RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
JUN	3	-0.930	0.930			-0.126
ATF2	2	-1.380	1.800
BAG1	1
CCND1	1	-1.820	3.470
JUND	1	0.270	0.190
ETS1	1	1.070	-0.650
CBFB	0	1.550	-0.600
FOSL2	0	0.940	-0.940
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
HIF1A	0	-0.480	0.400
NFATC2	0	-0.090	0.320
TIMP1	0	0.660	-0.830
TGFB1	0	-0.550	1.050
NR3C1	0	0.390	-0.260
CREB1	0	1.080	-0.800			-1.027
DUSP1	0	0.290	-0.100
ELF1	0	0.320	-0.110
ELF1	0	0.320	-0.110
COPS5	0	-0.780	1.480	-0.905	0.882	0.714
MYC	0	0.170	0.550	-2.443	-0.949	-0.454		-1.290
TP53	0	-1.070	1.050	-2.808	0.076	-0.094	0.436	0.497
ACTA1	0	-0.170	0.010		-0.189	0.025	-0.002	-0.165
ACTA1	0	-0.170	0.010	0.157
CDKN2A	0	-0.080	-0.260	-0.556		-1.080	-3.270	-1.110
TCF7L2	0	-0.550	0.790	-0.741
GJA1	0	-0.410	0.430
ATF3	0	0.740	-0.540
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
CDK1	0	-0.370	0.080	-0.202	-0.884	-0.107	-0.097	-0.501
JUNB	0	0.350	-0.410
SP1	0			0.404			0.333	0.650
MAFG	0	-0.520	-0.030			0.192
MAFG	0	0.550	-0.830			0.192
HLA-A	0	0.790	-0.840

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATF2	Phosphorylation	T71	-1.263	-1.166	_NDSVIVADQTPT(ph)PTR_
ATF2	Phosphorylation	S90	2.624	2.389	_NCEEVGLFNELAS(ph)PFENEFKK_
ATF2	Phosphorylation	S112	1.025	1.118	_MPLDLS(ph)PLATPIIR_
ATF3	Phosphorylation	T162		1.218	_AQNGRT(ph)PEDERNLFIQQIK_
BAG1	Phosphorylation	S119		2.802	_S(ph)QEVTRDEESTR_
BAG1	Ubiquitylation	K273	-0.087	0.605	_DLQAEALCK(gl)LDRR_
CBFB	Ubiquitylation	K28	0.486	0.548	_ECEIK(gl)YTGFR_
CCND1	Ubiquitylation	K33		-0.490	_AMLK(gl)AEETCAPSVSYFK_
CCND1	Ubiquitylation	K46	-1.016	-0.036	_AEETCAPSVSYFK(gl)CVQK_
CCND1	Ubiquitylation	K95	-0.733	-0.137	_FLSLEPVK(gl)K_
CCND1	Ubiquitylation	K96	-0.846	-0.155	_FLSLEPVKK(gl)_
CCND1	Ubiquitylation	K238		0.245	_VIK(gl)CDPDCLR_
CDK1	Ubiquitylation	K6	0.011	-0.784	_(ac)M(ox)EDYTK(gl)IEK_
CDK1	Ubiquitylation	K20	-0.327	-0.270	_IGEGTYGVVYK(gl)GR_
CDK1	Ubiquitylation	K33	0.736	0.239	_TTGQVVAMK(gl)K_
CDK1	Ubiquitylation	K34		-0.306	_TTGQVVAMKK(gl)_
CDK1	Ubiquitylation	K58	0.312	-0.262	_EISLLK(gl)ELR_
CDK1	Ubiquitylation	K136		-0.468	_DLK(gl)PQNLLIDDK(gl)GTIK_
CDK1	Ubiquitylation	K145	0.161	-0.954	_DLKPQNLLIDDK(gl)GTIK_
CDK1	Ubiquitylation	K149		-0.038	_GTIK(gl)LADFGLAR_
CDK1	Ubiquitylation	K251	-0.047	-1.236	_WK(gl)PGSLASHVK_
CDK1	Ubiquitylation	K280	0.179	-1.210	_MLIYDPAK(gl)R_
COPS5	Ubiquitylation	K34	0.220		_K(gl)QQQEILAAKPWTK_
COPS5	Ubiquitylation	K56	0.550		_YCK(gl)ISALALLK_
COPS5	Ubiquitylation	K180		0.752	_TISAGK(gl)VNLGAFR_
