RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TOP1MT	2	1.650	-0.670	0.567	0.872	1.232	0.631	0.425
ACADVL	1	-2.840	5.470		-0.231	-0.461	0.539	0.664
HADHA	1	-1.770	3.360	0.007	-0.956	-0.181	0.499	0.477
ATP5B	1	2.320	-1.410	0.568	0.424	-1.201
SOD2	1	-0.340	0.140		2.161		-0.330
DNA2	1			1.707
SHMT2	1	-0.540	1.300	0.878	1.600	-2.560	0.964	0.784
VDAC1	1	-1.570	2.490		1.900	-1.029
VDAC1	1	-1.570	2.490	0.739
SLC25A5	0	1.020	-0.380	0.159	1.543	-0.331
CPS1	0	-0.030	-0.030
TFB1M	0	-0.660	0.560				-1.397	-0.586
TFB1M	0	-0.660	0.560		-1.153	-0.409
POLRMT	0	1.170	-0.470	0.871	-0.027	-0.204	0.279	0.072
DNAJA3	0	-0.010	-0.240	0.786	0.226	-0.161	-0.800	-0.347
C10orf2	0	-0.470	0.220				1.219	0.017
TFAM	0	1.980	-1.290		0.204	0.244	0.179	0.349
LRRC59	0	-0.490	0.760	0.186	0.127	-1.028	0.061	-0.133
HSPA9	0	-0.110	-0.790	0.452	0.066	-0.024	0.697	0.588
MTERF1	0	1.060	-0.030				0.518	0.771
DHX30	0	-0.190	-0.330	0.558	0.171	-0.062	-0.410	-0.010
GRSF1	0	1.010	-0.710	0.775	0.625	-0.778	-0.386	-0.048
UQCC2	0	1.080	-0.800				1.100
DBT	0	0.130	0.480	0.553	-0.166	0.339	0.082
HADHB	0	1.190	-0.950	0.120	-0.958	-0.345	0.537	0.132
LRPPRC	0	0.110	-0.740	-0.075	0.032	-0.336	0.525	0.443
POLG	0	1.190	-0.550		-1.116		-0.380	0.081
SUPV3L1	0	1.500	-0.040	0.342	0.274	0.234	0.059	0.110
TFB2M	0	1.660	-0.880				-0.459	-0.776
VDAC2	0	-0.270	0.880		1.276	-0.710
CLPX	0	-0.810	0.690	0.324	0.554	-0.550	0.057	-0.027
TEFM	0	0.070	0.580
TRMT10C	0	0.620	-0.620	1.396	-0.084	-0.311	0.274	0.484
TUFM	0	0.660	-0.360	0.254	0.270	-0.618	0.336	0.344
DDX28	0	0.800	-0.930				-0.987	-0.123
LONP1	0	-0.080	-0.060	0.483	0.449	-1.109	1.066	0.781
ATAD3A	0	0.850	-0.370	-0.370			0.372	0.190
ATAD3A	0	0.850	-0.370		0.424	0.052

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATP5B	Ubiquitylation	K55		-1.344	_DYAAQTSPSPK(gl)AGAATGR_
ATP5B	Ubiquitylation	K426		-0.601	_GVQK(gl)ILQDYK_
ATP5B	Phosphorylation	S465		-1.223	_FLS(ph)QPFQVAEVFTGHMGK_
C10orf2	Ubiquitylation	K633	-0.146		_NSLTFSIPPK(gl)_
CPS1	Phosphorylation	S1278	-0.511	-1.077	_ASRSFPFVS(ph)K_
DHX30	Phosphorylation	S225	0.661	0.414	_GS(ph)SFEMTDDDSAIR_
DHX30	Phosphorylation	S226	1.133	0.621	_GSS(ph)FEMTDDDSAIR_
DNA2	Ubiquitylation	K589		-1.040	_LMENTFVSK(gl)K_
DNA2	Ubiquitylation	K590		-1.040	_LMENTFVSK(gl)K_
DNA2	Ubiquitylation	K811		-0.860	_ALGMSESLFK(gl)R_
GRSF1	Ubiquitylation	K242	0.232	-0.120	_SLQVK(gl)SSPVVNDGVVR_
HSPA9	Ubiquitylation	K368	-0.622	-0.734	_TIAPCQK(gl)AMQDAEVSK_
LRRC59	Ubiquitylation	K71		1.075	_LDLSK(gl)NK_
LRRC59	Ubiquitylation	K73	0.595	1.075	_NK(gl)LQQLPADFGR_
LRRC59	Ubiquitylation	K116	-0.769		_WLDLK(gl)DNPLDPVLAK_
