RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
MSX2	1	-0.260	0.240
MACF1	1						-0.173	-0.431
MACF1	1						-0.599
MACF1	1			0.244			0.182	0.206
MACF1	1						0.796	0.236
RAF1	1	2.020	-1.230
POU2F3	1	-0.780	0.990
SDC2	1	-1.780	3.110
PDGFA	1	0.190	-0.340		-2.109	1.885
C6orf89	1	2.000	-1.000
DCBLD2	0	0.690	-0.380
SCARB1	0	0.990	-0.330
SCARB1	0	0.990	-0.330				-0.012	-0.480
MAP3K1	0	0.750	-1.270
DSP	0	-0.660	1.420			-2.938	-0.696	-0.240
TIMP1	0	0.660	-0.830
TGFB1	0	-0.550	1.050
GLI3	0	-0.980	1.650
TGFBR1	0	-0.260	0.020
PTK7	0	-0.240	0.340				-0.232	0.174
WNT5A	0
TGFB3	0	0.900	-0.540
TPM1	0	0.280	-0.190
ERBB2	0	-1.310	1.360
S100A8	0	-0.880	1.550			-3.285		-4.740
GSN	0	0.350	-0.590
PAK1	0	1.190	-0.630
MIA3	0	-0.480	0.870
MIA3	0	-0.480	0.870				0.112	0.137
VANGL2	0	-1.030	1.450
ITGA2	0	-0.370	0.660				0.847	0.435
SMAD3	0	-1.560	1.800
SMAD3	0	0.270	-0.340
NF1	0	1.000	-0.500				0.444	-0.190
FNTB	0

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
C6orf89	Ubiquitylation	K114		-0.337	_LMSLPIAKK(gl)_
C6orf89	Ubiquitylation	K262		-1.379	_DASLNK(gl)CSFLHPEPVVGSK_
DCBLD2	Ubiquitylation	K439		-1.031	_VNPTQWQQK(gl)IAMK_
DCBLD2	Ubiquitylation	K580	-0.063		_GMK(gl)QFLPAK_
DSP	Phosphorylation	S22	0.083	-0.070	_AES(ph)GPDLR_
DSP	Ubiquitylation	K94	0.120		_AELIVQPELK(gl)YGDGIQLTR_
DSP	Ubiquitylation	K140	0.440	0.037	_QMGQPCDAYQK(gl)R_
DSP	Ubiquitylation	K154	0.266	-0.098	_ALYK(gl)AISVPR_
DSP	Phosphorylation	S176		0.188	_GGGGYTCQS(ph)GSGWDEFTK_
DSP	Ubiquitylation	K239	-0.069		_WQLDKIK(gl)_
DSP	Ubiquitylation	K322		1.259	_MSQLEVK(gl)EK_
DSP	Ubiquitylation	K324		1.259	_MSQLEVK(gl)EK_
DSP	Ubiquitylation	K1028		1.475	_SLEDLK(gl)LK_
DSP	Ubiquitylation	K1802	0.287	1.314	_IQESK(gl)NQCTQVVQER_
DSP	Phosphorylation	S2209	0.704	1.055	_SMS(ph)FQGIR_
DSP	Phosphorylation	S2606	-0.052	-0.018	_S(ph)SSFSDTLEESSPIAAIFDTENLEK_
DSP	Phosphorylation	S2608	0.063	0.167	_SSS(ph)FSDTLEESSPIAAIFDTENLEK_
DSP	Phosphorylation	S2632		1.154	_SSSFSDTLEESS(ph)PIAAIFDTENLEKIS(ph)ITEGIERGIVDSITGQR_
DSP	Ubiquitylation	K2811	-0.793		_LLEAASVSSK(gl)GLPSPYNMSSAPGSR_
DSP	Phosphorylation	S2815	-1.038	-0.597	_GLPS(ph)PYNMSSAPGSR_
DSP	Phosphorylation	S2820	-0.905	-0.967	_GLPSPYNMS(ph)SAPGSR_
DSP	Phosphorylation	S2821	-0.690	-0.873	_GLPSPYNMSS(ph)APGSR_
