RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CAT	2	2.260	-1.180				1.895	-0.238
ABCD3	1	0.430	-0.210				0.177	0.367
ABCD3	1	0.430	-0.210
MARC2	1	-1.780	3.790				-0.468	-0.400
MARC2	1	-1.780	3.790
HSDL2	1	-0.380	0.660				2.107
PEX1	1	-0.360	0.060				0.486	0.514
HSD17B4	1	0.150	-0.410	0.662	1.589		0.132	0.014
IDH1	1	0.390	-0.320				1.581	0.783
PEX14	1	-1.140	1.100				-0.395	0.423
TKT	1	0.500	-0.610
TKT	1	0.500	-0.610
NUDT19	1	1.760	-0.380		3.429	-1.892	0.902
CROT	0	-0.510	0.590
AGPS	0	1.630	-0.810	-0.249		-1.158	0.206	0.190
VIM	0	-0.880	0.930	0.524	0.219	-0.756
PEX3	0	-0.020	-0.330				0.666	0.365
ACAA1	0	0.340	-0.400				-0.095	-0.035
FAR2	0	0.560	0.000
ISOC1	0	0.780	-0.620				0.812	0.875
IDI1	0	-0.310	0.550	-0.903			0.896
ACSL4	0	1.120	-0.740	-0.154		-1.054	0.236	0.117
ALDH3A2	0	1.420	0.020	0.189	-0.686	-0.332	0.525	-0.106
DNM1L	0	0.850	0.090	0.362
MAVS	0	1.610	-0.380				-1.056	-0.630
CRAT	0	-0.500	-0.480					0.082
SLC25A17	0	0.570	-0.020				1.280	0.162
ACOT8	0	0.180	-0.020	-1.007			-1.529
LONP2	0	0.380	-0.520				-0.179	0.071
ECH1	0	0.690	-0.690		2.189	-2.148	1.250	1.353
GBF1	0	0.620	-0.640				-0.785	-0.409
TRIM37	0	0.060	0.540
PEX7	0	-0.110	0.040
EHHADH	0	0.390	-0.560				0.812	0.511
SCP2	0	-1.130	1.900	0.119			-0.044	-0.048
GNPAT	0	0.120	0.650				-1.085	0.016
GNPAT	0	0.120	0.650
IDE	0	-0.890	1.510					-1.202
PEX16	0	0.030	0.080				-1.135	0.469
PRDX5	0	0.930	-0.480		-1.143			1.450
HACL1	0	0.570	-0.190				0.582	-0.243
DCAF8	0	0.050	-0.070	-0.782		0.476
PNPLA8	0	0.270	-0.360	-0.075	0.032	-0.336	0.525	0.443
PEX5	0	-0.220	0.060	-0.723
SLC27A2	0	0.080	-0.710				0.200	1.382
SOD1	0	1.450	-1.250
TYSND1	0	-0.870	1.320				-1.213	-0.788
DHRS4	0	0.180	-0.130	-1.439
DHRS4	0	0.450	-0.560	-1.439
PEX10	0	0.420	-0.650
ACOX1	0	0.460	-0.300
PEX19	0	1.640	-1.220				-3.891	-2.630
KIAA0430	0	1.200	-0.780
MFF	0	-1.140	1.810
MFF	0	-1.140	1.810				-2.082	0.500
ZADH2	0	0.430	-0.170					1.037
TMEM173	0	-0.800	0.340
GSTK1	0	0.050	-0.370	-0.002			0.473	0.634
FAR1	0	1.970	-0.550	-1.201			-0.566	-0.107
FIS1	0	0.310	-0.460				-0.182	-0.304
ACAD11	0	1.060	-0.600	0.794	-1.471	-0.351	0.901	0.488
AMACR	0	-0.640	0.230

