RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
THRAP3	3	1.430	-0.880	0.813	-0.969	0.662	0.407	0.317
SND1	2	-1.870	3.140	1.017	1.256	-1.516
MED24	1	-1.120	1.330	-0.351	-0.190	0.792		-0.333
MED17	1	0.700	-0.990	-1.647		1.651	-0.170	-0.346
TRIP13	1	-0.240	0.310	0.317				1.501
PSMC5	1	0.000	-0.100
PSMC5	1	0.000	-0.100	-0.084		0.014	0.198	-0.612
KAT2B	1	-0.980	2.090
MSX2	1	-0.260	0.240
MED1	1	0.780	-0.520				-1.530	-0.219
MED4	1	-1.480	2.730
MED30	1	2.100	-1.330
MED16	1	-0.070	-0.120	-0.498	0.991	1.893	-1.924	-1.039
MED14	1	-0.700	0.420	-2.483	0.951	1.842	-1.302	-0.509
TRRAP	1	0.160	-0.850	-0.022			-0.416	0.113
CREBBP	0	0.840	-0.950				-3.889	-1.071
DDX1	0	-0.100	0.160	-0.034	-0.036	0.487	-0.133	0.258
NFE2L1	0	-0.230	1.010			0.203
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
SUPT20H	0	-0.030	0.100					-0.029
TADA2A	0
MED13	0	0.640	-0.690
AIP	0	-1.080	1.700				0.039	-0.037
CREB1	0	1.080	-0.800			-1.027
MAX	0	-0.780	0.530		-0.276	0.290
MAX	0	-0.780	0.530
IRF3	0	-0.190	-0.050
BTG1	0
TMF1	0	1.240	-1.110				0.028	0.252
PTPN14	0	-0.710	0.480
ELK4	0	0.620	-0.960
TFB2M	0	1.660	-0.880				-0.459	-0.776
NSD1	0	-0.750	1.060				-0.118	-0.211
LDB2	0			-1.168
MED12	0	-0.180	-0.500				-1.501	-0.491

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AIP	Ubiquitylation	K112		-0.554	_NIAVGK(gl)DPLEGQR_
BTG1	Ubiquitylation	K150		0.279	_ISCK(gl)EELLLGR_
CREB1	Phosphorylation	S271	-0.979	-1.450	_TAPTSTIAPGVVM(ox)ASS(ph)PALPTQPAEEAAR_
CREB1	Ubiquitylation	K333	1.343		_ALK(gl)DLYCHK_
CREBBP	Phosphorylation	S2093	0.037	0.097	_SIS(ph)PSALQDLLR_
DDX1	Ubiquitylation	K82		-0.137	_TTIK(gl)TGASVLNK_
DDX1	Ubiquitylation	K117	1.370		_EVK(gl)EWHGCR_
DDX1	Ubiquitylation	K173	1.499		_FGFGFGGTGKK(gl)_
DDX1	Ubiquitylation	K260	-0.585		_DGFVALSK(gl)APDGYIVK_
DDX1	Ubiquitylation	K281	0.294		_SQHSGNAQVTQTK(gl)FLPNAPK_
DDX1	Ubiquitylation	K358	1.293		_LDDLVSTGK(gl)LNLSQVR_
DDX1	Phosphorylation	S481	0.023	0.050	_DNTRPGANS(ph)PEMWSEAIK_
ELK4	Phosphorylation	S305		-0.891	_KPPVEPVAATISIGPSIS(ph)PSSEETIQALETLVSPK_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
IRF3	Phosphorylation	S173	-0.663	-1.111	_S(ph)PSLDNPTPFPNLGPSENPLK_
IRF3	Phosphorylation	S175	-0.663	-0.661	_S(ph)PSLDNPTPFPNLGPSENPLKR_