COPS5	Ubiquitylation	K194	-1.866		_GYK(gl)PPDEGPSEYQTIPLNK_
CREB1	Phosphorylation	S271	-0.979	-1.450	_TAPTSTIAPGVVM(ox)ASS(ph)PALPTQPAEEAAR_
CREB1	Ubiquitylation	K333	1.343		_ALK(gl)DLYCHK_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
DUSP1	Ubiquitylation	K97		-0.523	_SAALDGAK(gl)R_
ELF1	Phosphorylation	S163	-0.466		_YADS(ph)PGASSPEQPK_
ELF1	Phosphorylation	S167		-0.658	_YADSPGAS(ph)SPEQPKR_
ELF1	Phosphorylation	S187	-1.065	-1.182	_TKPPRPDS(ph)PATTPNISVK_
ELF1	Phosphorylation	T190		-0.967	_TKPPRPDSPAT(ph)TPNISVK_
ELF1	Ubiquitylation	K280		-0.045	_GILAK(gl)VEGQR_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
ETS1	Ubiquitylation	K416		7.479	_MNYEK(gl)LSR_
ETS1	Ubiquitylation	K427		-0.895	_YYYDK(gl)NIIHK_
FOSL2	Phosphorylation	S200		-0.517	_S(ph)PPAPGLQPMR_
GJA1	Ubiquitylation	K109	0.099		_LNKK(gl)EEELK_
GJA1	Ubiquitylation	K128	0.209	1.057	_VAQTDGVNVDMHLK(gl)QIEIK_
GJA1	Ubiquitylation	K136	-0.888		_FK(gl)YGIEEHGK_
GJA1	Ubiquitylation	K243	0.152	0.237	_GK(gl)SDPYHATSGALSPAK_
GJA1	Ubiquitylation	K258	-0.280	0.063	_SDPYHATSGALSPAK(gl)DCGSQK_
GJA1	Ubiquitylation	K303	-0.106	0.280	_NYNK(gl)QASEQNWANYSAEQNR_
GJA1	Ubiquitylation	K345		-0.464	_MGQAGSTISNSHAQPFDFPDDNQNSK(gl)K_
GJA1	Ubiquitylation	K346	-1.004	-0.300	_MGQAGSTISNSHAQPFDFPDDNQNSKK(gl)_
GJA1	Phosphorylation	S364		-0.300	_LAAGHELQPLAIVDQRPS(ph)SR_
GJA1	Phosphorylation	S365		-0.300	_LAAGHELQPLAIVDQRPS(ph)SR_
GJA1	Phosphorylation	S372	0.940	1.430	_AS(ph)SRPRPDDLEI_
GJA1	Phosphorylation	S373	0.664	0.467	_ASS(ph)RPRPDDLEI_
HIF1A	Ubiquitylation	K10		-1.686	_(ac)MEGAGGANDK(gl)K_
HIF1A	Ubiquitylation	K11		-1.686	_(ac)MEGAGGANDK(gl)K_
HIF1A	Ubiquitylation	K173		-0.662	_MK(gl)CTLTSR_
HIF1A	Ubiquitylation	K186		-0.590	_TMNIK(gl)SATWK_
HIF1A	Ubiquitylation	K252		-0.784	_HSLDM(ox)K(gl)FSYCDER_
HIF1A	Ubiquitylation	K371		-0.508	_PVESSDMK(gl)MTQLFTK_
HIF1A	Ubiquitylation	K378		-0.077	_MTQLFTK(gl)VESEDTSSLFDK_
HIF1A	Ubiquitylation	K390		-0.348	_VESEDTSSLFDK(gl)LKK_
HIF1A	Ubiquitylation	K392		-0.546	_VESEDTSSLFDKLK(gl)_
HIF1A	Ubiquitylation	K393		-0.451	_VESEDTSSLFDKLKK(gl)_
HIF1A	Ubiquitylation	K710		-1.696	_TTVPEEELNPK(gl)ILALQNAQR_
HLA-A	Ubiquitylation	K92		-0.349	_NVK(gl)AQSQTDRVDLGTLR_
HLA-A	Ubiquitylation	K168		0.549	_SWTAADMAAQITK(gl)R_
HLA-A	Ubiquitylation	K346	-0.072	-0.211	_K(gl)GGSYTQAASSDSAQGSDVSLTACK(gl)V_
HLA-A	Ubiquitylation	K370	0.345	0.434	_K(gl)GGSYTQAASSDSAQGSDVSLTACK(gl)V_
JUN	Phosphorylation	S58	-0.167	-1.247	_AKNS(ph)DLLTSPDVGLLK_
JUN	Phosphorylation	T62	2.545	1.674	_NSDLLT(ph)SPDVGLLK_
JUN	Phosphorylation	S63	2.030	1.458	_NSDLLTS(ph)PDVGLLK_
