RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
THRAP3	3	1.430	-0.880	0.813	-0.969	0.662	0.407	0.317
FKBP4	2	0.540	-0.110	0.084			0.155	0.235
BRCA1	2	0.200	-0.140	0.433			0.018	0.146
UBE3A	2	-0.310	-0.470
MED24	1	-1.120	1.330	-0.351	-0.190	0.792		-0.333
MED17	1	0.700	-0.990	-1.647		1.651	-0.170	-0.346
KDM3A	1	-1.740	3.000
ARID1A	1	0.360	-0.350	0.683	0.272	0.870	-0.131	0.043
MED1	1	0.780	-0.520				-1.530	-0.219
RAN	1			0.795	0.949	-0.688	0.566	0.288
MED4	1	-1.480	2.730
NCOA2	1	-0.210	-0.230
MED30	1	2.100	-1.330
KAT5	1	3.690	-1.200
MED16	1	-0.070	-0.120	-0.498	0.991	1.893	-1.924	-1.039
MED14	1	-0.700	0.420	-2.483	0.951	1.842	-1.302	-0.509
RNF14	0	0.760	-1.260
PIAS1	0	-1.020	1.720	-1.034	-0.678	0.471	-0.051	1.019
RHOA	0	-0.510	1.370	-0.485			0.532	0.279
PIAS2	0	-0.510	0.250
PIAS2	0	-0.510	0.250	-1.034	-0.678	0.471	-0.051	1.019
PIAS2	0	-0.510	0.250
PIAS3	0	-1.170	1.310
NCOA1	0	1.240	-0.460
DNAJA1	0	0.120	-0.870	-0.002	-0.468	-0.020	-0.575	-0.008
CCNE1	0	0.460	-0.980
MED13	0	0.640	-0.690
NCOA3	0	0.000	-0.330
RB1	0	1.180	-1.070		0.429	0.755
RB1	0	1.180	-1.070
TGFB1I1	0	0.130	0.160
GRIP1	0	-0.360	0.430
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
MED12	0	-0.180	-0.500				-1.501	-0.491

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARID1A	Phosphorylation	S363	0.211	0.022	_SHHAPM(ox)S(ph)PGSSGGGGQPLAR_
ARID1A	Phosphorylation	S367	-0.142		_SHHAPMSPGSS(ph)GGGGQPLAR_
ARID1A	Phosphorylation	S381		0.335	_TPQPS(ph)SPMDQMGK_
ARID1A	Phosphorylation	S382	1.506	0.780	_TPQPSS(ph)PMDQMGK_
ARID1A	Phosphorylation	S696	-0.934	-0.737	_GPS(ph)PSPVGSPASVAQSR_
ARID1A	Phosphorylation	S702	0.267	-0.175	_GPS(ph)PSPVGS(ph)PASVAQSR_
ARID1A	Phosphorylation	S705	0.157		_GPS(ph)PSPVGSPAS(ph)VAQSR_
ARID1A	Phosphorylation	S772	-0.112	-0.485	_NPQMPQYSSPQPGSALS(ph)PR_
ARID1A	Phosphorylation	S1182	1.584	1.063	_S(ph)NSVGIQDAFNDGSDSTFQK_
ARID1A	Phosphorylation	S1184	1.732	1.114	_SNS(ph)VGIQDAFNDGSDSTFQK_
ARID1A	Phosphorylation	S1754	0.131	-0.654	_VS(ph)SPAPM(ox)EGGEEEEELLGPK_
ARID1A	Phosphorylation	S1755	-0.409	-0.587	_VSS(ph)PAPMEGGEEEEELLGPK_
ARID1A	Phosphorylation	S1944		-0.489	_FPFGIS(ph)PAQSHR_
BRCA1	Phosphorylation	S123	0.465	0.445	_KENNSPEHLKDEVS(ph)IIQSM(ox)GYR_