IRF3	Ubiquitylation	K193	-3.309	-3.157	_SPSLDNPTPFPNLGPSENPLK(gl)R_
KAT2B	Phosphorylation	S117		2.088	_NPNPS(ph)PTPPR_
LDB2	Ubiquitylation	K76		-0.052	_IFELNK(gl)R_
LDB2	Ubiquitylation	K271		-0.154	_DCLK(gl)TCLFQK_
LDB2	Ubiquitylation	K277	-1.611	-0.630	_TCLFQK(gl)WQR_
LDB2	Phosphorylation	S323	-0.402	-0.031	_KS(ph)PASTFALSSQVPDVMVVGEPTLMGGEFGDEDER_
MAX	Phosphorylation	S2	0.341	-0.060	_(ac)S(ph)DNDDIEVES(ph)DEEQPR_
MAX	Phosphorylation	S2	0.510	0.568	_(ac)S(ph)DNDDIEVESDADKR_
MAX	Phosphorylation	S11	0.341	-0.060	_(ac)S(ph)DNDDIEVES(ph)DEEQPR_
MAX	Phosphorylation	S11	-0.408	0.069	_(ac)S(ph)DNDDIEVES(ph)DADKR_
MAX	Ubiquitylation	K57	-0.903	0.246	_DSVPSLQGEK(gl)ASR_
MED1	Phosphorylation	S664		3.368	_DNPAQDFSTLYGSS(ph)PLER_
MED1	Phosphorylation	S771	-1.422		_LSS(ph)SDSIGPDVTDILSDIAEEASKLPSTSDDCPAIGTPLR_
MED1	Phosphorylation	T1051	-1.201	-1.247	_SQT(ph)PPGVATPPIPK_
MED1	Phosphorylation	T1057		-1.294	_SQT(ph)PPGVAT(ph)PPIPK_
MED1	Phosphorylation	S1155	0.689		_NSSQSGGKPGS(ph)SPITK_
MED1	Phosphorylation	S1156	0.829	1.055	_NSSQSGGKPGSS(ph)PITK_
MED1	Phosphorylation	S1192		-0.792	_PSSLM(ox)NPSLSKPNIS(ph)PSHSRPPGGSDK_
MED1	Phosphorylation	S1223	1.061	1.013	_AKS(ph)PISSGSGGSHM(ox)SGTSSSSGM(ox)K_
MED1	Phosphorylation	S1433	-0.191		_NYGS(ph)PLISGSTPK_
MED12	Ubiquitylation	K429		-0.439	_EIEQQIK(gl)ER_
MED12	Ubiquitylation	K531		-0.272	_AMVVAKLLEK(gl)_
MED12	Phosphorylation	S635	-1.278	-0.801	_GDLAFGAPGPRPPS(ph)PFDDPADDPEHK_
MED12	Ubiquitylation	K1001		-1.092	_VK(gl)NTIYCNVEPSESNMR_
MED12	Ubiquitylation	K1661		-1.781	_DVITCEPQGSLIDTK(gl)GNK_
MED12	Ubiquitylation	K1682		-0.745	_EGLQVSTK(gl)QK_
MED12	Ubiquitylation	K1684		-0.960	_EGLQVSTK(gl)QK_
MED13	Phosphorylation	S890		0.092	_IEVDEGFCS(ph)PKPSEIK_
MED13	Ubiquitylation	K1890		0.843	_NLQSLSK(gl)R_
MED14	Ubiquitylation	K176		-0.354	_DK(gl)IIPPDPITK_
MED14	Ubiquitylation	K487		0.044	_SVNDDMK(gl)R_
MED14	Ubiquitylation	K699		-0.410	_GITEETQK(gl)ALDR_
MED14	Phosphorylation	S986	-1.229	-1.699	_SVNEDDNPPS(ph)PIGGDM(ox)MDSLISQLQPPPQQQPFPK_
MED14	Ubiquitylation	K1256		-1.340	_VALSPK(gl)TNQTLQLK_
MED16	Ubiquitylation	K158		-0.972	_SGASSFGEK(gl)FSR_
MED16	Ubiquitylation	K252		-0.659	_VCVSVVSEK(gl)CR_
