RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RAD50	3	0.350	-0.420	0.165	0.571	0.509	0.691	0.587
MCM6	2	-0.170	-0.180	1.067	0.473	-0.065
NBN	2	-0.220	-0.170		0.708	0.569	-0.563	0.354
ERCC2	2	-0.590	1.060	-0.491		1.066
ERCC3	2	-1.110	1.490		2.619	2.418		0.499
DDX3X	2	-0.250	0.370	0.081	-0.794	-0.166	-0.062	-0.025
BRIP1	1	0.650	-0.340
CHD2	1	1.520	-0.800				0.684	1.030
RUVBL2	1	-2.210	5.080	0.796	0.479	0.807	0.364	0.491
RECQL	0	-0.890	2.070	-0.132	0.119	-0.395	-0.106	-0.300
DDX11	0	-0.980	0.900
MRE11A	0	1.600	-0.730		0.145	0.420
MRE11A	0	1.600	-0.730	0.023			0.453	0.150
XRCC5	0	1.940	-0.800	0.205	-0.587	0.234	-0.176	0.162
MCM4	0	0.700	0.170	0.876	0.344	-0.023	0.237	0.753
CHD4	0	0.740	-0.710	-2.910			-0.998	-0.326
CHD4	0	0.740	-0.710	0.187	0.222	0.572	0.098	0.155
HELB	0	1.030	-0.690
FBXO18	0	1.150	-0.580
DHX9	0	0.160	-0.600	-0.456	-0.799	-0.169
G3BP1	0	-1.510	1.890	0.496	1.155	0.123	-0.821	-0.258
G3BP1	0	-1.510	1.890
CHD1	0	-0.860	0.880		-0.551	0.633	0.179	0.182
WRN	0	-0.320	-0.170					0.180
MCM7	0	-0.260	-0.010		0.361	-0.040
MCM7	0	-0.260	-0.010	0.592
CHD3	0	-1.560	2.320	-2.910			-0.998	-0.326
CHD3	0	-1.560	2.320	0.225	0.227	0.558
CHD3	0	-1.560	2.320				0.549	0.482
XRCC6	0	0.960	-0.800
XRCC6	0	0.960	-0.800	-0.089	-0.758	0.145	0.033	0.140
BLM	0	1.270	-0.830	-0.850	-0.141	0.144	0.151	0.149
BLM	0	1.270	-0.830

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BLM	Phosphorylation	S144		1.234	_KLEFSSS(ph)PDSLSTINDWDDMDDFDTSETSK_
BRIP1	Phosphorylation	S112	0.807	1.459	_HFNYPS(ph)TPPSER_
BRIP1	Phosphorylation	T113	1.675		_HFNYPST(ph)PPSER_
BRIP1	Phosphorylation	S206		-0.381	_INSFS(ph)PQKPPGHCSR_
BRIP1	Ubiquitylation	K764		-0.462	_GK(gl)VSEGLDFSDDNAR_
BRIP1	Ubiquitylation	K797	-0.723	0.188	_DLQVELK(gl)R_
BRIP1	Phosphorylation	S1032	-0.789	-0.532	_ATPELGSSENSASS(ph)PPR_
BRIP1	Phosphorylation	S1237	0.424	0.355	_NFKPS(ph)PSK_
CHD1	Phosphorylation	S89		0.026	_S(ph)SPSILAVQR_
CHD1	Phosphorylation	S90	0.706	-0.009	_SS(ph)PSILAVQR_
CHD1	Ubiquitylation	K455	-0.198		_TTPFKDCK(gl)VLK_
CHD1	Ubiquitylation	K1320	-1.450		_K(gl)EALSGAGSSK_
CHD1	Phosphorylation	S1677	0.403	0.455	_ASSSGPRS(ph)PLDQR_