BRCA1	Phosphorylation	S753	2.662	4.077	_VSNNAEDPKDLMLS(ph)GER_
BRCA1	Phosphorylation	S1009	0.733	1.028	_KNLLEENFEEHSM(ox)S(ph)PER_
BRCA1	Phosphorylation	S1546	1.821	2.105	_NYPS(ph)QEELIK_
BRCA1	Phosphorylation	S1564		3.065	_VVDVEEQQLEES(ph)GPHDLTETSYLPR_
BRCA1	Phosphorylation	S1664		1.120	_EKPELTAS(ph)TER_
CCNE1	Phosphorylation	S100		-0.765	_IIAPS(ph)RGSPLPVLSWANR_
CCNE1	Phosphorylation	S103		-0.765	_IIAPS(ph)RGSPLPVLSWANR_
CCNE1	Phosphorylation	S387	0.705	-0.922	_AS(ph)PLPSGLLTPPQSGK_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
DNAJA1	Ubiquitylation	K32		0.112	_LALK(gl)YHPDKNPNEGEK_
DNAJA1	Ubiquitylation	K46		0.780	_FK(gl)QISQAYEVLSDAK_
DNAJA1	Ubiquitylation	K59	-0.126	0.382	_QISQAYEVLSDAK(gl)KR_
DNAJA1	Ubiquitylation	K60	-0.126	0.360	_QISQAYEVLSDAKK(gl)R_
DNAJA1	Ubiquitylation	K66	0.241	0.693	_ELYDK(gl)GGEQAIK_
DNAJA1	Ubiquitylation	K136	0.203	1.222	_NVICDK(gl)CEGR_
DNAJA1	Ubiquitylation	K144	-0.122	0.230	_K(gl)GAVECCPNCR_
DNAJA1	Phosphorylation	S335	-0.112	0.143	_VNFPENGFLS(ph)PDKLSLLEK_
FKBP4	Ubiquitylation	K28	-1.537		_ATESGAQSAPLPMEGVDISPK(gl)QDEGVLK_
FKBP4	Ubiquitylation	K282	1.052	1.457	_GTVYFK(gl)EGK_
FKBP4	Ubiquitylation	K354		1.353	_ALELDSNNEK(gl)GLFR_
FKBP4	Ubiquitylation	K387	-0.016		_VLQLYPNNK(gl)AAK_
FKBP4	Ubiquitylation	K390	1.528	2.262	_AAK(gl)TQLAVCQQR_
FKBP4	Ubiquitylation	K409	0.591		_K(gl)LYANMFER_
FKBP4	Ubiquitylation	K441	-0.410		_AEASSGDHPTDTEMK(gl)EEQK_
GRIP1	Phosphorylation	S43	0.361	0.201	_RQS(ph)IPEEFK_
GRIP1	Phosphorylation	S847	0.159	0.098	_GSLS(ph)PVTKPR_
KAT5	Ubiquitylation	K230		-0.079	_MK(gl)NIECIELGR_
KAT5	Ubiquitylation	K274		-0.149	_SLK(gl)CLQR_
KDM3A	Ubiquitylation	K851	-1.893		_NEIK(gl)CLPPLPPLSK_
MED1	Phosphorylation	S664		3.368	_DNPAQDFSTLYGSS(ph)PLER_
MED1	Phosphorylation	S771	-1.422		_LSS(ph)SDSIGPDVTDILSDIAEEASKLPSTSDDCPAIGTPLR_
MED1	Phosphorylation	T1051	-1.201	-1.247	_SQT(ph)PPGVATPPIPK_
MED1	Phosphorylation	T1057		-1.294	_SQT(ph)PPGVAT(ph)PPIPK_
MED1	Phosphorylation	S1155	0.689		_NSSQSGGKPGS(ph)SPITK_
MED1	Phosphorylation	S1156	0.829	1.055	_NSSQSGGKPGSS(ph)PITK_
MED1	Phosphorylation	S1192		-0.792	_PSSLM(ox)NPSLSKPNIS(ph)PSHSRPPGGSDK_
MED1	Phosphorylation	S1223	1.061	1.013	_AKS(ph)PISSGSGGSHM(ox)SGTSSSSGM(ox)K_