DSP	Phosphorylation	S2825	-1.381	-0.714	_GLPSPYNM(ox)SSAPGS(ph)R_
ERBB2	Ubiquitylation	K200		-2.073	_ACHPCSPMCK(gl)GSR_
ERBB2	Ubiquitylation	K369		-0.742	_AVTSANIQEFAGCKK(gl)_
ERBB2	Ubiquitylation	K747	-0.505	-0.019	_GIWIPDGENVK(gl)IPVAIK_
ERBB2	Ubiquitylation	K854	-0.859		_NVLVK(gl)SPNHVK_
ERBB2	Phosphorylation	S1054	-0.476	-0.706	_S(ph)GGGDLTLGLEPSEEEAPR_
FNTB	Phosphorylation	S3	-0.680	-0.936	_(ac)AS(ph)PSSFTYYCPPSSSPVWSEPLYSLRPEHAR_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
GSN	Ubiquitylation	K360	-0.879	0.993	_AALK(gl)TASDFITK_
MACF1	Ubiquitylation	K189	-0.349		_AVLLPLQGETAVEK(gl)GNIQR_
MACF1	Phosphorylation	S312	1.509	0.797	_LLDAEDVDVPS(ph)PDEK_
MACF1	Phosphorylation	S1399	-0.230	-0.113	_AFVESQQKS(ph)PGK_
MACF1	Phosphorylation	S3959	1.328	0.973	_RQGS(ph)FSEDVISHK_
MACF1	Phosphorylation	S3961		0.813	_RQGS(ph)FSEDVISHK_
MACF1	Phosphorylation	S4527	0.479		_SMDAM(ox)S(ph)SPTKTETVK_
MACF1	Phosphorylation	S4528	0.586	-0.026	_SMDAMSS(ph)PTKTETVK_
MACF1	Phosphorylation	S4553	0.011	-0.229	_AFLAELEQNS(ph)PK_
MACF1	Phosphorylation	T5728	0.246	0.783	_EVEEELAT(ph)SGGQSPTGEQIPQFQQR_
MACF1	Phosphorylation	S5733		1.034	_EVEEELATSGGQS(ph)PTGEQIPQFQQR_
MACF1	Phosphorylation	S7105	-1.286	-1.582	_S(ph)LSQPTPPPMPILSQSEAK_
MAP3K1	Phosphorylation	S292		0.209	_RAPS(ph)PDGFSPYSPEETNR_
MAP3K1	Phosphorylation	S506	1.427		_SHDFYSHELS(ph)SPVDSPSSLR_
MAP3K1	Phosphorylation	S507		1.436	_SHDFYSHELSS(ph)PVDSPSSLR_
MAP3K1	Phosphorylation	S923	0.127	-0.120	_LSAS(ph)SEDISER_
MIA3	Phosphorylation	S727	-0.131	-0.291	_VEEDDYPS(ph)EELLEDENAINAK_
MIA3	Ubiquitylation	K1477	-0.359		_LLQLK(gl)LR_
MIA3	Ubiquitylation	K1485	-0.562		_ASVSTK(gl)CNLEDQVK_
MIA3	Ubiquitylation	K1537	-0.142		_EMALQKK(gl)_
MIA3	Ubiquitylation	K1723	-0.975		_WSAEASGK(gl)PSPSDPGSGTATMMNSSSR_
MIA3	Phosphorylation	S1906	-0.790	-0.967	_DLLPSGSRDEPPPASQSTSQDCSQALKQS(ph)P_
MSX2	Phosphorylation	S3	-1.986	-1.774	_(ac)AS(ph)PSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S5	-1.986		_AS(ph)PS(ph)KGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S63		3.351	_EAS(ph)PLPAESASAGATLRPLLLSGHGAR_
MSX2	Phosphorylation	S91	-0.783	-0.727	_EAHS(ph)PGPLVKPFETASVK_
MSX2	Phosphorylation	S123		-0.062	_SENSEDGAAWMQEPGRYS(ph)PPPR_
