RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SPAG9	2	-0.110	0.210	1.305
NRCAM	1	0.920	-0.800
TRIM32	1	0.220	0.640	-1.832			-0.176	-1.091
DMD	1	0.960	-0.560				0.854	0.214
HMG20B	0	-0.570	0.110
RHOA	0	-0.510	1.370	-0.485			0.532	0.279
MEF2A	0	0.820	-0.530
MEF2A	0	0.820	-0.530
TCF3	0	0.270	-0.020
FGFR1	0	0.210	0.150
MEF2C	0	-0.980	1.550
MEF2C	0	-0.980	1.550
NCOA1	0	1.240	-0.460
DNMT3B	0	0.990	-0.100				0.783	0.015
BMP7	0
SALL1	0			-0.080	0.063	0.213	0.247	0.009
ECT2	0	0.620	-0.960					-0.787
ACTR3	0	1.800	-1.060	0.313	-0.076	0.489	-0.053	-0.011
FOXA1	0	1.190	-0.010
LIN28A	0	0.700	-0.230
TCF12	0	0.940	-0.150
BNIP2	0	-0.790	0.810
ZEB1	0	0.640	-0.450
ZEB1	0	0.640	-0.450
ITGB1	0	0.390	-0.650				0.101	-0.036
BMP6	0	1.970	-0.630
GDPD5	0	1.980	-0.470
SOX2	0	-0.250	0.870
NKX2-5	0	-0.150	1.230		0.174	0.236
NKX2-5	0	-0.150	1.230				-0.123
ETV5	0	-0.820	1.770

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACTR3	Ubiquitylation	K225	-1.054	-1.094	_DREVGIPPEQSLETAK(gl)AVK_
ACTR3	Ubiquitylation	K251	-1.416		_EFNKYDTDGSK(gl)WIK_
ACTR3	Ubiquitylation	K264	-0.776		_QYTGINAISK(gl)K_
ACTR3	Ubiquitylation	K265		-0.295	_QYTGINAISKK(gl)_
ACTR3	Ubiquitylation	K348	0.619	0.713	_LK(gl)LSEELSGGR_
BMP6	Ubiquitylation	K409		-1.025	_VSSASDYNSSELK(gl)TACR_
BMP7	Ubiquitylation	K178		-0.107	_IYK(gl)DYIR_
BNIP2	Phosphorylation	S114	1.031	0.808	_KGS(ph)ITEYTAAEEK_
DMD	Ubiquitylation	K3317	-0.200	-0.978	_CNICK(gl)ECPIIGFR_
DMD	Phosphorylation	S3623	2.940	0.225	_SDS(ph)SQPMLLR_
DNMT3B	Ubiquitylation	K597	0.236		_ELGIK(gl)VGK_
DNMT3B	Ubiquitylation	K623	0.433		_HEGNIK(gl)YVNDVR_
ETV5	Phosphorylation	S136		-0.502	_RELHS(ph)PSSELSSCSHEQALGANYGEK_
FGFR1	Ubiquitylation	K510	1.047	-0.221	_VTK(gl)VAVK_
FOXA1	Phosphorylation	S331	-0.760	-0.866	_TGQLEGAPAPGPAAS(ph)PQTLDHSGATATGGASELK_
GDPD5	Ubiquitylation	K597	0.343		_GGGSHTK(gl)TLIER_
HMG20B	Phosphorylation	T167	0.485	0.715	_EDS(ph)SSGLMNT(ph)LLNGHK_
ITGB1	Ubiquitylation	K774	0.402		_MNAK(gl)WDTGENPIYK_
ITGB1	Ubiquitylation	K784	-0.172	0.350	_WDTGENPIYK(gl)SAVTTVVNPK_
ITGB1	Ubiquitylation	K794	0.755	0.604	_SAVTTVVNPK(gl)YEGK_
LIN28A	Ubiquitylation	K102		-0.047	_SAK(gl)GLESIR_
MEF2A	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2A	Phosphorylation	S235	0.664	-0.092	_AS(ph)PNLIGATGANSLGK_
MEF2A	Phosphorylation	T253		-1.271	_VMPT(ph)KSPPPPGGGNLGMNSR_
MEF2A	Phosphorylation	S255		-1.235	_VMPTKS(ph)PPPPGGGNLGMNSR_
MEF2A	Phosphorylation	S408	-0.173	-0.049	_SEPIS(ph)PPRDR_
MEF2A	Phosphorylation	S494	-0.858	-1.232	_GDFHSPIVLGRPPNTEDRES(ph)PSVK_
MEF2C	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2C	Phosphorylation	S240	0.008	0.302	_NS(ph)PGLLVSPGNLNK_
MEF2C	Phosphorylation	S406	0.272	0.338	_SEPVS(ph)PPRDR_
NCOA1	Phosphorylation	S22	0.503	0.810	_KGS(ph)PCDTLASSTEK_