MED16	Ubiquitylation	K796		-1.345	_LHLGACPTEECK(gl)ACTR_
MED16	Ubiquitylation	K817		-0.515	_TTAVK(gl)QWEQR_
MED24	Phosphorylation	S862	1.164	0.238	_LLS(ph)SNEDDANILSS(ph)PTDR_
MED24	Phosphorylation	S863	2.413		_LLSS(ph)NEDDANILSS(ph)PTDR_
MED24	Phosphorylation	S873	0.174	0.861	_LLSSNEDDANILSS(ph)PTDR_
MED30	Phosphorylation	S2	-0.188	-0.097	_(ac)S(ph)TPPLAASGMAPGPFAGPQAQQAAR_
MED30	Phosphorylation	T3	-0.188	-0.624	_(ac)ST(ph)PPLAASGMAPGPFAGPQAQQAAR_
MED4	Ubiquitylation	K112		0.878	_DSDIQQLQK(gl)QLK_
MED4	Ubiquitylation	K150	-0.369		_KGAISSEEIIK(gl)YAHR_
MSX2	Phosphorylation	S3	-1.986	-1.774	_(ac)AS(ph)PSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S5	-1.986		_AS(ph)PS(ph)KGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S63		3.351	_EAS(ph)PLPAESASAGATLRPLLLSGHGAR_
MSX2	Phosphorylation	S91	-0.783	-0.727	_EAHS(ph)PGPLVKPFETASVK_
MSX2	Phosphorylation	S123		-0.062	_SENSEDGAAWMQEPGRYS(ph)PPPR_
NFE2L1	Ubiquitylation	K218		-0.644	_QK(gl)EQDVEKELR_
NSD1	Phosphorylation	S1510		0.148	_TATS(ph)PKETVEEGVEHDPGMPASK_
NSD1	Phosphorylation	S2471	-0.515	-0.677	_AAS(ph)PHQVTPQADEK_
PSMC5	Ubiquitylation	K7	0.167		_(ac)MELEEGK(gl)AGSGLR_
PSMC5	Ubiquitylation	K15	-0.747	0.003	_(ac)ALDGPEQMELEEGK(gl)AGSGLR_
PSMC5	Ubiquitylation	K55	-0.538	-0.039	_NELNAK(gl)VR_
PSMC5	Ubiquitylation	K88	-0.430	-0.397	_VLVK(gl)VHPEGK_
PSMC5	Ubiquitylation	K101	-1.062		_FVVDVDK(gl)NIDINDVTPNCR_
PSMC5	Ubiquitylation	K130	-0.243		_ILPNK(gl)VDPLVSLMMVEK_
PSMC5	Ubiquitylation	K330		2.949	_LDILK(gl)IHSR_
PSMC5	Ubiquitylation	K346	0.008		_K(gl)IAELMPGASGAEVK_
PSMC5	Ubiquitylation	K397	0.415	0.779	_DSEK(gl)NMSIK_
PSMC5	Ubiquitylation	K402	0.363		_DSEK(gl)NMSIKK_
PTPN14	Phosphorylation	S312	-0.938		_ICTEQS(ph)NSPPPIR_
PTPN14	Phosphorylation	S314	-1.124	-0.564	_ICTEQSNS(ph)PPPIR_
PTPN14	Phosphorylation	S578	-0.193	-0.161	_PATS(ph)TPDLASHR_
PTPN14	Phosphorylation	T579	-0.068	-0.833	_PATST(ph)PDLASHR_
PTPN14	Phosphorylation	S594	0.146	0.213	_YVSGSS(ph)PDLVTR_
PTPN14	Phosphorylation	S642		0.429	_RHS(ph)LEVM(ox)NSM(ox)VR_
SND1	Ubiquitylation	K393	0.390		_DYVAPTANLDQK(gl)DKQFVAK_
SND1	Ubiquitylation	K395	-0.551		_DYVAPTANLDQK(gl)DK_
SND1	Phosphorylation	S480	-0.486	-0.110	_KVNVTVDYIRPAS(ph)PATETVPAFSER_