NF1	Ubiquitylation	K471		0.218	_MAPSLTFKEK(gl)_
NF1	Phosphorylation	S864		-0.458	_SNSGLATYS(ph)PPMGPVSER_
NF1	Phosphorylation	T2514		0.076	_GSEGYLAATYPTVGQT(ph)SPR_
NF1	Phosphorylation	S2515	0.071	0.316	_GSEGYLAATYPTVGQTS(ph)PR_
NF1	Phosphorylation	S2543	0.698	0.655	_S(ph)FDHLISDTK_
PAK1	Phosphorylation	S174	-1.439	-0.597	_AVSETPAVPPVS(ph)EDEDDDDDDATPPPVIAPRPEHTK_
PAK1	Phosphorylation	T212		0.312	_SVIEPLPVT(ph)PTR_
PAK1	Phosphorylation	T219	-0.560	-0.962	_DVAT(ph)SPISPTENNTT(ph)PPDALTR_
PAK1	Phosphorylation	S220	-0.916	-0.774	_DVATS(ph)PISPTENNTTPPDALTR_
PAK1	Phosphorylation	S223	1.033	0.153	_DVATSPIS(ph)PTENNTTPPDALTR_
PAK1	Phosphorylation	T225	-1.278		_DVATSPISPT(ph)ENNTTPPDALTR_
PAK1	Phosphorylation	T230	-1.418	-1.502	_DVATSPISPTENNTT(ph)PPDALTR_
POU2F3	Phosphorylation	S408	0.932	1.562	_RTS(ph)IETNIR_
PTK7	Ubiquitylation	K843	0.757	0.315	_SLQSK(gl)DEQQQLDFRR_
PTK7	Ubiquitylation	K906	0.519	-0.411	_LK(gl)SQPLSTK_
RAF1	Phosphorylation	S29	0.028	-0.571	_DAVFDGSSCIS(ph)PTIVQQFGYQR_
RAF1	Phosphorylation	T31	0.028	-0.669	_DAVFDGSSCIS(ph)PTIVQQFGYQR_
RAF1	Phosphorylation	S244		0.053	_YSTPHAFTFNTSS(ph)PSSEGSLSQR_
RAF1	Phosphorylation	S259	-0.069	0.054	_STS(ph)TPNVHM(ox)VSTTLPVDSR_
RAF1	Phosphorylation	S301		-0.651	_SHSESASPSALSSSPNNLS(ph)PTGWSQPK_
RAF1	Phosphorylation	T303		-0.664	_SHSESASPSALSSSPNNLSPT(ph)GWSQPK_
RAF1	Phosphorylation	S497		-0.449	_SRWS(ph)GSQQVEQPTGSVLWMAPEVIR_
RAF1	Phosphorylation	S621	0.212	0.271	_SAS(ph)EPSLHR_
RAF1	Phosphorylation	S642	-0.197	0.463	_AAHTEDINACTLTTS(ph)PR_
SCARB1	Ubiquitylation	K480	0.325	0.520	_GSVLQEAK(gl)L_
SDC2	Ubiquitylation	K193	-0.696	-0.929	_KPSSAAYQK(gl)APTK_
SDC2	Ubiquitylation	K197	-0.160	0.647	_APTK(gl)EFYA_
SMAD3	Ubiquitylation	K13	-0.704		_(ac)SSILPFTPPIVK(gl)R_
TGFB1	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TGFB3	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TGFBR1	Ubiquitylation	K449	-0.991		_VVCEQK(gl)LRPNIPNR_
TGFBR1	Ubiquitylation	K502	0.553	0.430	_TLSQLSQQEGIK(gl)M_
TIMP1	Ubiquitylation	K70	1.253	-0.548	_MYK(gl)GFQALGDAADIR_
TPM1	Ubiquitylation	K30	-1.537		_AEQAEADKK(gl)AAEDR_
VANGL2	Ubiquitylation	K379	0.582		_LQEEEQK(gl)NPR_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_