CHD2	Phosphorylation	S1364	0.665	0.414	_LKEEHGIELS(ph)SPR_
CHD2	Phosphorylation	S1365		2.727	_LKEEHGIELS(ph)SPR_
CHD3	Phosphorylation	S402		0.539	_EGIQWEAKEDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR_
CHD3	Phosphorylation	S489	-1.030	-2.127	_WGQPPS(ph)PTPVPRPPDADPNTPSPK_
CHD3	Phosphorylation	T491		-2.659	_WGQPPS(ph)PTPVPRPPDADPNTPSPK_
CHD3	Phosphorylation	S772	-0.647	-1.419	_KELQGDGPPSS(ph)PTNDPTVK_
CHD3	Phosphorylation	T774		-0.442	_ELQGDGPPSSPT(ph)NDPTVK_
CHD3	Phosphorylation	S1509	-0.565	-0.704	_MSQPGS(ph)PSPK_
CHD3	Phosphorylation	T1514		-1.082	_T(ph)PTPSTPGDTQPNTPAPVPPAEDGIK_
CHD3	Phosphorylation	T1519		-1.446	_TPTPST(ph)PGDTQPNTPAPVPPAEDGIK_
CHD3	Phosphorylation	T1527	-2.218	-2.475	_TPTPS(ph)TPGDTQPNT(ph)PAPVPPAEDGIK_
CHD3	Phosphorylation	S1544	1.206	1.130	_IEENS(ph)LKEEESIEGEK_
CHD3	Phosphorylation	S1660	-0.273	-0.515	_METEADAPS(ph)PAPSLGER_
CHD4	Phosphorylation	S402		0.539	_EGIQWEAKEDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR_
CHD4	Phosphorylation	S489	-1.030	-2.127	_WGQPPS(ph)PTPVPRPPDADPNTPSPK_
CHD4	Phosphorylation	T491		-2.659	_WGQPPS(ph)PTPVPRPPDADPNTPSPK_
CHD4	Ubiquitylation	K884		0.702	_NNQSK(gl)FFR_
CHD4	Ubiquitylation	K959	-0.609		_LK(gl)ADVFK_
CHD4	Phosphorylation	S1509	-0.565	-0.704	_MSQPGS(ph)PSPK_
CHD4	Phosphorylation	T1514		-1.082	_T(ph)PTPSTPGDTQPNTPAPVPPAEDGIK_
CHD4	Phosphorylation	T1519		-1.446	_TPTPST(ph)PGDTQPNTPAPVPPAEDGIK_
CHD4	Phosphorylation	T1527	-2.218	-2.475	_TPTPS(ph)TPGDTQPNT(ph)PAPVPPAEDGIK_
CHD4	Phosphorylation	S1544	1.206	1.130	_IEENS(ph)LKEEESIEGEK_
CHD4	Ubiquitylation	K1778		0.999	_GNFLEIK(gl)NK_
CHD4	Ubiquitylation	K1780		0.999	_GNFLEIK(gl)NK_
CHD4	Ubiquitylation	K1844	-0.796		_ESMAGNK(gl)PANAVLHK_
CHD4	Ubiquitylation	K1865	-0.216		_QLEELLSDMK(gl)ADVTR_
DDX11	Ubiquitylation	K173	0.779	-0.864	_VQLK(gl)YAAK_
DDX11	Ubiquitylation	K520		-0.747	_YCEK(gl)SMISR_
DDX11	Ubiquitylation	K830		-1.499	_SAELQEK(gl)MAYLDQTLPR_
DDX3X	Ubiquitylation	K78	1.311		_DK(gl)DAYSSFGSR_
DDX3X	Ubiquitylation	K93	0.657	1.846	_GK(gl)SSFFSDR_
DDX3X	Phosphorylation	S94	0.172		_S(ph)SFFSDRGSGSR_
DDX3X	Phosphorylation	S102	0.008	0.230	_SSFFSDRGS(ph)GSR_