LRRC59	Ubiquitylation	K135	0.713	0.904	_VAGDCLDEK(gl)QCK_
LRRC59	Ubiquitylation	K149	1.351		_VLQHMK(gl)AVQADQER_
LRRC59	Ubiquitylation	K207	1.431		_EYDALK(gl)AAK_
POLG	Ubiquitylation	K371		-2.064	_LYVGGPPLEK(gl)EPR_
POLG	Ubiquitylation	K990		-1.545	_AQQMYAATK(gl)GLR_
SHMT2	Ubiquitylation	K103	-2.726	-0.554	_YSEGYPGK(gl)R_
SHMT2	Ubiquitylation	K280		-0.564	_HADIVTTTTHK(gl)TLR_
SHMT2	Ubiquitylation	K356		1.096	_EYSLQVLK(gl)NAR_
SHMT2	Ubiquitylation	K409		0.692	_VLELVSITANK(gl)NTCPGDR_
SHMT2	Ubiquitylation	K469		-0.436	_LQDFK(gl)SFLLK_
SHMT2	Ubiquitylation	K474	-1.113	-0.594	_SFLLK(gl)DSETSQR_
SLC25A5	Ubiquitylation	K74		0.478	_QITADK(gl)QYK_
SLC25A5	Ubiquitylation	K77		0.200	_QYK(gl)GIIDCVVR_
SLC25A5	Ubiquitylation	K88	-2.095		_IPK(gl)EQGVLSFWR_
SLC25A5	Ubiquitylation	K130	-0.918	1.293	_QIFLGGVDK(gl)R_
SLC25A5	Ubiquitylation	K172	-1.978	-0.228	_LAADVGK(gl)AGAER_
SLC25A5	Ubiquitylation	K188		0.764	_GLGDCLVK(gl)IYK_
SLC25A5	Ubiquitylation	K191		0.215	_IYK(gl)SDGIK_
SLC25A5	Ubiquitylation	K270	-2.134		_K(gl)GTDIMYTGTLDCWR_
SLC25A5	Ubiquitylation	K293	-1.774	0.323	_DEGGK(gl)AFFK_
SUPV3L1	Phosphorylation	S725	-0.599	-0.964	_ATEPPS(ph)PDAGELSLASR_
TEFM	Ubiquitylation	K137	0.588		_STVQVCNSILCPK(gl)TGR_
TFAM	Ubiquitylation	K76	-1.169		_AQNPDAK(gl)TTELIR_
TFAM	Phosphorylation	S193	1.208	1.236	_NLS(ph)DSEKELYIQHAK_
TFAM	Phosphorylation	S195	0.801	1.180	_NLSDS(ph)EKELYIQHAK_
TOP1MT	Ubiquitylation	K245	2.277		_FYYDGK(gl)VMK_
TOP1MT	Ubiquitylation	K252		1.900	_LSPK(gl)AEEVATFFAK_
TOP1MT	Ubiquitylation	K391	0.019		_DAK(gl)VPSPPPGHK_
TOP1MT	Ubiquitylation	K545	2.178		_YYNKVPVEK(gl)R_
TOP1MT	Ubiquitylation	K642	2.317		_TFEK(gl)SMMNLQTK_
TUFM	Ubiquitylation	K48		-0.221	_GLAVEAK(gl)K_
TUFM	Ubiquitylation	K49		-0.221	_GLAVEAK(gl)K_
VDAC1	Ubiquitylation	K20	0.718	0.885	_DVFTK(gl)GYGFGLIK_
VDAC1	Ubiquitylation	K61		1.135	_VTGSLETK(gl)YR_
VDAC1	Phosphorylation	S102	0.928	0.928	_LTFDSS(ph)FSPNTGKK_
VDAC1	Phosphorylation	S104	0.569	0.615	_LTFDSSFS(ph)PNTGK_
VDAC1	Phosphorylation	T107		0.493	_LTFDSSFSPNT(ph)GKK_
VDAC1	Ubiquitylation	K109	0.352		_LTFDSSFSPNTGK(gl)K_
VDAC1	Ubiquitylation	K110	0.406	0.270	_LTFDSSFSPNTGKK(gl)_
VDAC1	Ubiquitylation	K274	0.839		_NVNAGGHK(gl)LGLGLEFQA_
VDAC2	Ubiquitylation	K31	0.529		_DIFNK(gl)GFGFGLVK_
VDAC2	Ubiquitylation	K74		-0.220	_VTGTLETKYK(gl)_
VDAC2	Phosphorylation	T112	0.429		_LTFDT(ph)TFSPNTGKK_
VDAC2	Phosphorylation	S115	0.635	0.506	_LTFDTTFS(ph)PNTGK_
VDAC2	Ubiquitylation	K120		-0.029	_LTFDTTFSPNTGK(gl)K_
VDAC2	Ubiquitylation	K121	0.266	0.090	_LTFDTTFSPNTGKK(gl)_
VDAC2	Ubiquitylation	K285	0.885		_SINAGGHK(gl)VGLALELEA_