RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
METTL3	3	2.390	-1.450	-2.087			0.828	-0.203
ERCC2	2	-0.590	1.060	-0.491		1.066
AK2	1	0.380	-0.820		1.981		0.248	-0.715
EXD2	1	2.260	-1.080				0.345	-0.005
ERH	1	-0.530	0.410	0.946	-0.917	1.124	0.054	0.191
BRIP1	1	0.650	-0.340
DCK	1	0.440	-0.560
CMPK1	1	-2.700	5.830
NUDT5	1	-0.740	2.020
CTPS1	1	0.800	-0.420	-0.335	1.508	-0.510	0.616	0.378
REV3L	0	-0.700	0.890
DDX11	0	-0.980	0.900
POLD1	0	1.600	-1.300	-0.932			0.362	0.283
POLD1	0	1.600	-1.300
SRBD1	0	-0.600	1.380		0.625	0.580	0.539	0.032
XRN2	0	1.050	-0.930	-2.506	-1.121	-0.161	-0.293	-0.304
SLC23A2	0	0.580	-0.620
DPYSL2	0
MTAP	0	1.310	-0.900
METTL4	0	0.040	-0.590		-0.104
POLA1	0	0.720	-0.610	0.594			0.355	0.027
PRPS2	0	-0.200	-0.080		-1.674	-0.947	0.360	0.296
PRPS2	0	-0.200	-0.080	-0.777
PRPS2	0	-0.200	-0.080
AK1	0	-1.080	1.190
SUPT6H	0	0.030	-0.700	1.341	-0.537	1.060	-1.444	0.939
SLC29A1	0						0.319	0.099
DGUOK	0	1.670	-0.860	-0.140
DGUOK	0	1.670	-0.860
DUT	0	-0.440	1.310
DUT	0	-0.440	1.310
DUT	0	-0.440	1.310
NDUFA10	0	-0.010	-0.040	-0.338			0.377	0.103
NDUFA10	0	-0.010	-0.040		-0.348
ATIC	0	-0.830	0.480				-0.329	0.553
PRPSAP2	0	-0.140	0.350	0.742	-1.568	-1.133	-0.179
PRPSAP2	0	-0.140	0.350
PRPSAP2	0	-0.140	0.350
METTL14	0	-0.010	0.420				-2.611	-0.831
PRPSAP1	0	-0.670	0.660
BPNT1	0	1.500	-0.960
WRN	0	-0.320	-0.170					0.180
TK1	0	0.610	-0.460
EXOSC10	0	0.160	-0.170		-0.327	-0.108	-0.734	-0.003
SLC29A2	0	0.460	-1.140
TYMS	0	-1.190	1.570
POLE	0				-0.404	0.128	-0.376	-0.212
POLE	0			-0.273
PNP	0	-0.590	0.270					-3.285

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AK1	Ubiquitylation	K99	0.474		_DAMVAK(gl)VNTSK_
AK2	Ubiquitylation	K28	-2.435	-1.363	_AVLLGPPGAGK(gl)GTQAPR_
AK2	Ubiquitylation	K63		-0.244	_AMVASGSELGKK(gl)_
AK2	Ubiquitylation	K65		-0.229	_LK(gl)ATMDAGK_
ATIC	Ubiquitylation	K195	-0.448		_K(gl)QYSKGVSQMPLR_
ATIC	Ubiquitylation	K199	-0.427	-0.247	_QYSK(gl)GVSQMPLR_
ATIC	Ubiquitylation	K397	0.429		_NNGVVDK(gl)SLFSNVVTK_
ATIC	Ubiquitylation	K406	0.213	0.405	_SLFSNVVTK(gl)NK_
ATIC	Ubiquitylation	K408	0.438	0.468	_SLFSNVVTKNK(gl)_
BPNT1	Ubiquitylation	K49	0.383	0.992	_TCATDLQTK(gl)ADR_
BPNT1	Ubiquitylation	K189		-0.452	_EVPAGK(gl)HIITTTR_
BPNT1	Ubiquitylation	K244		0.014	_ASAYVFASPGCK(gl)K_
BPNT1	Ubiquitylation	K245		0.014	_ASAYVFASPGCK(gl)K_
BRIP1	Phosphorylation	S112	0.807	1.459	_HFNYPS(ph)TPPSER_
BRIP1	Phosphorylation	T113	1.675		_HFNYPST(ph)PPSER_
BRIP1	Phosphorylation	S206		-0.381	_INSFS(ph)PQKPPGHCSR_
