RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CLTA	2	-0.050	0.210
CLTA	2	-0.050	0.210		-1.163	-0.046
ARRB2	1	2.000	-1.160	-0.340	0.096	0.051		-1.604
MYO6	1	-1.580	2.560	0.037			0.700	0.607
MYO6	1	-1.580	2.560		-0.533
AP4M1	1	1.440	-1.120
AP2B1	0	0.890	-0.970
AP2B1	0	0.890	-0.970	-0.267	0.203	0.287	0.311	0.233
EPN3	0	-0.820	0.920	0.286			0.676	0.159
EPN1	0	0.000	-0.210	0.286			0.676	0.159
SNAP91	0						0.221	0.666
CLTCL1	0	-1.030	1.030
CLTCL1	0	-1.030	1.030	-0.538	-0.243	-0.478	0.375	0.284
TFRC	0	-0.840	0.870				-1.270	-0.277
TFRC	0	-0.840	0.870	0.348			-1.075	-0.602
PICALM	0	0.890	-0.980				0.221	0.666
PICALM	0	0.890	-0.980
EPS15	0	0.580	-0.640
EPS15	0	0.580	-0.640
DNM1L	0	0.850	0.090	0.362
RAB35	0	-0.410	0.700				0.588	0.619
AAK1	0	1.900	-1.150
AAK1	0	1.900	-1.150				0.289	-0.421
OCRL	0	0.410	-0.320	0.052			0.039	0.310
OCRL	0	0.410	-0.320
LRP1	0	-0.360	0.400				1.199	1.016
EPS15L1	0	0.060	-0.480				-0.187	0.065
SH3BP4	0	-0.080	0.600
LDLR	0	0.610	-0.680					-0.328
HIP1R	0	-0.280	1.350					0.541
SORT1	0
REPS1	0	-0.680	1.120	0.365				0.080
ARRB1	0	0.960	-0.620
APP	0	0.100	-0.260					0.285
HSPD1	0	1.020	-0.650	1.151	0.719	-0.757
DAB2	0	0.510	-0.470
FCHO2	0	0.030	-0.430
NECAP2	0	1.070	-0.260
AP2M1	0	-1.250	2.200	-0.363	0.794	-0.187	0.544	0.370
AP2M1	0	-1.250	2.200
AP1S2	0	1.190	-0.690	-1.049
FNBP1	0	0.860	-0.550
ITSN1	0	-0.670	0.610
ITSN1	0	-0.670	0.610				0.287	0.672

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AAK1	Phosphorylation	T605		-0.689	_VQT(ph)TPPPAVQGQK_
AAK1	Phosphorylation	T606	-0.648	-1.206	_VQTT(ph)PPPAVQGQK_
AAK1	Phosphorylation	T620	-0.540	-0.524	_VGSLT(ph)PPSS(ph)PK_
AAK1	Phosphorylation	S623	-0.540	-0.550	_VGSLT(ph)PPS(ph)SPK_
AAK1	Phosphorylation	S624	-0.737	-0.516	_VGSLT(ph)PPSS(ph)PK_
AAK1	Phosphorylation	S652	0.769	1.397	_S(ph)TQLLQAAAAEASLNK_
AAK1	Phosphorylation	T653	0.769	1.397	_S(ph)TQLLQAAAAEASLNK_
AAK1	Phosphorylation	S947	-0.044	0.120	_S(ph)ESNEDLFGLVPFDEITGSQQQK_
AAK1	Phosphorylation	S949	0.168	-0.189	_SES(ph)NEDLFGLVPFDEITGSQQQK_
AAK1	Phosphorylation	T1014	-0.576	0.108	_TLKPTYRT(ph)PER_
AP2B1	Ubiquitylation	K5	0.145	0.310	_(ac)TDSK(gl)YFTTNK_
