph)PEAQPTAR_
RAB11FIP1	Phosphorylation	S967		-0.553	_SPIMADLNLSLPSIPEVAS(ph)DDERIDQVEDDGDQVEDDGETAK_
RAB11FIP1	Ubiquitylation	K1212	-1.910		_VANCSLGTATIISENLNNEVMMKK(gl)_
RAB11FIP1	Ubiquitylation	K1278	-1.376	-0.051	_IPTQVGK(gl)K_
RAB11FIP5	Phosphorylation	S188	0.498	-1.279	_DKPRS(ph)PFSK_
RAB11FIP5	Phosphorylation	S307	0.920	0.806	_TYS(ph)DEANQMR_
RAB11FIP5	Phosphorylation	S393		0.820	_S(ph)NSSSEAVLGQEELSAQAK_
RAB11FIP5	Phosphorylation	S395	0.748	0.537	_SNS(ph)SSEAVLGQEELSAQAK_
RAB11FIP5	Phosphorylation	S494		0.084	_GGPILGAS(ph)PHHSSSGEEK_
RAB11FIP5	Ubiquitylation	K560	-0.629		_LK(gl)TVTSGSIQPVTQAPQAGQMVDTKR_
RAB11FIP5	Ubiquitylation	K583	-0.213	-0.841	_TVTSGSIQPVTQAPQAGQMVDTK(gl)R_
RAB11FIP5	Ubiquitylation	K586	0.485	0.189	_LK(gl)DSAVLDQSAK_
RAB14	Ubiquitylation	K170	-1.161		_TGENVEDAFLEAAK(gl)K_
RAB14	Ubiquitylation	K171	-1.161	-0.915	_TGENVEDAFLEAAKK(gl)_
RAB14	Ubiquitylation	K193		-0.640	_IYQNIQDGSLDLNAAESGVQHK(gl)PSAPQGGR_
RAB1A	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB1A	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB1A	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB8A	Ubiquitylation	K3	0.848		_(ac)AK(gl)TYDYLFK_
RAB8A	Ubiquitylation	K138	1.091		_ERGEK(gl)LALDYGIK_
RAB8A	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8A	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8A	Phosphorylation	S185	0.117	0.264	_KLEGNSPQGS(ph)NQGVK_
RAB8A	Ubiquitylation	K190	-0.573		_LEGNSPQGSNQGVK(gl)ITPDQQK_
RAB8A	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RABEP1	Ubiquitylation	K107	-0.436	0.507	_QEAIDEVK(gl)R_
RABEP1	Phosphorylation	S374	-0.114	-0.032	_GS(ph)VHSLDAGLLLPSGDPFSK_
RABEP1	Phosphorylation	S377	-0.376	-0.063	_GSVHS(ph)LDAGLLLPSGDPFSK_
RABEP1	Phosphorylation	S407	1.036	0.844	_AQS(ph)TDSLGTSGSLQSK_
RABEP1	Phosphorylation	S410	1.127	0.971	_RAQSTDS(ph)LGTSGSLQSK_
RABGEF1	Ubiquitylation	K263	-0.601	0.398	_LQREEEEAFASSQSSQGAQSLTFSK(gl)FEEK_
RABGEF1	Ubiquitylation	K281	0.077	0.349	_K(gl)FFSASSR_
RABGEF1	Ubiquitylation	K292	-1.150		_VGSK(gl)KEIQEAK_
RABGEF1	Ubiquitylation	K293	-0.236	0.148	_VGSKK(gl)EIQEAK_
RABGEF1	Ubiquitylation	K299	-1.563	-0.828	_EIQEAK(gl)APSPSINR_
RABGEF1	Ubiquitylation	K329	-0.156		_TFHK(gl)TGQEIYK_
RABGEF1	Ubiquitylation	K336	0.080		_TGQEIYK(gl)QTK_
RABGEF1	Ubiquitylation	K457		-0.737	_DLAIQK(gl)R_
TNIK	Phosphorylation	S680	0.363	0.497	_TTSIS(ph)PALAR_
TNIK	Phosphorylation	S707	0.024	-0.032	_LGSQPIRAS(ph)NPDLR_
TNIK	Phosphorylation	S764	0.214	-0.395	_ANS(ph)KS(ph)EGSPVLPHEPAK_
TNIK	Phosphorylation	S766	-0.772	-0.395	_S(ph)EGSPVLPHEPAK_
TNIK	Phosphorylation	S769	-0.527	-0.660	_SEGS(ph)PVLPHEPAK_
TNIK	Ubiquitylation	K824	-0.222		_IEETNRPMK(gl)K_
TNIK	Phosphorylation	S954		1.646	_VSTHS(ph)QEMDSGTEYGMGSSTK_
VAMP3	Phosphorylation	T9	0.318	-0.040	_(ac)STGPTAAT(ph)GSNR_
VAMP3	Phosphorylation	S11	0.474	0.952	_(ac)STGPTAATGS(ph)NR_
VAMP3	Ubiquitylation	K54	0.408	0.792	_VNVDK(gl)VLER_
VAMP3	Phosphorylation	S58	-0.407	0.612	_ADALQAGAS(ph)QFETSAAK_
VAMP3	Ubiquitylation	K61	0.558	0.387	_VLERDQK(gl)LSELDDR_
VAMP3	Phosphorylation	S63		0.374	_ADALQAGASQFETS(ph)AAK_
VAMP8	Ubiquitylation	K47	0.262	0.420	_NK(gl)TEDLEATSEHFK_
VAMP8	Phosphorylation	S55	0.753	0.547	_NKTEDLEATS(ph)EHFK_
VAMP8	Ubiquitylation	K59	-0.052		_NKTEDLEATSEHFK(gl)TTSQK_
VIPAS39	Phosphorylation	S147	1.367	1.257	_TRPGS(ph)FQSLSDALSDTPAK_
VPS16	Ubiquitylation	K510	-0.970	-1.022	_AINQK(gl)LGDTPGVSYSDIAAR_
WASH4P	Ubiquitylation	K151		-0.522	_ALQEK(gl)LK_
WASH4P	Ubiquitylation	K233		0.527	_LFDAPLSISK(gl)R_