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Query: MED13

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
MED13 0 0.935 0.640 -0.690

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
MED13 Ubiquitylation K1890 0.843 _NLQSLSK(gl)R_
MED13 Phosphorylation S890 0.092 _IEVDEGFCS(ph)PKPSEIK_

Background Information for MED13:


Pubmed-MED13 »
Uniprot-MED13 »
Biogrid-MED13 »
ProteomicsDB-MED13 »

Tumorportal-MED13 »
COSMIC-MED13 »
GenomeRNAi-MED13 »
Genecards-MED13


Protein-protein Interactions for MED13
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CDK8 Cat. description Hein, Mann, Cell 2015
Category members IP bait MED12 Cat. description Hein, Mann, Cell 2015
Category members IP bait MED22 Cat. description Hein, Mann, Cell 2015
Category members IP bait CCNC Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CDK19 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CDK8 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MED1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MED18 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MED19 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MED21 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MED7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait NR1I3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TCL1B Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in MED13
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Mediator_Med13 IPR009401 0.04
Category members Mediator_Med13_N_met/fun IPR021643 0.04


Protein complexes (CORUM database) featuring MED13
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 230 Mediator complex Database 0.76
Category members Corum 535 TRAP complex Database 0.76
Category members Corum 5450 Mediator complex Database 0.45
Category members Corum 301 SMCC complex Database 0.45
Category members Corum 547 SMCC complex Database 0.31
Category members Corum 441 TFTC-type histone acetyl transferase complex Database 0.2
Category members Corum 909 ARC92-Mediator complex Database 0.13
Category members Corum 548 DRIP complex Database 0.08
Category members Corum 549 DRIP complex Database 0.08
Category members Corum 232 ARC complex Database 0.05
Category members Corum 287 ARC-L complex Database 0
Category members Corum 288 ARC complex Database 0


Categories featuring MED13
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005654 nucleoplasm Database INF
Category members GO Category GO:0010467 gene expression Database INF
Category members GO Category GO:0003713 transcription coactivator activity Database 3.68
Category members GO Category GO:0030521 androgen receptor signaling pathway Database 1.25
Category members GO Category GO:0016592 mediator complex Database 0.53
Category members GO Category GO:0045893 positive regulation of transcription, DNA-dependent Database 0.28
Category members GO Category GO:0006367 transcription initiation from RNA polymerase II promoter Database 0.25
Category members GO Category GO:0003712 transcription cofactor activity Database 0.21
Category members GO Category GO:0006357 regulation of transcription from RNA polymerase II promoter Database 0.19
Category members GO Category GO:0045944 positive regulation of transcription from RNA polymerase II promoter Database 0.13
Category members GO Category GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity Database 0.12
Category members GO Category GO:0001104 RNA polymerase II transcription cofactor activity Database 0.08
Category members GO Category GO:0046966 thyroid hormone receptor binding Database 0
Category members GO Category GO:0004872 receptor activity Database 0
Category members GO Category GO:0030518 intracellular steroid hormone receptor signaling pathway Database 0
Category members GO Category GO:0042809 vitamin D receptor binding Database 0


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