DDX3X	Phosphorylation	S104	-0.231	0.320	_SSFFSDRGSGS(ph)R_
DDX3X	Ubiquitylation	K130	1.572	1.502	_SGFGK(gl)FER_
DDX3X	Ubiquitylation	K347	-0.406	0.360	_GK(gl)IGLDFCK_
DDX3X	Ubiquitylation	K503	-0.796		_SGK(gl)SPILVATAVAAR_
DDX3X	Phosphorylation	S602		-0.349	_S(ph)SRFSGGFGAR_
DDX3X	Phosphorylation	S603		-0.330	_SS(ph)RFSGGFGAR_
DDX3X	Phosphorylation	S606	-0.248	-0.447	_FS(ph)GGFGAR_
DHX9	Ubiquitylation	K16	0.349		_K(gl)MTPSYEIR_
DHX9	Phosphorylation	S87	-3.262	-3.196	_SEEVPAFGVAS(ph)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK_
DHX9	Phosphorylation	T97		-2.744	_SEEVPAFGVASPPPLTDTPDT(ph)TANAEGDLPTTM(ox)GGPLPPHLALK_
DHX9	Ubiquitylation	K146	0.085	0.291	_GANLK(gl)DYYSR_
DHX9	Ubiquitylation	K191	-0.896	-0.427	_LNQYFQK(gl)EK_
DHX9	Ubiquitylation	K193		-0.204	_LNQYFQK(gl)EK_
DHX9	Ubiquitylation	K467	0.273	0.693	_GEEPGK(gl)SCGYSVR_
DHX9	Ubiquitylation	K497	0.228	-0.210	_K(gl)LEAGIR_
DHX9	Ubiquitylation	K857	-0.156	-0.205	_ILAK(gl)LPIEPR_
DHX9	Ubiquitylation	K1024	0.044	-0.110	_NALIHK(gl)SSVNCPFSSQDMK_
DHX9	Ubiquitylation	K1037	0.034		_SSVNCPFSSQDMK(gl)YPSPFFVFGEK_
ERCC2	Ubiquitylation	K268	5.973	1.957	_CQGNLETLQK(gl)TVLR_
ERCC2	Ubiquitylation	K507		-2.034	_GNDQVAISSK(gl)FETR_
FBXO18	Ubiquitylation	K301		-0.132	_YTATTK(gl)CSPSVDPER_
G3BP1	Ubiquitylation	K5	-0.296		_VMEK(gl)PSPLLVGR_
G3BP1	Ubiquitylation	K50	-0.885	-0.279	_NSSYVHGGLDSNGK(gl)PADAVYGQK_
G3BP1	Ubiquitylation	K64	0.737		_K(gl)VM(ox)SQNFTNCHTK_
G3BP1	Ubiquitylation	K76	0.373	0.769	_VM(ox)SQNFTNCHTK(gl)IR_
G3BP1	Phosphorylation	T143	-0.277		_YQDEVFGGFVT(ph)EPQEESEEEVEEPEER_
G3BP1	Phosphorylation	S149	-0.519	-0.267	_YQDEVFGGFVTEPQEES(ph)EEEVEEPEER_
G3BP1	Phosphorylation	S230	-0.445		_S(ph)SSPAPADIAQTVQEDLR_
G3BP1	Phosphorylation	S231	-0.108	-0.356	_SS(ph)SPAPADIAQTVQEDLR_
G3BP1	Phosphorylation	S232	-0.357	-0.128	_SSS(ph)PAPADIAQTVQEDLR_
G3BP1	Phosphorylation	T241	-0.320	-0.238	_SSSPAPADIAQT(ph)VQEDLR_
HELB	Phosphorylation	S967	-0.401	-0.259	_LSSSGAPPADFPS(ph)PR_
HELB	Phosphorylation	S1048		0.877	_RTCGVNDDES(ph)PSK_
HELB	Phosphorylation	S1058		0.701	_IFMVGES(ph)PQVSSR_
MCM4	Phosphorylation	S26	-0.380	0.511	_ATPAQTPRS(ph)EDAR_