SND1	Ubiquitylation	K567	1.756	0.671	_VADISGDTQK(gl)AK_
SND1	Ubiquitylation	K569	0.149		_AK(gl)QFLPFLQR_
SND1	Ubiquitylation	K695	0.801	0.852	_SSYYK(gl)SLLSAEEAAK_
SND1	Ubiquitylation	K806	0.020		_ARVEK(gl)VESPAK_
SND1	Ubiquitylation	K940	0.592	-0.128	_VITEYLNAQESAK(gl)SAR_
SUPT20H	Ubiquitylation	K226		-0.873	_LLYNK(gl)QK_
SUPT20H	Ubiquitylation	K294		-1.057	_AGNCVDMWK(gl)R_
SUPT20H	Phosphorylation	S378		0.675	_ADEESDS(ph)QMSPSHSSTDDHSNWFIIGSK_
SUPT20H	Phosphorylation	T494	-1.141	-1.685	_SPT(ph)PPPSSKPSSIPR_
TADA2A	Ubiquitylation	K407		-1.091	_SALLNECNK(gl)QGGLR_
THRAP3	Phosphorylation	S184	0.079	0.248	_SSS(ph)KDSRPSQAAGDNQGDEAK_
THRAP3	Phosphorylation	T210	3.824		_EQTFSGGT(ph)SQDTK_
THRAP3	Phosphorylation	S211	3.487	3.148	_EQTFSGGTS(ph)QDTK_
THRAP3	Phosphorylation	S232	-0.501	-0.585	_ASESSKPWPDATYGTGS(ph)ASR_
THRAP3	Phosphorylation	S243	0.422	0.427	_ASAVSELS(ph)PR_
THRAP3	Phosphorylation	S248	0.461	0.278	_ERS(ph)PALKSPLQSVVVR_
THRAP3	Phosphorylation	S253	0.721	1.235	_SPALKS(ph)PLQSVVVR_
THRAP3	Phosphorylation	S315		0.541	_KS(ph)PVGKS(ph)PPSTGSTYGSSQK_
THRAP3	Phosphorylation	S320	-0.234	-0.545	_KSPVGKS(ph)PPSTGSTYGSSQK_
THRAP3	Phosphorylation	S377	2.629	2.451	_IKEKGS(ph)FSDTGLGDGK_
THRAP3	Phosphorylation	S379	0.975	1.024	_GSFS(ph)DTGLGDGK_
THRAP3	Phosphorylation	S575	1.245	0.792	_MDS(ph)FDEDLARPSGLLAQER_
THRAP3	Phosphorylation	S672	0.274	0.190	_NKKS(ph)PEIHR_
THRAP3	Phosphorylation	S682	0.380	0.508	_IDIS(ph)PSTFR_
THRAP3	Phosphorylation	S684	0.619	0.637	_RIDISPS(ph)TFRK_
THRAP3	Phosphorylation	T874	-1.185	-1.519	_NREEEWDPEYT(ph)PK_
THRAP3	Phosphorylation	S928	0.752	0.713	_WAHDKFS(ph)GEEGEIEDDESGTENR_
THRAP3	Phosphorylation	S939	0.345	0.471	_FSGEEGEIEDDES(ph)GTENR_
THRAP3	Phosphorylation	T953	-0.085		_FSGEEGEIEDDESGTENREEKDNIQPT(ph)TE_
TMF1	Phosphorylation	S160		-1.216	_DSSLCVS(ph)GETLAAGTSSPK_
TMF1	Phosphorylation	S344	0.779	-0.050	_SVSEINS(ph)DDELSGK_
TMF1	Phosphorylation	S399	-0.276	-0.307	_S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_
TMF1	Phosphorylation	T401	-0.276	-0.307	_S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_
TRIP13	Ubiquitylation	K34	-0.989	-0.620	_GSSTAK(gl)KEDINLSVR_
TRIP13	Ubiquitylation	K195		-0.753	_ALAQK(gl)LTIR_