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ABCD3	Ubiquitylation	K6	-0.659	-0.529	_AAFSK(gl)YLTAR_
ABCD3	Ubiquitylation	K39	-1.169		_ALGLHGKK(gl)_
ABCD3	Ubiquitylation	K260	1.051	0.695	_MTITEQK(gl)YEGEYR_
ABCD3	Ubiquitylation	K533	2.395	-0.758	_DQVIYPDGREDQK(gl)R_
ACAD11	Phosphorylation	S181	-7.312	-3.426	_RQVS(ph)TWTK_
ACAD11	Phosphorylation	T182	-7.312	-3.426	_RQVS(ph)TWTK_
ACOX1	Phosphorylation	S26	-0.372		_DSASFNPELLTHILDGS(ph)PEK_
ACOX1	Ubiquitylation	K122		-0.820	_EK(gl)WLLSSK_
ACSL4	Ubiquitylation	K49	-1.745		_AK(gl)PTSDKPGSPYR_
ACSL4	Ubiquitylation	K54	-1.457		_AKPTSDK(gl)PGSPYR_
ACSL4	Ubiquitylation	K354	0.109	0.988	_IGYSSPLTLSDQSSK(gl)IK_
ACSL4	Ubiquitylation	K356	0.153	0.800	_IGYSSPLTLSDQSSKIK(gl)_
ACSL4	Ubiquitylation	K500	-1.017	-0.639	_LK(gl)DWQEGGYTINDKPNPR_
ACSL4	Ubiquitylation	K621	0.455	0.184	_SDQSYVISFVVPNQK(gl)R_
ACSL4	Ubiquitylation	K661	0.291	0.519	_EAANAM(ox)K(gl)LER_
ACSL4	Ubiquitylation	K670	-0.058	-0.343	_FEIPIK(gl)VR_
ACSL4	Ubiquitylation	K702	0.575		_NHYLK(gl)DIER_
AGPS	Phosphorylation	S65	-0.566	-0.723	_AAS(ph)AATAAPTATPAAQESGTIPK_
AMACR	Ubiquitylation	K200		-1.715	_TQK(gl)SSLWEAPR_
CROT	Ubiquitylation	K93	-0.391		_FQSGIGEK(gl)LHQK_
DCAF8	Ubiquitylation	K98	-0.813	0.507	_ICEQFEAETPTDSETTQK(gl)AR_
DCAF8	Phosphorylation	S253	-0.200	-0.102	_VHDRS(ph)EEEEEEEEEEEEEQPR_
DCAF8	Ubiquitylation	K428		-0.662	_VAELSATQCCK(gl)NTKR_
DCAF8	Ubiquitylation	K431	0.505		_VAELSATQCCKNTK(gl)_
DCAF8	Ubiquitylation	K475		-0.187	_QDRPASK(gl)LVVTK_
DCAF8	Ubiquitylation	K480		-0.101	_LVVTK(gl)EK_
DCAF8	Ubiquitylation	K592		-0.288	_NNATVK(gl)GVNFYGPK_
DNM1L	Ubiquitylation	K226	-0.801		_VPVGDQPK(gl)DIELQIR_
DNM1L	Ubiquitylation	K371		-0.203	_DCLPELK(gl)TR_
DNM1L	Phosphorylation	S610		0.467	_VPSALAPAS(ph)QEPSPAASAEADGK_
DNM1L	Phosphorylation	S614		-1.241	_VPSALAPASQEPS(ph)PAASAEADGK_
DNM1L	Phosphorylation	S671	-1.151	-1.028	_SKPIPIM(ox)PAS(ph)PQK_
ECH1	Ubiquitylation	K276		-1.216	_SPVAVQSTK(gl)VNLLYSR_
FAR1	Ubiquitylation	K29		0.817	_VLLEK(gl)LLR_
FAR2	Ubiquitylation	K379		0.174	_MTK(gl)LMNR_
FIS1	Ubiquitylation	K25	0.414	0.808	_FQSEK(gl)AAGSVSK_
FIS1	Ubiquitylation	K46	0.800	0.340	_SK(gl)YNDDIRK_