MCM4	Phosphorylation	S131	0.424	0.474	_GLQVDLQS(ph)DGAAAEDIVASEQSLGQK_
MCM4	Ubiquitylation	K220	-0.271	0.326	_SFDK(gl)NLYR_
MCM4	Phosphorylation	S326	0.118	0.226	_IAEPS(ph)VCGR_
MCM4	Ubiquitylation	K353		-0.534	_SLFSDKQMIK(gl)_
MCM4	Ubiquitylation	K409	0.140	-0.445	_VSNVK(gl)SVYK_
MCM4	Ubiquitylation	K450		-0.607	_VELLK(gl)ELSR_
MCM4	Ubiquitylation	K478		-0.439	_LASALAPSIYEHEDIKK(gl)_
MCM4	Ubiquitylation	K536	-0.941	-0.853	_GQYTSGK(gl)GSSAVGLTAYVMKDPETR_
MCM4	Ubiquitylation	K549	-0.023	-0.647	_GSSAVGLTAYVMK(gl)DPETR_
MCM4	Ubiquitylation	K628	-1.124	-3.224	_TSVLAAANPIESQWNPKK(gl)_
MCM4	Ubiquitylation	K746		-0.079	_LAEAHAK(gl)VR_
MCM4	Ubiquitylation	K752	-0.885	-0.700	_LSNK(gl)VEAIDVEEAK(gl)R_
MCM4	Ubiquitylation	K762	-0.483	-0.551	_VEAIDVEEAK(gl)R_
MCM4	Ubiquitylation	K770	-0.963	-0.688	_EALK(gl)QSATDPR_
MCM4	Ubiquitylation	K814		-1.087	_GK(gl)TPALK_
MCM4	Ubiquitylation	K858	0.042		_ALADDDFLTVTGK(gl)TVR_
MCM6	Phosphorylation	S13	4.283	4.775	_(ac)M(ox)DLAAAAEPGAGS(ph)QHLEVRDEVAEK_
MCM6	Ubiquitylation	K95	0.656		_ALK(gl)TFVK_
MCM6	Ubiquitylation	K197	0.461	0.797	_FLLDTNK(gl)SR_
MCM6	Ubiquitylation	K332	0.272	0.709	_NQMTVK(gl)EWEK_
MCM6	Ubiquitylation	K422	0.854		_AVYTSGK(gl)ASSAAGLTAAVVR_
MCM6	Ubiquitylation	K490	0.630		_AGVK(gl)ATLNAR_
MCM6	Ubiquitylation	K517	0.150	-0.502	_SLK(gl)QNINLSAPIMSR_
MCM6	Ubiquitylation	K611	1.032	0.016	_DGSGVTK(gl)SSWR_
MCM6	Ubiquitylation	K643	-0.198		_MHCCDEVQPK(gl)HVK_
MCM6	Ubiquitylation	K654	0.288	-0.028	_LLNK(gl)SIIR_
MCM6	Ubiquitylation	K744	-0.152	-0.415	_KVEEEEDESALK(gl)R_
MCM6	Phosphorylation	S758	0.528	2.700	_EIES(ph)EIDSEEELINK_
MCM6	Phosphorylation	S762	1.561	1.325	_EIESEIDS(ph)EEELINK_
MCM6	Ubiquitylation	K775	0.748		_IIEK(gl)VIHR_
MCM7	Ubiquitylation	K4		-1.164	_(ac)ALK(gl)DYALEKEK_
MCM7	Ubiquitylation	K10	-0.334	-1.453	_(ac)ALKDYALEK(gl)EK_
MCM7	Ubiquitylation	K12		-1.492	_DYALEK(gl)EK_
MCM7	Ubiquitylation	K28	-0.102	-0.861	_FLQEFYQDDELGK(gl)K_
MCM7	Ubiquitylation	K29	-1.023	-0.094	_FLQEFYQDDELGKK(gl)QFK_
MCM7	Ubiquitylation	K32	0.146	-0.970	_QFK(gl)YGNQLVR_
MCM7	Ubiquitylation	K89	-1.906	-1.328	_LFADAVQELLPQYK(gl)ER_
MCM7	Phosphorylation	S121	0.902	0.509	_S(ph)PQNQYPAELMR_