NRCAM	Phosphorylation	S1299		4.018	_KEKEPAEGNESSEAPS(ph)PVNAMNSFV_
RHOA	Ubiquitylation	K6	0.708		_K(gl)KLVIVGDGACGK_
RHOA	Ubiquitylation	K7	0.708		_K(gl)KLVIVGDGACGK_
RHOA	Ubiquitylation	K118	-0.408		_HFCPNVPIILVGNK(gl)K_
RHOA	Ubiquitylation	K119	-0.408		_HFCPNVPIILVGNK(gl)K_
RHOA	Ubiquitylation	K135	-0.528	-0.796	_MK(gl)QEPVKPEEGRDMANR_
RHOA	Ubiquitylation	K162	0.345	0.453	_IGAFGYMECSAK(gl)TK_
SALL1	Phosphorylation	S1119	-1.156	-1.235	_DTPTSHVPSGPLSSSATS(ph)PVLLPALPR_
SOX2	Phosphorylation	S251	0.157	-0.109	_SEASSS(ph)PPVVTSSSHSR_
SPAG9	Ubiquitylation	K178	0.616		_TK(gl)LHQLSGSDQLESTAHSR_
SPAG9	Phosphorylation	S183	-0.041	0.617	_LHQLS(ph)GSDQLESTAHSR_
SPAG9	Phosphorylation	S185	-0.229	0.589	_LHQLSGS(ph)DQLESTAHSR_
SPAG9	Phosphorylation	S203	-0.173	0.319	_ERPIS(ph)LGIFPLPAGDGLLT(ph)PDAQK_
SPAG9	Phosphorylation	T217	1.022	0.515	_ERPIS(ph)LGIFPLPAGDGLLT(ph)PDAQK_
SPAG9	Phosphorylation	T226	2.211	2.141	_GGET(ph)PGSEQWK_
SPAG9	Phosphorylation	T275		2.752	_AT(ph)TPASTANSDVATIPTDTPLKEENEGFVK_
SPAG9	Phosphorylation	T276	2.516	2.823	_ATT(ph)PASTANSDVATIPTDTPLKEENEGFVK_
SPAG9	Phosphorylation	T292	2.076	1.667	_ATTPASTANSDVATIPTDT(ph)PLKEENEGFVK_
SPAG9	Phosphorylation	T330		0.261	_NVST(ph)GSAENEEKSEVQAIIESTPELDMDKDLSGYK_
SPAG9	Phosphorylation	S339	-0.150	0.210	_NVSTGSAENEEKS(ph)EVQAIIESTPELDMDKDLSGYK_
SPAG9	Phosphorylation	S593		0.642	_KRS(ph)STLSQLPGDK_
SPAG9	Phosphorylation	S594	0.719	0.528	_RSS(ph)TLSQLPGDK_
SPAG9	Phosphorylation	T595		0.585	_KRSST(ph)LSQLPGDK_
SPAG9	Ubiquitylation	K653	-0.358		_VQAFGWSLPQK(gl)YK_
SPAG9	Ubiquitylation	K699	-0.277		_LWCAVGVNLSGGK(gl)TR_
SPAG9	Phosphorylation	S728	0.903	-0.047	_S(ph)ASQSSLDKLDQELKEQQK_
SPAG9	Phosphorylation	S730	0.163	0.677	_SAS(ph)QSSLDKLDQELK_
SPAG9	Phosphorylation	S732	0.961	0.900	_SASQS(ph)SLDKLDQELKEQQK_
SPAG9	Phosphorylation	S733	0.740	0.712	_SASQSS(ph)LDKLDQELK_
SPAG9	Phosphorylation	S813		0.253	_ETDYPAGEDLS(ph)ESGQVDK_
SPAG9	Phosphorylation	S815		-0.037	_ETDYPAGEDLSES(ph)GQVDK_
SPAG9	Phosphorylation	T1264	-1.557	-1.235	_AGPSAQEPGSQT(ph)PLK_
TCF12	Phosphorylation	S385	-0.190	-0.444	_PGGQAPS(ph)SPSYENSLHSLQSR_
TCF12	Phosphorylation	S559	0.763	0.520	_TSS(ph)TNEDEDLNPEQK_
TCF3	Phosphorylation	S328	0.865	0.756	_AGAPGALS(ph)PSYDGGLHGLQSK_
TRIM32	Ubiquitylation	K175	0.333	-0.305	_AALEGVSK(gl)DLQAR_
TRIM32	Ubiquitylation	K204		1.221	_K(gl)FFTGSLAEVEK_
TRIM32	Ubiquitylation	K405	2.753		_GFLK(gl)EIRR_
TRIM32	Ubiquitylation	K506	0.638		_GSGVVK(gl)YSCLCSAVRPK_
ZEB1	Ubiquitylation	K77	0.237		_FTSLK(gl)EHIK_
ZEB1	Ubiquitylation	K398	-0.697	0.131	_SEK(gl)LPEDLTVK_
ZEB1	Phosphorylation	S713	-0.669	-0.753	_NNDQPQSANANEPQDSTVNLQS(ph)PLK_
ZEB1	Phosphorylation	S1025		0.260	_REAEERDS(ph)TEQEEAGPEILSNEHVGAR_
ZEB1	Phosphorylation	T1026		0.260	_REAEERDS(ph)TEQEEAGPEILSNEHVGAR_