FIS1	Ubiquitylation	K108	-0.706		_GLLQTEPQNNQAK(gl)ELER_
GBF1	Ubiquitylation	K212	0.865	1.415	_NYVGTNMK(gl)K_
GBF1	Ubiquitylation	K606	0.112		_VLNSLTQQEKK(gl)_
GBF1	Ubiquitylation	K715	-0.719	1.164	_LLITGTEQFNQKPK(gl)_
GBF1	Phosphorylation	S1298	-0.288	-0.023	_ADAPDAGAQS(ph)DSELPSYHQNDVSLDR_
GBF1	Phosphorylation	S1300	-0.275	-0.056	_ADAPDAGAQSDS(ph)ELPSYHQNDVSLDR_
GBF1	Phosphorylation	T1317		0.742	_GYT(ph)SDSEVYTDHGRPGK_
GBF1	Phosphorylation	S1318	0.417	0.541	_GYTS(ph)DSEVYTDHGRPGK_
GBF1	Ubiquitylation	K1529		-0.652	_HLETGGQK(gl)IEADSR_
GBF1	Phosphorylation	S1773		-1.189	_TPGHPPPPEIPSELGACDFEKPES(ph)PR_
GNPAT	Ubiquitylation	K62	0.246	0.762	_HVSDLK(gl)FAMK_
GNPAT	Ubiquitylation	K159		-0.813	_VCVNEEGIQK(gl)LQR_
GNPAT	Ubiquitylation	K264		-1.065	_SAK(gl)TLTPK_
GNPAT	Ubiquitylation	K325	-1.149	-0.511	_ESTTGLLK(gl)AR_
HACL1	Ubiquitylation	K234		-0.466	_GAAYAHAEESIK(gl)K_
HACL1	Ubiquitylation	K365		-0.881	_SNEAASK(gl)ELASKK_
HACL1	Ubiquitylation	K540	-1.467		_GYFVQTPEELQK(gl)SLR_
HSD17B4	Ubiquitylation	K68	-0.723		_GGK(gl)AVANYDSVEEGEK_
IDE	Ubiquitylation	K308	-0.121	0.325	_IVPIK(gl)DIR_
IDH1	Ubiquitylation	K58	-0.442	0.097	_DATNDQVTK(gl)DAAEAIKK_
IDI1	Ubiquitylation	K37		-0.752	_K(gl)NCHLNENIEK_
IDI1	Ubiquitylation	K176		-0.482	_SYCYVSK(gl)EELK_
KIAA0430	Phosphorylation	S1091	0.395	0.048	_S(ph)KSPVGNPQLIQFSR_
KIAA0430	Phosphorylation	S1093	-0.203	0.200	_SKS(ph)PVGNPQLIQFSR_
MARC2	Ubiquitylation	K66		0.127	_LWIYPVK(gl)SCK_
MARC2	Ubiquitylation	K69		-0.329	_SCK(gl)GVPVSEAECTAMGLR_
MARC2	Ubiquitylation	K70		-0.329	_SCK(gl)GVPVSEAECTAMGLR_
MARC2	Ubiquitylation	K148	-1.260		_TPTTNAVHK(gl)CR_
MARC2	Ubiquitylation	K156		-0.101	_IFGLDIK(gl)GR_
MARC2	Ubiquitylation	K187		-0.504	_LVQFETNMK(gl)GR_
MAVS	Phosphorylation	S152	0.146	-0.466	_EKEPSYPMPVQETQAPES(ph)PGENSEQALQTLSPR_
MAVS	Phosphorylation	S165		-0.888	_EKEPSYPMPVQETQAPESPGENSEQALQTLS(ph)PR_
MAVS	Phosphorylation	S222	1.349	1.006	_GPVS(ph)PSVSFQPLAR_
MAVS	Ubiquitylation	K362	0.082		_AGMVPSK(gl)VPTSMVLTK_
MFF	Phosphorylation	S29	-0.273	0.074	_NDS(ph)LVTPSPQQAR_
MFF	Phosphorylation	T137	-0.178	0.023	_VLTLSERPLDFLDLERPPT(ph)TPQNEEIR_
