RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RAD50	3	0.350	-0.420	0.165	0.571	0.509	0.691	0.587
SND1	2	-1.870	3.140	1.017	1.256	-1.516
ERCC5	1	-2.410	5.420
DNA2	1			1.707
MRE11A	0	1.600	-0.730		0.145	0.420
MRE11A	0	1.600	-0.730	0.023			0.453	0.150
DDX1	0	-0.100	0.160	-0.034	-0.036	0.487	-0.133	0.258
XRN2	0	1.050	-0.930	-2.506	-1.121	-0.161	-0.293	-0.304
APEX1	0	0.630	-0.180				-0.057	-0.077
TDP2	0	0.200	-0.360
PARN	0	-1.190	1.560		0.653	-0.013	-0.219	0.283
EME1	0
FEN1	0	-1.360	2.210	0.895	1.036	-1.389	-0.361	-0.414
APEX2	0	-0.680	0.420
MUS81	0
EXO1	0	0.890	-0.810
ERCC4	0							1.257
EME2	0

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
APEX1	Ubiquitylation	K25	-0.227		_GAVAEDGDELRTEPEAKK(gl)_
APEX1	Ubiquitylation	K58	-0.215		_TSPSGK(gl)PATLK_
APEX2	Ubiquitylation	K371	0.281	-0.420	_VQTCQNK(gl)AQVR_
APEX2	Ubiquitylation	K482	-0.126		_TVK(gl)KPGPNLGR_
DDX1	Ubiquitylation	K82		-0.137	_TTIK(gl)TGASVLNK_
DDX1	Ubiquitylation	K117	1.370		_EVK(gl)EWHGCR_
DDX1	Ubiquitylation	K173	1.499		_FGFGFGGTGKK(gl)_
DDX1	Ubiquitylation	K260	-0.585		_DGFVALSK(gl)APDGYIVK_
DDX1	Ubiquitylation	K281	0.294		_SQHSGNAQVTQTK(gl)FLPNAPK_
DDX1	Ubiquitylation	K358	1.293		_LDDLVSTGK(gl)LNLSQVR_
DDX1	Phosphorylation	S481	0.023	0.050	_DNTRPGANS(ph)PEMWSEAIK_
DNA2	Ubiquitylation	K589		-1.040	_LMENTFVSK(gl)K_
DNA2	Ubiquitylation	K590		-1.040	_LMENTFVSK(gl)K_
DNA2	Ubiquitylation	K811		-0.860	_ALGMSESLFK(gl)R_
EME1	Ubiquitylation	K449	0.158		_AVAEAPFK(gl)_
EME1	Ubiquitylation	K450		0.225	_AVAEAPFKK(gl)_
EME2	Ubiquitylation	K72		0.929	_ALAQYPLK(gl)QYR_
ERCC5	Phosphorylation	S766	-0.289	-0.748	_LKTEKEPDATPPS(ph)PR_
ERCC5	Phosphorylation	S809	-0.115	0.693	_NAPAAVDEGSIS(ph)PR_
ERCC5	Ubiquitylation	K858	0.818	1.193	_INSSTENSDEGLK(gl)VR_
ERCC5	Phosphorylation	S951	-0.018	-0.048	_ELTPAS(ph)PTCTNSVSK_
ERCC5	Phosphorylation	S988	0.598	1.186	_FDSSLLSS(ph)DDETK_
EXO1	Phosphorylation	S598		0.826	_TIS(ph)PPTLGTLR_
FEN1	Ubiquitylation	K354	1.109		_VTGSLSSAK(gl)R_
MRE11A	Ubiquitylation	K387	0.442		_FSQK(gl)FVDR_
MUS81	Phosphorylation	S95	-0.268	-0.392	_TSGGDHAPDS(ph)PSGENSPAPQGR_
PARN	Phosphorylation	S557	0.812	0.283	_NNS(ph)FTAPSTVGK_
PARN	Phosphorylation	S619	0.501	0.675	_KELS(ph)PAGSISK_
RAD50	Ubiquitylation	K62	-1.069		_YICTGDFPPGTK(gl)GNTFVHDPK_
RAD50	Phosphorylation	S635	2.474	3.050	_LFDVCGS(ph)QDFESDLDR_
RAD50	Ubiquitylation	K753	0.394	0.397	_NK(gl)LQNVNR_
RAD50	Ubiquitylation	K933	0.397		_FQQEKEELINKK(gl)_
RAD50	Ubiquitylation	K1068	0.098		_LEENIDNIK(gl)R_
RAD50	Ubiquitylation	K1178	-0.548		_SDADENVSASDK(gl)RR_
RAD50	Ubiquitylation	K1285	2.195		_SEYVEK(gl)FYR_
SND1	Ubiquitylation	K393	0.390		_DYVAPTANLDQK(gl)DKQFVAK_
SND1	Ubiquitylation	K395	-0.551		_DYVAPTANLDQK(gl)DK_
SND1	Phosphorylation	S480	-0.486	-0.110	_KVNVTVDYIRPAS(ph)PATETVPAFSER_
SND1	Ubiquitylation	K567	1.756	0.671	_VADISGDTQK(gl)AK_
SND1	Ubiquitylation	K569	0.149		_AK(gl)QFLPFLQR_
SND1	Ubiquitylation	K695	0.801	0.852	_SSYYK(gl)SLLSAEEAAK_
SND1	Ubiquitylation	K806	0.020		_ARVEK(gl)VESPAK_
SND1	Ubiquitylation	K940	0.592	-0.128	_VITEYLNAQESAK(gl)SAR_
TDP2	Ubiquitylation	K23	-0.309	-0.581	_EAAEEEGEPEVK(gl)K_
TDP2	Ubiquitylation	K24	-0.914	-0.896	_EAAEEEGEPEVKK(gl)_
TDP2	Ubiquitylation	K82	-1.178	-1.657	_RPETISEPK(gl)TYVDLTNEETTDSTTSK_
TDP2	Ubiquitylation	K192	-0.116	-1.471	_LK(gl)SQEIIPFPSTK_
TDP2	Ubiquitylation	K203	-0.460	-0.913	_SQEIIPFPSTK(gl)MMR_
TDP2	Ubiquitylation	K341	-0.167		_SLDLLGLEK(gl)LDCGR_
XRN2	Ubiquitylation	K132		0.183	_EGMEAAVEK(gl)QR_
XRN2	Phosphorylation	T439	-0.332	-1.539	_RDQPAFTPSGILT(ph)PHALGSR_
XRN2	Phosphorylation	S448	0.425	0.037	_NS(ph)PGSQVASNPR_
XRN2	Phosphorylation	S473	0.104	-0.751	_MQNNSSPS(ph)ISPNTSFTSDGSPSPLGGIK_
XRN2	Phosphorylation	S475		0.436	_MQNNSSPSIS(ph)PNTSFTSDGSPSPLGGIK_
XRN2	Ubiquitylation	K493	-1.223		_MQNNSSPSISPNTSFTSDGSPSPLGGIK(gl)R_
XRN2	Phosphorylation	S499	-1.444		_AEDS(ph)DSEPEPEDNVR_
XRN2	Ubiquitylation	K533	0.431		_NKFDVDAADEK(gl)FR_