MCM7	Ubiquitylation	K145	-2.703		_RFELYFQGPSSNK(gl)PR_
MCM7	Ubiquitylation	K159	0.038	-0.495	_ADSVGK(gl)LVTVR_
MCM7	Ubiquitylation	K231		-0.965	_FIK(gl)FQEMK_
MCM7	Ubiquitylation	K236		-1.769	_FQEMK(gl)MQEHSDQVPVGNIPR_
MCM7	Ubiquitylation	K352		-1.468	_LAASIAPEIYGHEDVKK(gl)_
MCM7	Ubiquitylation	K557	-2.556	-2.098	_QPPSQFEPLDMK(gl)LMR_
MCM7	Ubiquitylation	K596	-0.751	-0.539	_REAWASK(gl)DATYTSAR_
MCM7	Ubiquitylation	K627	-0.965	-0.588	_MVDVVEK(gl)EDVNEAIR_
MCM7	Ubiquitylation	K641	-0.836	-0.945	_LMEMSK(gl)DSLLGDKGQTAR_
MCM7	Ubiquitylation	K648	-0.422	-0.441	_DSLLGDK(gl)GQTAR_
MRE11A	Ubiquitylation	K387	0.442		_FSQK(gl)FVDR_
NBN	Phosphorylation	T335		-1.121	_T(ph)TTPGPSLSQGVSVDEK_
NBN	Phosphorylation	S341	3.085		_TTTPGPS(ph)LSQGVSVDEK_
NBN	Phosphorylation	S343	3.710	3.629	_TTTPGPSLS(ph)QGVSVDEK_
NBN	Phosphorylation	S397	2.719	1.458	_MLS(ph)QDAPTVK_
NBN	Phosphorylation	S432	-0.192	-0.395	_IPNYQLS(ph)PTK_
NBN	Phosphorylation	T434	-0.188	-0.683	_IPNYQLSPT(ph)KLPSINK_
NBN	Phosphorylation	S615	1.985	4.691	_IS(ph)QENEIGKK_
RAD50	Ubiquitylation	K62	-1.069		_YICTGDFPPGTK(gl)GNTFVHDPK_
RAD50	Phosphorylation	S635	2.474	3.050	_LFDVCGS(ph)QDFESDLDR_
RAD50	Ubiquitylation	K753	0.394	0.397	_NK(gl)LQNVNR_
RAD50	Ubiquitylation	K933	0.397		_FQQEKEELINKK(gl)_
RAD50	Ubiquitylation	K1068	0.098		_LEENIDNIK(gl)R_
RAD50	Ubiquitylation	K1178	-0.548		_SDADENVSASDK(gl)RR_
RAD50	Ubiquitylation	K1285	2.195		_SEYVEK(gl)FYR_
RECQL	Ubiquitylation	K38	0.847	1.387	_QQELIQK(gl)K_
RUVBL2	Ubiquitylation	K9	-0.203	-0.294	_(ac)ATVTATTK(gl)VPEIRDVTR_
RUVBL2	Ubiquitylation	K160	0.331		_VGK(gl)LTLK_
RUVBL2	Ubiquitylation	K186	-0.554		_DK(gl)VQAGDVITIDK_
RUVBL2	Ubiquitylation	K234	-0.191	-0.742	_FVQCPDGELQK(gl)R_
RUVBL2	Ubiquitylation	K365	-0.355	-0.601	_LLIVSTTPYSEK(gl)DTK_
RUVBL2	Ubiquitylation	K368		-0.345	_LLIVSTTPYSEKDTK(gl)QILR_
RUVBL2	Ubiquitylation	K417		-1.196	_K(gl)GTEVQVDDIK(gl)R_
RUVBL2	Ubiquitylation	K427	0.479	0.403	_K(gl)GTEVQVDDIK(gl)R_
WRN	Ubiquitylation	K134		0.717	_MLLENKAVK(gl)_
WRN	Phosphorylation	S1133	0.363	0.023	_SIMVQS(ph)PEK_
XRCC5	Ubiquitylation	K195	-0.495	-0.075	_LGGHGPSFPLK(gl)GITEQQK_