AP2B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP2B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP2B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP2B1	Ubiquitylation	K733		-0.273	_AVWLPAVK(gl)AK_
AP2B1	Ubiquitylation	K735	-0.839	-0.273	_AVWLPAVKAK(gl)_
AP2M1	Ubiquitylation	K249	0.386	0.460	_IVIEK(gl)QGK_
AP2M1	Ubiquitylation	K263	-0.058	-0.236	_SGK(gl)QSIAIDDCTFHQCVR_
AP2M1	Ubiquitylation	K281	-0.401	0.214	_LSK(gl)FDSER_
AP2M1	Ubiquitylation	K306	-2.014	-0.836	_TTK(gl)DIILPFR_
AP2M1	Ubiquitylation	K337	-1.115		_SNFK(gl)PSLLAQK_
AP2M1	Ubiquitylation	K364	-1.253		_IPTPLNTSGVQVICMK(gl)GK_
AP4M1	Phosphorylation	S128	1.632		_LS(ph)VLIASNGSLLK_
AP4M1	Phosphorylation	S133		1.202	_LSVLIAS(ph)NGSLLK_
APP	Ubiquitylation	K751	-1.778	-1.280	_HLSK(gl)M(ox)QQNGYENPTYK_
ARRB1	Phosphorylation	S412	0.138	0.253	_GMKDDKEEEEDGTGS(ph)PQLNNR_
ARRB2	Ubiquitylation	K199	-1.933		_VQFAPEK(gl)PGPQPSAETTR_
CLTA	Phosphorylation	S105	1.262	1.599	_LQS(ph)EPESIRK_
CLTA	Ubiquitylation	K223	-0.282	0.457	_LCDFNPK(gl)SSK_
CLTA	Ubiquitylation	K226	-0.199	1.848	_LCDFNPKSSK(gl)_
CLTA	Ubiquitylation	K242	0.149		_SVLISLK(gl)QAPLVH_
CLTCL1	Ubiquitylation	K83	0.714		_VIALK(gl)AGK_
CLTCL1	Ubiquitylation	K86		0.631	_VIALKAGK(gl)_
CLTCL1	Ubiquitylation	K389	-1.051	-0.085	_VAANAPK(gl)GILR_
CLTCL1	Phosphorylation	T394	-0.123	0.181	_GILRT(ph)PDTIRR_
CLTCL1	Ubiquitylation	K506		0.267	_IVLYAK(gl)K_
CLTCL1	Ubiquitylation	K507	0.050	0.267	_IVLYAKK(gl)_
CLTCL1	Ubiquitylation	K619	-0.177	0.475	_AHIAQLCEK(gl)AGLLQR_
CLTCL1	Ubiquitylation	K737	-0.435	-0.298	_YIQAACK(gl)TGQIK_
CLTCL1	Ubiquitylation	K742	0.005	0.082	_TGQIK(gl)EVER_
CLTCL1	Ubiquitylation	K851		-0.859	_GQFSTDELVAEVEK(gl)R_
CLTCL1	Ubiquitylation	K911	-1.282		_YCEK(gl)RDPHLACVAYER_
CLTCL1	Ubiquitylation	K941		-1.252	_VCNENSLFK(gl)SEAR_
CLTCL1	Ubiquitylation	K1118	-0.674	-0.765	_AQLQK(gl)GMVK_
CLTCL1	Ubiquitylation	K1209		-0.791	_CYDEK(gl)MYDAAK_
CLTCL1	Ubiquitylation	K1443	-2.089	-0.019	_VK(gl)QLPLVKPYLR_
CLTCL1	Ubiquitylation	K1449		-1.977	_AGQLPLVK(gl)PYLR_
CLTCL1	Ubiquitylation	K1449		-2.307	_QLPLVK(gl)PYLR_
CLTCL1	Ubiquitylation	K1516		-0.990	_IAAYLFK(gl)GNNR_
CLTCL1	Ubiquitylation	K1609	-0.714		_EYLTK(gl)VDKLDASESLR_
DAB2	Phosphorylation	S401	-0.704	-0.722	_SSPNPFVGS(ph)PPK_
DNM1L	Ubiquitylation	K226	-0.801		_VPVGDQPK(gl)DIELQIR_