BRIP1	Ubiquitylation	K764		-0.462	_GK(gl)VSEGLDFSDDNAR_
BRIP1	Ubiquitylation	K797	-0.723	0.188	_DLQVELK(gl)R_
BRIP1	Phosphorylation	S1032	-0.789	-0.532	_ATPELGSSENSASS(ph)PPR_
BRIP1	Phosphorylation	S1237	0.424	0.355	_NFKPS(ph)PSK_
CMPK1	Ubiquitylation	K75	-0.120		_K(gl)NPDSQYGELIEK_
CMPK1	Ubiquitylation	K138	-0.030	0.576	_NQDNLQGWNK(gl)TMDGK_
CTPS1	Ubiquitylation	K84		0.695	_LTK(gl)DNNLTTGK_
CTPS1	Ubiquitylation	K381	-0.086	0.306	_GTEGK(gl)IQAIAWAR_
CTPS1	Ubiquitylation	K460	-0.506	-0.464	_TLFQTK(gl)NSVMR_
CTPS1	Ubiquitylation	K490	0.302		_K(gl)CLEEQGLK_
CTPS1	Phosphorylation	S571	-0.129	-0.106	_S(ph)GSSSPDSEITELKFPSINHD_
CTPS1	Phosphorylation	S574	-0.085	-0.063	_SGSS(ph)SPDSEITELKFPSINHD_
CTPS1	Phosphorylation	S575	0.142	-0.002	_SGSSS(ph)PDSEITELK_
CTPS1	Phosphorylation	S578	-0.269		_SGSSSPDS(ph)EITELKFPSINHD_
DCK	Phosphorylation	S15		3.826	_RSCPSFSAS(ph)SEGTR_
DCK	Phosphorylation	S74		2.649	_WCNVQSTQDEFEELTMS(ph)QK_
DDX11	Ubiquitylation	K173	0.779	-0.864	_VQLK(gl)YAAK_
DDX11	Ubiquitylation	K520		-0.747	_YCEK(gl)SMISR_
DDX11	Ubiquitylation	K830		-1.499	_SAELQEK(gl)MAYLDQTLPR_
DGUOK	Ubiquitylation	K135		-1.130	_K(gl)PVQIFER_
DGUOK	Ubiquitylation	K275		-1.478	_EVNTFVK(gl)NL_
DPYSL2	Phosphorylation	T565	-0.253	-0.187	_GLYDGPVCEVSVT(ph)PK_
DPYSL2	Ubiquitylation	K567	-1.870		_GLYDGPVCEVSVTPK(gl)TVTPASSAK_
DUT	Phosphorylation	S4	0.191	0.429	_PCS(ph)EETPAIS(ph)PSK_
DUT	Phosphorylation	S11	-0.548	-0.435	_PCSEETPAIS(ph)PSK_
DUT	Phosphorylation	S13	-0.394		_PCSEETPAISPS(ph)KR_
DUT	Ubiquitylation	K14	-0.852	-1.290	_PCSEETPAISPSK(gl)R_
DUT	Phosphorylation	S16	-0.212		_(ac)AAGGAAPETPAISPS(ph)K_
DUT	Phosphorylation	S88	-0.883	-0.900	_AGGS(ph)PAPGPETPAISPSK_
DUT	Phosphorylation	S99		-3.045	_AGGSPAPGPETPAIS(ph)PSK_
DUT	Phosphorylation	S101	-1.411		_AGGSPAPGPETPAISPS(ph)K_
ERCC2	Ubiquitylation	K268	5.973	1.957	_CQGNLETLQK(gl)TVLR_
ERCC2	Ubiquitylation	K507		-2.034	_GNDQVAISSK(gl)FETR_
ERH	Ubiquitylation	K12	-0.001	-0.445	_(ac)SHTILLVQPTK(gl)RPEGR_
ERH	Ubiquitylation	K41	1.353		_M(ox)YEEHLK(gl)R_
ERH	Ubiquitylation	K84		1.011	_ADTQTYQPYNK(gl)DWIK_
ERH	Ubiquitylation	K88		2.988	_ADTQTYQPYNKDWIK(gl)EK_
ERH	Ubiquitylation	K90	0.649	2.735	_EK(gl)IYVLLR_
EXOSC10	Ubiquitylation	K591		-1.148	_SEVAAGVK(gl)K_
EXOSC10	Ubiquitylation	K592		-1.148	_SEVAAGVK(gl)K_
EXOSC10	Ubiquitylation	K680		-1.926	_GPLTVAQKK(gl)_
EXOSC10	Ubiquitylation	K710		-1.867	_APVSQAAK(gl)FDPSTK_
EXOSC10	Ubiquitylation	K716		-2.215	_FDPSTK(gl)IYEISNR_
METTL14	Phosphorylation	S399	-0.559	-0.500	_LRPKS(ph)PPPK_