XRCC5	Ubiquitylation	K265	-0.577	0.489	_IAAYK(gl)SILQER_
XRCC5	Ubiquitylation	K282	0.763		_TWTVVDAK(gl)TLKK_
XRCC5	Ubiquitylation	K325	0.022	-0.122	_YGSDIVPFSK(gl)VDEEQMK_
XRCC5	Ubiquitylation	K332	-0.032	0.491	_VDEEQMK(gl)YK_
XRCC5	Ubiquitylation	K347	0.588	1.044	_CFSVLGFCK(gl)SSQVQR_
XRCC5	Ubiquitylation	K481	-1.648	0.087	_TDTLEDLFPTTK(gl)IPNPR_
XRCC5	Ubiquitylation	K532	0.343	-0.001	_SQIPLSK(gl)IK_
XRCC5	Ubiquitylation	K534	-0.146	0.207	_SQIPLSKIK(gl)_
XRCC5	Ubiquitylation	K543	0.666	0.157	_TLFPLIEAK(gl)KK_
XRCC5	Ubiquitylation	K544	0.165	0.157	_TLFPLIEAKK(gl)_
XRCC5	Ubiquitylation	K660	0.644	1.285	_FNNFLK(gl)ALQEK_
XRCC5	Ubiquitylation	K665	0.630	0.990	_ALQEK(gl)VEIK_
XRCC5	Ubiquitylation	K702	0.626	0.332	_EEASGSSVTAEEAK(gl)K_
XRCC5	Ubiquitylation	K703	0.743	0.332	_EEASGSSVTAEEAKK(gl)_
XRCC6	Phosphorylation	S27	0.932	0.873	_TEGDEEAEEEQEENLEAS(ph)GDYK_
XRCC6	Ubiquitylation	K114	-0.534	-0.728	_NIYVLQELDNPGAK(gl)R_
XRCC6	Ubiquitylation	K123		-0.756	_ILELDQFK(gl)GQQGQK_
XRCC6	Ubiquitylation	K129	0.079	-0.683	_ILELDQFKGQQGQK(gl)R_
XRCC6	Ubiquitylation	K182		-1.603	_IMLFTNEDNPHGNDSAK(gl)ASR_
XRCC6	Ubiquitylation	K282	-2.587		_ALK(gl)PPPIK_
XRCC6	Ubiquitylation	K287	-1.436	-2.286	_ALKPPPIK(gl)LYR_
XRCC6	Ubiquitylation	K299	-0.535	-0.792	_ETNEPVKTK(gl)TR_
XRCC6	Ubiquitylation	K317	-0.584	-0.964	_TFNTSTGGLLLPSDTK(gl)R_
XRCC6	Ubiquitylation	K331	-1.666		_QIILEK(gl)EETEELKR_
XRCC6	Ubiquitylation	K338	-1.479	-1.003	_QIILEKEETEELK(gl)R_
XRCC6	Ubiquitylation	K451	-1.713	-1.901	_MPFTEK(gl)IMATPEQVGK_
XRCC6	Phosphorylation	T455	-0.085	0.348	_IMAT(ph)PEQVGK_
XRCC6	Ubiquitylation	K461	0.239	-0.409	_IMATPEQVGK(gl)MK_
XRCC6	Ubiquitylation	K463	-0.609	-0.641	_MK(gl)AIVEK_
XRCC6	Ubiquitylation	K468	-1.302	-0.451	_AIVEK(gl)LR_
XRCC6	Phosphorylation	S475	1.136	0.167	_S(ph)DSFENPVLQQHFR_
XRCC6	Phosphorylation	S477	1.023	0.034	_SDS(ph)FENPVLQQHFR_
XRCC6	Ubiquitylation	K516		-1.089	_VEAMNK(gl)R_
XRCC6	Phosphorylation	S560	0.318	0.378	_VEYS(ph)EEELKTHISK_
XRCC6	Ubiquitylation	K565	0.021	-0.887	_VEYSEEELK(gl)THISK_
XRCC6	Ubiquitylation	K575	0.031	-0.121	_GTLGK(gl)FTVPMLK_
XRCC6	Ubiquitylation	K591	0.474	0.187	_AYGLK(gl)SGLK_