MFF	Phosphorylation	T138	-0.178	-0.038	_VLTLSERPLDFLDLERPPT(ph)TPQNEEIR_
PEX1	Ubiquitylation	K349	0.125		_TK(gl)QNVLSPEK_
PEX1	Ubiquitylation	K368	0.607	0.123	_QMSEPLDQK(gl)K_
PEX1	Ubiquitylation	K369		-0.129	_QMSEPLDQKK(gl)_
PEX1	Phosphorylation	T1179	2.277	0.592	_T(ph)ASQEGCQELTQEQR_
PEX1	Phosphorylation	S1181	1.820	1.458	_TAS(ph)QEGCQELTQEQR_
PEX1	Phosphorylation	S1211	0.326	-0.091	_SQS(ph)GEDESMNQPGPIK_
PEX10	Ubiquitylation	K17		-0.444	_AAQK(gl)DEYYR_
PEX14	Phosphorylation	S232		1.626	_RQFPPS(ph)PSAPK_
PEX14	Phosphorylation	S234		3.951	_RQFPPSPS(ph)APK_
PEX19	Phosphorylation	S35		-1.246	_AKPS(ph)PAPPSTTTAPDASGPQK_
PEX19	Ubiquitylation	K52	-2.504	-2.347	_AKPSPAPPSTTTAPDASGPQK(gl)R_
PEX19	Ubiquitylation	K60	-0.279	0.300	_SPGDTAK(gl)DALFASQEK_
PEX19	Phosphorylation	S147	-0.230	0.253	_NATDLQNSS(ph)MSEEELTK_
PEX3	Ubiquitylation	K262	0.335	0.168	_DITTIK(gl)LLNETR_
PEX5	Ubiquitylation	K238	-0.622		_LANSEFLK(gl)FVR_
PEX7	Ubiquitylation	K186	-0.344		_IWDVK(gl)AAGVR_
SCP2	Ubiquitylation	K438	0.328		_ANLVFK(gl)EIEK_
SCP2	Ubiquitylation	K454	0.420		_KLEEEGEQFVKK(gl)_
SCP2	Ubiquitylation	K462	-0.147		_IGGIFAFK(gl)_
SLC25A17	Ubiquitylation	K42		0.106	_LQVDEK(gl)R_
SLC25A17	Ubiquitylation	K44	-0.499		_LQVDEKRK(gl)_
SLC25A17	Ubiquitylation	K130		-0.564	_LK(gl)LQGAK_
SLC25A17	Ubiquitylation	K135		-0.478	_LQGAK(gl)FR_
SLC27A2	Ubiquitylation	K62		1.069	_AFLEK(gl)AR_
SLC27A2	Ubiquitylation	K390		-0.901	_VNYLQKK(gl)_
SLC27A2	Ubiquitylation	K419	-0.252	0.124	_VPK(gl)GEVGLLVCK_
SOD1	Ubiquitylation	K4	-0.329		_(ac)ATK(gl)AVCVLK_
SOD1	Ubiquitylation	K10	0.211	0.582	_AVCVLK(gl)GDGPVQGIINFEQK_
SOD1	Ubiquitylation	K24	-0.435	-0.086	_GDGPVQGIINFEQK(gl)ESNGPVK_
SOD1	Ubiquitylation	K31	-0.109	0.332	_ESNGPVK(gl)VWGSIK_
SOD1	Phosphorylation	S99		0.405	_HVGDLGNVTADKDGVADVS(ph)IEDSVISLSGDHCIIGR_
SOD1	Ubiquitylation	K123	0.352	0.004	_TLVVHEK(gl)ADDLGK_
SOD1	Ubiquitylation	K129	0.143		_ADDLGK(gl)GGNEESTK_
SOD1	Ubiquitylation	K137	0.464	0.934	_ADDLGKGGNEESTK(gl)TGNAGSR_
TKT	Ubiquitylation	K6	0.465	0.423	_(ac)MESYHK(gl)PDQQK_
TKT	Ubiquitylation	K16	-0.080	1.078	_LQALK(gl)DTANR_
TKT	Ubiquitylation	K204	-0.765	-0.280	_LGQSDPAPLQHQMDIYQK(gl)R_