METTL3	Phosphorylation	S43	0.351	-0.104	_NPEAALS(ph)PTFR_
METTL3	Phosphorylation	S350	2.437	2.241	_DHTPS(ph)QELALTQSVGGDSSADR_
METTL3	Ubiquitylation	K459		-0.739	_VDEIIWVK(gl)TNQLQR_
METTL3	Ubiquitylation	K513		-1.187	_STSHK(gl)PDEIYGMIER_
MTAP	Ubiquitylation	K57	-0.883		_YVDTPFGK(gl)PSDALILGK_
MTAP	Ubiquitylation	K174		-0.133	_EVLIETAK(gl)K_
MTAP	Ubiquitylation	K175	0.382		_EVLIETAKK(gl)_
NUDT5	Phosphorylation	S3	0.294	1.301	_MES(ph)QEPTESSQNGK_
NUDT5	Phosphorylation	T7	0.639		_(ac)M(ox)ESQEPT(ph)ESSQNGK_
NUDT5	Ubiquitylation	K42	-0.827	-0.276	_TTYMDPTGK(gl)TR_
NUDT5	Ubiquitylation	K68	4.151		_K(gl)EQTADGVAVIPVLQR_
PNP	Ubiquitylation	K183	0.081	-0.409	_ALSTWK(gl)QMGEQR_
PNP	Ubiquitylation	K269	0.183		_ANHEEVLAAGK(gl)QAAQK_
POLA1	Phosphorylation	S192	-0.049	-0.187	_S(ph)IGASPNPFSVHTATAVPSGK_
POLA1	Phosphorylation	S196		-0.374	_RSIGAS(ph)PNPFSVHTATAVPSGK_
POLA1	Ubiquitylation	K1120		-0.317	_DTIVENIQK(gl)R_
POLD1	Ubiquitylation	K414		-1.315	_AQTLK(gl)VQTFPFLGR_
POLD1	Ubiquitylation	K439		-1.108	_DSSFQSK(gl)QTGRR_
POLD1	Ubiquitylation	K447		-1.286	_DTK(gl)VVSMVGR_
POLD1	Ubiquitylation	K554		-0.798	_GQQVK(gl)VVSQLLR_
POLD1	Ubiquitylation	K674	-1.082	-1.843	_TPTGDEFVK(gl)TSVR_
POLD1	Ubiquitylation	K758		-0.638	_TK(gl)QLVESK_
POLD1	Ubiquitylation	K853	-0.080	-1.776	_MDCK(gl)GLEAVR_
POLD1	Ubiquitylation	K911	-0.089	-0.915	_IDISQLVITK(gl)ELTR_
POLD1	Ubiquitylation	K923		-2.496	_AASDYAGK(gl)QAHVELAER_
POLD1	Ubiquitylation	K1033	0.475	-0.930	_VGGLLAFAK(gl)R_
POLD1	Ubiquitylation	K1065	-0.208		_ESELYQK(gl)EVSHLNALEER_
POLE	Ubiquitylation	K187		-0.801	_EISPAVKK(gl)_
POLE	Ubiquitylation	K436		-0.163	_DSYLPVGSHNLK(gl)AAAK_
POLE	Ubiquitylation	K1061		-1.582	_KLEDYGEQK(gl)STSISTAK_
POLE	Ubiquitylation	K1081		-1.440	_LAEFLGDQMVK(gl)DAGLSCR_
POLE	Ubiquitylation	K1385	-1.054	-0.957	_VAK(gl)AEEGASYR_
POLE	Ubiquitylation	K1573		-0.910	_AETDLK(gl)TICR_
POLE	Ubiquitylation	K1587		-0.722	_FLLAYK(gl)EER_
POLE	Ubiquitylation	K2121	0.432		_YVCK(gl)VLSLDTNITNQVNK_
POLE	Ubiquitylation	K2135	-0.740	-1.214	_VLSLDTNITNQVNK(gl)LNR_
PRPS2	Ubiquitylation	K212	-0.466	-0.920	_M(ox)VLVGDVK(gl)DR_
PRPSAP1	Ubiquitylation	K24	-0.285	-0.046	_VFSANSTAACTELAK(gl)R_
PRPSAP1	Ubiquitylation	K52	-0.423		_VEIK(gl)ESVR_
PRPSAP1	Ubiquitylation	K176	-0.467	-1.017	_NAVIVAK(gl)SPDAAKR_
PRPSAP1	Phosphorylation	S215	0.241	-0.086	_LGLAVIHGEAQCTELDM(ox)DDGRHS(ph)PPM(ox)VK_
PRPSAP1	Ubiquitylation	K238	-1.430	-1.796	_EK(gl)PPITVVGDVGGR_
PRPSAP2	Phosphorylation	T5	-0.038	-0.002	_(ac)M(ox)FCVT(ph)PPELETK_
