bioLOGIC-db

bioLOGIC Data

Query: HMG20B

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
HMG20B	0	1.310	-0.570	0.110

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
HMG20B	Phosphorylation	T167	0.485	0.715	_EDS(ph)SSGLMNT(ph)LLNGHK_

ProteomicsDB-HMG20B »

Protein-protein Interactions for HMG20B

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait HDAC1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait HMG20A	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait HMG20B	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait LLGL2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SNAI1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in HMG20B

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	HMG_box_dom	IPR009071	0.31

Protein complexes (CORUM database) featuring HMG20B

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	Corum	632	Anti-HDAC2 complex	Database	2.11
Category members	Corum	2755	17S U2 snRNP	Database	1.77
Category members	Corum	633	anti-BHC110 complex	Database	0.53
Category members	Corum	636	BHC complex	Database	0.53
Category members	Corum	1492	BHC110 complex	Database	0.39
Category members	Corum	620	CoREST-HDAC complex	Database	0.34
Category members	Corum	871	BRAF53-BRCA2 complex	Database	0.34
Category members	Corum	626	LSD1 complex	Database	0.17

Categories featuring HMG20B

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	GO Category	GO:0005634	nucleus	Database	INF
Category members	GO Category	GO:0005654	nucleoplasm	Database	INF
Category members	GO Category	GO:0006325	chromatin organization	Database	5.02
Category members	GO Category	GO:0005694	chromosome	Database	3.87
Category members	GO Category	GO:0003677	DNA binding	Database	1.53
Category members	GO Category	GO:0006351	transcription, DNA-templated	Database	1.07
Category members	GO Category	GO:0007049	cell cycle	Database	0.69
Category members	GO Category	GO:0003700	sequence-specific DNA binding transcription factor activity	Database	0.63
Category members	Pathway	Pathway_53	REACTOME_HEMOSTASIS	0	0.4
Category members	GO Category	GO:0007596	blood coagulation	Database	0.4
Category members	GO Category	GO:0046982	protein heterodimerization activity	Database	0.28
Category members	GO Category	GO:0016568	chromatin modification	Database	0.18
Category members	Pathway	Pathway_385	REACTOME_FACTORS_INVOLVED_IN_MEGAKARYOCYTE_DEVELOPMENT_AND_PLATELET_PRODUCTION	0	0.07
Category members	GO Category	GO:0006355	regulation of transcription, DNA-dependent	Database	0
Category members	GO Category	GO:0033234	negative regulation of protein sumoylation	Database	0
Category members	GO Category	GO:0035914	skeletal muscle cell differentiation	Database	0
Category members	GO Category	GO:0045666	positive regulation of neuron differentiation	Database	0