MED1	Phosphorylation	S1433	-0.191		_NYGS(ph)PLISGSTPK_
MED12	Ubiquitylation	K429		-0.439	_EIEQQIK(gl)ER_
MED12	Ubiquitylation	K531		-0.272	_AMVVAKLLEK(gl)_
MED12	Phosphorylation	S635	-1.278	-0.801	_GDLAFGAPGPRPPS(ph)PFDDPADDPEHK_
MED12	Ubiquitylation	K1001		-1.092	_VK(gl)NTIYCNVEPSESNMR_
MED12	Ubiquitylation	K1661		-1.781	_DVITCEPQGSLIDTK(gl)GNK_
MED12	Ubiquitylation	K1682		-0.745	_EGLQVSTK(gl)QK_
MED12	Ubiquitylation	K1684		-0.960	_EGLQVSTK(gl)QK_
MED13	Phosphorylation	S890		0.092	_IEVDEGFCS(ph)PKPSEIK_
MED13	Ubiquitylation	K1890		0.843	_NLQSLSK(gl)R_
MED14	Ubiquitylation	K176		-0.354	_DK(gl)IIPPDPITK_
MED14	Ubiquitylation	K487		0.044	_SVNDDMK(gl)R_
MED14	Ubiquitylation	K699		-0.410	_GITEETQK(gl)ALDR_
MED14	Phosphorylation	S986	-1.229	-1.699	_SVNEDDNPPS(ph)PIGGDM(ox)MDSLISQLQPPPQQQPFPK_
MED14	Ubiquitylation	K1256		-1.340	_VALSPK(gl)TNQTLQLK_
MED16	Ubiquitylation	K158		-0.972	_SGASSFGEK(gl)FSR_
MED16	Ubiquitylation	K252		-0.659	_VCVSVVSEK(gl)CR_
MED16	Ubiquitylation	K796		-1.345	_LHLGACPTEECK(gl)ACTR_
MED16	Ubiquitylation	K817		-0.515	_TTAVK(gl)QWEQR_
MED24	Phosphorylation	S862	1.164	0.238	_LLS(ph)SNEDDANILSS(ph)PTDR_
MED24	Phosphorylation	S863	2.413		_LLSS(ph)NEDDANILSS(ph)PTDR_
MED24	Phosphorylation	S873	0.174	0.861	_LLSSNEDDANILSS(ph)PTDR_
MED30	Phosphorylation	S2	-0.188	-0.097	_(ac)S(ph)TPPLAASGMAPGPFAGPQAQQAAR_
MED30	Phosphorylation	T3	-0.188	-0.624	_(ac)ST(ph)PPLAASGMAPGPFAGPQAQQAAR_
MED4	Ubiquitylation	K112		0.878	_DSDIQQLQK(gl)QLK_
MED4	Ubiquitylation	K150	-0.369		_KGAISSEEIIK(gl)YAHR_
NCOA1	Phosphorylation	S22	0.503	0.810	_KGS(ph)PCDTLASSTEK_
NCOA2	Phosphorylation	S699	-0.159	-0.104	_LLQDSSS(ph)PVDLAK_
NCOA2	Phosphorylation	S771	1.654	0.621	_LDS(ph)KTDPASNTK_
NCOA3	Phosphorylation	S861	-0.217	-0.429	_AVS(ph)LDSPVSVGSSPPVK_
NCOA3	Phosphorylation	S870	-0.416	-0.360	_AVS(ph)LDSPVSVGS(ph)SPPVK_
NCOA3	Phosphorylation	S1333		-0.364	_VSS(ph)PPNAMMSSR_
PIAS1	Ubiquitylation	K60		-1.191	_AGCSPAVQMKIK(gl)_
PIAS1	Ubiquitylation	K341		-1.248	_VSLLCPLGK(gl)MR_
PIAS1	Phosphorylation	S490	-0.898	-0.944	_RTCPSLSPTS(ph)PLNNK_
PIAS1	Phosphorylation	S505	0.198	-0.250	_GILSLPHQAS(ph)PVSR_
PIAS2	Ubiquitylation	K60		-1.191	_AGCSPAVQMKIK(gl)_