PRPSAP2	Ubiquitylation	K188		-0.767	_NAVIVAK(gl)SPASAK_
PRPSAP2	Phosphorylation	S219	0.469	0.279	_LGIAVIHGEAQDAES(ph)DLVDGRHSPPMVR_
PRPSAP2	Phosphorylation	S227	-0.035	0.105	_LGIAVIHGEAQDAESDLVDGRHS(ph)PPMVR_
PRPSAP2	Ubiquitylation	K238	-1.430	-1.796	_EK(gl)PPITVVGDVGGR_
REV3L	Phosphorylation	S1724	0.363	0.417	_SGTLS(ph)PEIFEK_
SLC23A2	Ubiquitylation	K20	0.607	1.412	_NTTSK(gl)SMEAGSSTEGKYEDEAK_
SLC23A2	Ubiquitylation	K31	1.303		_SMEAGSSTEGK(gl)YEDEAK_
SLC29A1	Ubiquitylation	K318	1.026	-0.176	_YYQQLK(gl)LEGPGEQETK_
SLC29A1	Ubiquitylation	K328	0.330	0.059	_LEGPGEQETK(gl)LDLISKGEEPR_
SLC29A1	Phosphorylation	S333	0.295	0.229	_LDLIS(ph)KGEEPR_
SLC29A1	Ubiquitylation	K334	1.073	0.408	_LDLISK(gl)GEEPR_
SLC29A1	Ubiquitylation	K342	0.566	0.034	_AGK(gl)EESGVSVSNSQPTNESHSIK_
SLC29A2	Ubiquitylation	K226		0.214	_YYLANK(gl)SSQAQAQELETK_
SLC29A2	Ubiquitylation	K238	-0.712		_SSQAQAQELETK(gl)AELLQSDENGIPSSPQK_
SLC29A2	Phosphorylation	S252		-0.262	_AELLQSDENGIPSS(ph)PQK_
SUPT6H	Phosphorylation	S12	0.206	0.455	_(ac)SDFVESEAEES(ph)EEEYNDEGEVVPR_
SUPT6H	Ubiquitylation	K622	-0.598		_LNITPTK(gl)K_
SUPT6H	Ubiquitylation	K623	-0.598		_LNITPTK(gl)K_
SUPT6H	Phosphorylation	T1523	-0.262	-0.132	_DHYQDPVPGIT(ph)PSSSSR_
SUPT6H	Phosphorylation	T1530	-0.310	0.405	_T(ph)RTPASINATPANINLADLTR_
SUPT6H	Phosphorylation	T1532	0.190	0.451	_TRT(ph)PASINATPANINLADLTR_
SUPT6H	Phosphorylation	S1535	0.272		_TRTPAS(ph)INATPANINLADLTR_
SUPT6H	Phosphorylation	S1701		-0.630	_LTPRPS(ph)PSPMIESTPMSIAGDAT(ph)PLLDEMDR_
SUPT6H	Phosphorylation	T1718		-0.789	_LTPRPS(ph)PSPMIESTPMSIAGDAT(ph)PLLDEMDR_
TK1	Phosphorylation	S13	-1.350	-1.354	_(ac)SCINLPTVLPGS(ph)PSK_
TK1	Phosphorylation	S15	-1.567	-1.084	_SCINLPTVLPGSPS(ph)K_
TK1	Ubiquitylation	K16	-1.664		_(ac)SCINLPTVLPGSPSK(gl)TR_
TYMS	Ubiquitylation	K99		-0.992	_GSTNAK(gl)ELSSK_
TYMS	Ubiquitylation	K104		-0.543	_ELSSK(gl)GVK_
TYMS	Ubiquitylation	K169	-0.801	-0.836	_VIDTIK(gl)TNPDDRR_
WRN	Ubiquitylation	K134		0.717	_MLLENKAVK(gl)_
WRN	Phosphorylation	S1133	0.363	0.023	_SIMVQS(ph)PEK_
XRN2	Ubiquitylation	K132		0.183	_EGMEAAVEK(gl)QR_
XRN2	Phosphorylation	T439	-0.332	-1.539	_RDQPAFTPSGILT(ph)PHALGSR_
XRN2	Phosphorylation	S448	0.425	0.037	_NS(ph)PGSQVASNPR_
XRN2	Phosphorylation	S473	0.104	-0.751	_MQNNSSPS(ph)ISPNTSFTSDGSPSPLGGIK_
XRN2	Phosphorylation	S475		0.436	_MQNNSSPSIS(ph)PNTSFTSDGSPSPLGGIK_
XRN2	Ubiquitylation	K493	-1.223		_MQNNSSPSISPNTSFTSDGSPSPLGGIK(gl)R_
XRN2	Phosphorylation	S499	-1.444		_AEDS(ph)DSEPEPEDNVR_
XRN2	Ubiquitylation	K533	0.431		_NKFDVDAADEK(gl)FR_