JUN	Ubiquitylation	K70	9.213		_NSDLLTSPDVGLLK(gl)_
JUN	Phosphorylation	S73	1.499	0.845	_LAS(ph)PELER_
JUN	Phosphorylation	S243	-0.642	-1.399	_LQALKEEPQTVPEMPGETPPLS(ph)PIDMESQER_
JUN	Ubiquitylation	K309	1.034	0.155	_EQVAQLK(gl)QK_
JUNB	Phosphorylation	T255		-0.205	_DAT(ph)PPVS(ph)PINMEDQER_
JUNB	Phosphorylation	S259		-0.205	_DAT(ph)PPVS(ph)PINMEDQER_
JUND	Phosphorylation	S90	2.088	1.448	_ADGAPSAAPPDGLLAS(ph)PDLGLLK_
JUND	Phosphorylation	S255	-1.629	-1.982	_LAALKDEPQTVPDVPSFGES(ph)PPLSPIDMDTQER_
JUND	Phosphorylation	S259		-0.855	_LAALKDEPQTVPDVPSFGESPPLS(ph)PIDMDTQER_
MAFG	Ubiquitylation	K110	0.453	-0.273	_SK(gl)YEALQTFAR_
MAFG	Phosphorylation	S124		-0.881	_TVARS(ph)PVAPAR_
MYC	Phosphorylation	S20	-1.444	-1.145	_PLNVS(ph)FTNR_
MYC	Phosphorylation	T72	-1.699	-1.813	_FELLPT(ph)PPLS(ph)PSRR_
MYC	Phosphorylation	S76	-1.777	-1.435	_FELLPTPPLS(ph)PSR_
MYC	Phosphorylation	S81		0.459	_S(ph)GLCSPSYVAVTPFSLR_
MYC	Phosphorylation	S85	0.199	0.073	_SGLCS(ph)PSYVAVTPFSLR_
MYC	Ubiquitylation	K162	-2.475	-1.259	_LVSEK(gl)LASYQAAR_
MYC	Phosphorylation	S295		-0.903	_SESGS(ph)PSAGGHSKPPHSPLVLK_
MYC	Phosphorylation	S307		-1.486	_SES(ph)GSPSAGGHSKPPHS(ph)PLVLK_
MYC	Ubiquitylation	K340		-2.449	_VK(gl)LDSVR_
MYC	Ubiquitylation	K403		-3.432	_DQIPELENNEK(gl)APK_
NFATC2	Phosphorylation	S53	-0.845	-1.099	_VAS(ph)PPSGPAYPDDVLDYGLKPYSPLASLSGEPPGR_
NFATC2	Phosphorylation	T325	-0.605	0.168	_T(ph)SPDPSPVSAAPSK_
NFATC2	Phosphorylation	S326	-0.605	0.168	_T(ph)SPDPSPVSAAPSK_
NR3C1	Phosphorylation	S45	-0.810	-0.399	_VSASS(ph)PSLAVASQSDSK_
NR3C1	Phosphorylation	S226		-0.070	_SDLLIDENCLLS(ph)PLAGEDDSFLLEGNSNEDCKPLILPDTKPK_
NR3C1	Ubiquitylation	K696		0.338	_MTYIK(gl)ELGK_
SP1	Phosphorylation	S2	0.834	1.114	_(ac)S(ph)DQDHSMDEMTAVVK_
SP1	Phosphorylation	S7	0.586	0.217	_(ac)SDQDHS(ph)MDEMTAVVK_
SP1	Phosphorylation	S56	-0.154		_SSSTGSSSSTGGGGQES(ph)QPSPLALLAATCSR_
SP1	Phosphorylation	S59	-0.217	-0.135	_SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR_
TCF7L2	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_
TGFB1	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TIMP1	Ubiquitylation	K70	1.253	-0.548	_MYK(gl)GFQALGDAADIR_
TP53	Ubiquitylation	K120	-0.188		_LGFLHSGTAK(gl)SVTCTYSPALNK_
TP53	Ubiquitylation	K164	0.157	-1.260	_AMAIYK(gl)QSQHMTEVVR_
TP53	Phosphorylation	S314	-0.695	-1.000	_ALPNNTSS(ph)SPQPK_
TP53	Phosphorylation	S315	-0.762	-0.959	_RALPNNTSSS(ph)PQPK_
TP53	Ubiquitylation	K320	-0.978		_ALPNNTSSSPQPKK(gl)_
TP53	Ubiquitylation	K357	-0.231	-0.823	_ELNEALELKDAQAGK(gl)EPGGSR_