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Query: SND1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SND1 2 5.909 -1.870 3.140 1.017 1.256 -1.516

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SND1 Ubiquitylation K695 0.801 0.852 _SSYYK(gl)SLLSAEEAAK_
SND1 Ubiquitylation K567 1.756 0.671 _VADISGDTQK(gl)AK_
SND1 Phosphorylation S480 -0.486 -0.110 _KVNVTVDYIRPAS(ph)PATETVPAFSER_
SND1 Ubiquitylation K940 0.592 -0.128 _VITEYLNAQESAK(gl)SAR_
SND1 Ubiquitylation K393 0.390 _DYVAPTANLDQK(gl)DKQFVAK_
SND1 Ubiquitylation K395 -0.551 _DYVAPTANLDQK(gl)DK_
SND1 Ubiquitylation K569 0.149 _AK(gl)QFLPFLQR_
SND1 Ubiquitylation K806 0.020 _ARVEK(gl)VESPAK_

Background Information for SND1:


Pubmed-SND1 »
Uniprot-SND1 »
Biogrid-SND1 »
ProteomicsDB-SND1 »

Tumorportal-SND1 »
COSMIC-SND1 »
GenomeRNAi-SND1 »
Genecards-SND1


Protein-protein Interactions for SND1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CNOT1 Cat. description Hein, Mann, Cell 2015
Category members IP bait EIF3A Cat. description Hein, Mann, Cell 2015
Category members IP bait HNRNPU Cat. description Hein, Mann, Cell 2015
Category members IP bait NPM1 Cat. description Hein, Mann, Cell 2015
Category members IP bait PABPC1 Cat. description Hein, Mann, Cell 2015
Category members IP bait RPL10 Cat. description Hein, Mann, Cell 2015
Category members IP bait RPL35 Cat. description Hein, Mann, Cell 2015
Category members IP bait RRBP1 Cat. description Hein, Mann, Cell 2015
Category members IP bait SRP72 Cat. description Hein, Mann, Cell 2015
Category members IP bait MTDH Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SND1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Tudor IPR002999 0.28
Category members Staphylococal_nuclease_OB-fold IPR016071 0


Protein complexes (CORUM database) featuring SND1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 3129 STAT6-p100-RHA complex Database 0


Categories featuring SND1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members DDR Literature pubmedid:TBD2_UV_increased Elia et al, 2015 UV increased acetylation events Elia et al. INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0019048 modulation by virus of host morphology or physiology Database 7.81
Category members GO Category GO:0042470 melanosome Database 5.59
Category members GO Category GO:0005739 mitochondrion Database 1.67
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0003712 transcription cofactor activity Database 0.21
Category members Pathway Pathway_210 PID_CMYB_PATHWAY 0 0.2
Category members GO Category GO:0016442 RISC complex Database 0.18
Category members GO Category GO:0004518 nuclease activity Database 0.09
Category members GO Category GO:0006355 regulation of transcription, DNA-dependent Database 0
Category members GO Category GO:0016788 hydrolase activity, acting on ester bonds Database 0
Category members GO Category GO:0031047 gene silencing by RNA Database 0


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