TKT	Ubiquitylation	K232	-0.004	-0.192	_AFGQAK(gl)HQPTAIIAK_
TKT	Phosphorylation	T295	0.496		_ILAT(ph)PPQEDAPSVDIANIR_
TKT	Ubiquitylation	K310	0.188	1.179	_MPSLPSYK(gl)VGDK_
TKT	Ubiquitylation	K319	1.271	1.560	_K(gl)AYGQALAK_
TKT	Ubiquitylation	K353		0.209	_NSTFSEIFKK(gl)_
TKT	Ubiquitylation	K538	-1.355		_VLDPFTIK(gl)PLDR_
TKT	Ubiquitylation	K597	-0.077	0.231	_SGK(gl)PAELLK_
TMEM173	Ubiquitylation	K289		0.324	_EDRLEQAK(gl)LFCR_
TMEM173	Phosphorylation	S358		0.609	_TSAVPSTSTMS(ph)QEPELLISGMEKPLPLR_
TRIM37	Ubiquitylation	K679	-0.977	-0.642	_LK(gl)TQMAEVR_
TRIM37	Ubiquitylation	K693	-1.498	-0.586	_TDVK(gl)NTLSEIK_
TYSND1	Ubiquitylation	K389		0.440	_STTPK(gl)SVAIWGR_
VIM	Phosphorylation	S25	-0.029		_M(ox)FGGPGTASRPS(ph)SSR_
VIM	Phosphorylation	S26	0.491	-0.489	_M(ox)FGGPGTASRPSS(ph)SR_
VIM	Phosphorylation	S55		0.010	_SLYAS(ph)SPGGVYATR_
VIM	Phosphorylation	S56	-1.044	0.170	_SLYASS(ph)PGGVYATR_
VIM	Phosphorylation	S73	-0.003	0.375	_LRSS(ph)VPGVR_
VIM	Ubiquitylation	K104	-0.285	0.120	_TNEK(gl)VELQELNDR_
VIM	Ubiquitylation	K120	-0.582	0.786	_FANYIDK(gl)VR_
VIM	Ubiquitylation	K139	-0.472	0.704	_ILLAELEQLK(gl)GQGK_
VIM	Ubiquitylation	K143	-0.705		_ILLAELEQLKGQGK(gl)SR_
VIM	Ubiquitylation	K168	0.300	0.420	_RQVDQLTNDK(gl)AR_
VIM	Ubiquitylation	K188	0.146	0.024	_LREK(gl)LQEEMLQR_
VIM	Ubiquitylation	K235	-0.092		_KVESLQEEIAFLK(gl)K_
VIM	Ubiquitylation	K282	-0.294		_QQYESVAAK(gl)NLQEAEEWYK_
VIM	Ubiquitylation	K292	-0.491	0.405	_NLQEAEEWYK(gl)SK_
VIM	Ubiquitylation	K294	-0.447	0.397	_SK(gl)FADLSEAANR_
VIM	Ubiquitylation	K313	-0.036	0.304	_QAK(gl)QESTEYRR_
VIM	Ubiquitylation	K334	-0.057	0.450	_QVQSLTCEVDALK(gl)GTNESLER_
VIM	Ubiquitylation	K373	-0.435	1.135	_LQDEIQNM(ox)K(gl)EEMAR_
VIM	Phosphorylation	S409		-0.591	_LLEGEES(ph)RISLPLPNFSSLNLR_
VIM	Phosphorylation	S412	-0.514	-0.381	_IS(ph)LPLPNFSSLNLR_
VIM	Phosphorylation	S419	-0.492		_ISLPLPNFS(ph)SLNLR_
VIM	Phosphorylation	S420	-0.473	-0.087	_ISLPLPNFSS(ph)LNLR_
VIM	Phosphorylation	T426	-0.694	0.166	_ET(ph)NLDSLPLVDTHSK_
VIM	Phosphorylation	S430	-0.850	0.053	_ETNLDS(ph)LPLVDTHSK_
VIM	Ubiquitylation	K439	-0.337	-0.056	_ETNLDSLPLVDTHSK(gl)R_
VIM	Ubiquitylation	K445	0.260	0.578	_TLLIK(gl)TVETR_