PIAS2	Ubiquitylation	K331		-0.867	_VSLMCPLGK(gl)MR_
PIAS2	Ubiquitylation	K341		-1.248	_VSLLCPLGK(gl)MR_
PIAS2	Ubiquitylation	K452		-1.175	_IESSSVLSK(gl)PCSVTVASEASK_
PIAS2	Phosphorylation	S490	-0.898	-0.944	_RTCPSLSPTS(ph)PLNNK_
PIAS2	Phosphorylation	S505	0.198	-0.250	_GILSLPHQAS(ph)PVSR_
PIAS3	Ubiquitylation	K331		-0.867	_VSLMCPLGK(gl)MR_
RAN	Ubiquitylation	K23	0.056		_LVLVGDGGTGK(gl)TTFVK_
RAN	Ubiquitylation	K37	0.841		_HLTGEFEK(gl)K_
RAN	Ubiquitylation	K60	-0.488	0.477	_GPIK(gl)FNVWDTAGQEK_
RAN	Ubiquitylation	K71	1.279		_FNVWDTAGQEK(gl)FGGLR_
RAN	Ubiquitylation	K116	-0.044	1.823	_VTYK(gl)NVPNWHR_
RAN	Ubiquitylation	K140	-0.020	0.586	_VCENIPIVLCGNK(gl)VDIK_
RAN	Ubiquitylation	K144	0.131	0.529	_VCENIPIVLCGNKVDIK(gl)DR_
RAN	Ubiquitylation	K147	0.000		_VCENIPIVLCGNKVDIKDRK(gl)_
RAN	Ubiquitylation	K151	1.342	0.712	_AK(gl)SIVFHR_
RAN	Ubiquitylation	K158	0.185	0.370	_K(gl)KNLQYYDISAK_
RAN	Ubiquitylation	K159	0.246	0.274	_K(gl)NLQYYDISAK_
RAN	Ubiquitylation	K176		1.593	_SNYNFEK(gl)PFLWLAR_
RB1	Phosphorylation	S69	-3.602	-3.397	_TAATAAAAAAEPPAPPPPPPPEEDPEQDS(ph)GPEDLPLVR_
RB1	Ubiquitylation	K97	-0.546		_LK(gl)IPDHVR_
RB1	Phosphorylation	T388	0.005	0.116	_TLQTDSIDSFETQRT(ph)PR_
RB1	Phosphorylation	T405	-0.851	-0.901	_KSNLDEEVNVIPPHT(ph)PVR_
RB1	Phosphorylation	S820		-0.019	_S(ph)PYKFPSSPLR_
RB1	Ubiquitylation	K823	-2.214		_SPYK(gl)FPSSPLR_
RB1	Phosphorylation	S827	0.824	0.111	_FPSS(ph)PLR_
RB1	Phosphorylation	S839	-0.701	-1.045	_IPGGNIYIS(ph)PLKS(ph)PYK_
RB1	Ubiquitylation	K842		-0.751	_IPGGNIYISPLK(gl)SPYK_
RB1	Phosphorylation	S843	-0.701	-0.022	_IPGGNIYIS(ph)PLKS(ph)PYK_
RB1	Ubiquitylation	K846	-2.084		_SPYK(gl)ISEGLPTPTK_
RB1	Phosphorylation	T853	0.039	-0.555	_ISEGLPT(ph)PTKM(ox)T(ph)PR_
RB1	Ubiquitylation	K856	-1.350		_ISEGLPTPTK(gl)MTPR_
RB1	Phosphorylation	T858	-0.782	0.564	_ISEGLPT(ph)PTKMT(ph)PR_
RB1	Ubiquitylation	K879	-0.187		_FQK(gl)INQMVCNSDR_
RHOA	Ubiquitylation	K6	0.708		_K(gl)KLVIVGDGACGK_
RHOA	Ubiquitylation	K7	0.708		_K(gl)KLVIVGDGACGK_
RHOA	Ubiquitylation	K118	-0.408		_HFCPNVPIILVGNK(gl)K_
RHOA	Ubiquitylation	K119	-0.408		_HFCPNVPIILVGNK(gl)K_
RHOA	Ubiquitylation	K135	-0.528	-0.796	_MK(gl)QEPVKPEEGRDMANR_
RHOA	Ubiquitylation	K162	0.345	0.453	_IGAFGYMECSAK(gl)TK_
