bioLOGIC-db

bioLOGIC Data

Query: TFB2M

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
TFB2M	0	-1.235	1.660	-0.880				-0.459	-0.776

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence

ProteomicsDB-TFB2M »

Protein-protein Interactions for TFB2M

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait AZI1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait GAR1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait GPKOW	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait NEK2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait NUP188	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait PPP2CA	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait RAB4B	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait SAMM50	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait TNPO1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait TUBG1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait CD70	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in TFB2M

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	rRNA_Ade_methylase_transferase	IPR001737	0.44
Category members	rRNA_Ade_methylase_Trfase_N	IPR020598	0.44
Category members	SAM-dependent_MTases-like	IPR029063	0.04

Protein complexes (CORUM database) featuring TFB2M

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)

Categories featuring TFB2M

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0003723	RNA binding	Database	INF
Category members	GO Category	GO:0010467	gene expression	Database	INF
Category members	Pathway	Pathway_348	REACTOME_TRANSCRIPTION	0	9
Category members	Pathway	Pathway_350	REACTOME_RNA_POL_I_RNA_POL_III_AND_MITOCHONDRIAL_TRANSCRIPTION	0	7.97
Category members	GO Category	GO:0005739	mitochondrion	Database	1.67
Category members	GO Category	GO:0000179	rRNA (adenine-N6,N6-)-dimethyltransferase activity	Database	0.82
Category members	GO Category	GO:0042645	mitochondrial nucleoid	Database	0.61
Category members	GO Category	GO:0005759	mitochondrial matrix	Database	0.59
Category members	GO Category	GO:0000154	rRNA modification	Database	0.44
Category members	GO Category	GO:0045893	positive regulation of transcription, DNA-dependent	Database	0.28
Category members	GO Category	GO:0003712	transcription cofactor activity	Database	0.21
Category members	GO Category	GO:0006390	transcription from mitochondrial promoter	Database	0.07
Category members	GO Category	GO:0031167	rRNA methylation	Database	0.05
Category members	GO Category	GO:0008649	rRNA methyltransferase activity	Database	0.04
Category members	GO Category	GO:0006355	regulation of transcription, DNA-dependent	Database	0
Category members	GO Category	GO:0006391	transcription initiation from mitochondrial promoter	Database	0