RNF14	Phosphorylation	S162		0.511	_TAQAS(ph)PNTELDFGGAAGSDVDQEEIVDER_
RNF14	Phosphorylation	T165	0.314	0.975	_TAQASPNT(ph)ELDFGGAAGSDVDQEEIVDER_
RNF14	Phosphorylation	S348	0.227	0.173	_LTYHGVS(ph)PCK_
RNF14	Ubiquitylation	K372		0.156	_NEYLQADEANK(gl)R_
TGFB1I1	Phosphorylation	S68	-0.772	-0.697	_S(ph)PKPAAPAAPPFSSSSGVLGTGLCELDR_
THRAP3	Phosphorylation	S184	0.079	0.248	_SSS(ph)KDSRPSQAAGDNQGDEAK_
THRAP3	Phosphorylation	T210	3.824		_EQTFSGGT(ph)SQDTK_
THRAP3	Phosphorylation	S211	3.487	3.148	_EQTFSGGTS(ph)QDTK_
THRAP3	Phosphorylation	S232	-0.501	-0.585	_ASESSKPWPDATYGTGS(ph)ASR_
THRAP3	Phosphorylation	S243	0.422	0.427	_ASAVSELS(ph)PR_
THRAP3	Phosphorylation	S248	0.461	0.278	_ERS(ph)PALKSPLQSVVVR_
THRAP3	Phosphorylation	S253	0.721	1.235	_SPALKS(ph)PLQSVVVR_
THRAP3	Phosphorylation	S315		0.541	_KS(ph)PVGKS(ph)PPSTGSTYGSSQK_
THRAP3	Phosphorylation	S320	-0.234	-0.545	_KSPVGKS(ph)PPSTGSTYGSSQK_
THRAP3	Phosphorylation	S377	2.629	2.451	_IKEKGS(ph)FSDTGLGDGK_
THRAP3	Phosphorylation	S379	0.975	1.024	_GSFS(ph)DTGLGDGK_
THRAP3	Phosphorylation	S575	1.245	0.792	_MDS(ph)FDEDLARPSGLLAQER_
THRAP3	Phosphorylation	S672	0.274	0.190	_NKKS(ph)PEIHR_
THRAP3	Phosphorylation	S682	0.380	0.508	_IDIS(ph)PSTFR_
THRAP3	Phosphorylation	S684	0.619	0.637	_RIDISPS(ph)TFRK_
THRAP3	Phosphorylation	T874	-1.185	-1.519	_NREEEWDPEYT(ph)PK_
THRAP3	Phosphorylation	S928	0.752	0.713	_WAHDKFS(ph)GEEGEIEDDESGTENR_
THRAP3	Phosphorylation	S939	0.345	0.471	_FSGEEGEIEDDES(ph)GTENR_
THRAP3	Phosphorylation	T953	-0.085		_FSGEEGEIEDDESGTENREEKDNIQPT(ph)TE_
UBE3A	Ubiquitylation	K77	0.131	0.538	_ALELYK(gl)INAK_
UBE3A	Ubiquitylation	K89	-0.782		_LCDPHPSK(gl)K_
UBE3A	Ubiquitylation	K90	-0.804		_LCDPHPSKK(gl)_
UBE3A	Ubiquitylation	K112	-0.670		_GAPNNSCSEIK(gl)MNKK_
UBE3A	Ubiquitylation	K123	0.184		_IDFK(gl)DVTYLTEEK_
UBE3A	Phosphorylation	S218	3.592	3.254	_IGDSS(ph)QGDNNLQK_
UBE3A	Ubiquitylation	K315		-0.507	_AMSK(gl)LPLAAQGK_
UBE3A	Ubiquitylation	K323		-0.547	_LPLAAQGK(gl)LIR_
UBE3A	Ubiquitylation	K373	1.085	1.052	_NLVNDDDAIVAASK(gl)CLK_
UBE3A	Ubiquitylation	K552	-0.235	0.125	_LEMIAMENPADLK(gl)K_
UBE3A	Ubiquitylation	K553	-0.235	0.125	_LEMIAMENPADLK(gl)K_
UBE3A	Ubiquitylation	K824		0.226	_LK(gl)MIIAK_