DNM1L	Ubiquitylation	K371		-0.203	_DCLPELK(gl)TR_
DNM1L	Phosphorylation	S610		0.467	_VPSALAPAS(ph)QEPSPAASAEADGK_
DNM1L	Phosphorylation	S614		-1.241	_VPSALAPASQEPS(ph)PAASAEADGK_
DNM1L	Phosphorylation	S671	-1.151	-1.028	_SKPIPIM(ox)PAS(ph)PQK_
EPN1	Ubiquitylation	K97	-0.214	0.731	_VSQQCK(gl)ENMYAVQTLK_
EPN1	Ubiquitylation	K107	-0.288	1.227	_ENMYAVQTLK(gl)DFQYVDR_
EPN1	Ubiquitylation	K117	0.237		_DFQYVDRDGK(gl)DQGVNVR_
EPN1	Ubiquitylation	K128	0.126		_AK(gl)QLVALLRDEDR_
EPN1	Phosphorylation	S417	0.164		_TALPTS(ph)GSSAGELELLAGEVPAR_
EPN1	Phosphorylation	S420	-0.776	-0.436	_TALPTSGSS(ph)AGELELLAGEVPAR_
EPN1	Phosphorylation	S435	0.801	0.890	_S(ph)PGAFDMSGVR_
EPN1	Phosphorylation	T470	-1.386	-1.782	_T(ph)PESFLGPNAALVDLDSLVSRPGPTPPGAK_
EPN1	Phosphorylation	S473	-0.700	-0.430	_KTPES(ph)FLGPNAALVDLDSLVSR_
EPN3	Ubiquitylation	K97	-0.214	0.731	_VSQQCK(gl)ENMYAVQTLK_
EPN3	Ubiquitylation	K107	-0.288	1.227	_ENMYAVQTLK(gl)DFQYVDR_
EPN3	Ubiquitylation	K117	0.237		_DFQYVDRDGK(gl)DQGVNVR_
EPN3	Ubiquitylation	K128	0.126		_AK(gl)QLVALLRDEDR_
EPN3	Phosphorylation	S417	0.164		_TALPTS(ph)GSSAGELELLAGEVPAR_
EPN3	Phosphorylation	S420	-0.776	-0.436	_TALPTSGSS(ph)AGELELLAGEVPAR_
EPN3	Phosphorylation	S435	0.801	0.890	_S(ph)PGAFDMSGVR_
EPN3	Phosphorylation	T470	-1.386	-1.782	_T(ph)PESFLGPNAALVDLDSLVSRPGPTPPGAK_
EPN3	Phosphorylation	S473	-0.700	-0.430	_KTPES(ph)FLGPNAALVDLDSLVSR_
EPS15	Phosphorylation	S108	-1.380	-0.251	_FHDTSS(ph)PLLISGTSAAELPWAVKPEDK_
EPS15	Phosphorylation	S324	1.499	1.080	_NIIGSS(ph)PVADFSAIK_
EPS15	Phosphorylation	S428	-0.224	-0.557	_S(ph)SPELLPSGVTDENEVTTAVTEK_
EPS15	Phosphorylation	S429	-0.224	-0.308	_S(ph)SPELLPSGVTDENEVTTAVTEK_
EPS15	Ubiquitylation	K620	0.143	0.541	_SATSSSVSNVVITK(gl)NVFEETSVK_
EPS15	Ubiquitylation	K654	-2.207	-1.253	_IGTPTRPCPLPPGK(gl)R_
EPS15	Phosphorylation	S662	1.046	0.458	_SINKLDS(ph)PDPFK_
EPS15	Phosphorylation	S814	-0.764	-0.870	_LNDPFQPFPGNDS(ph)PKEKDPEIFCDPFTSATTTTNK_
EPS15L1	Phosphorylation	S107	-0.485	-0.667	_FHDTS(ph)SPLM(ox)VTPPSAEAHWAVR_
EPS15L1	Phosphorylation	S229	-1.124	-1.213	_KTVFPGAVPVLPAS(ph)PPPKDSLR_
EPS15L1	Phosphorylation	S255	0.126	0.287	_STPSHGSVSSLNSTGSLS(ph)PK_
EPS15L1	Ubiquitylation	K400	0.435		_EK(gl)YSLEQDIR_
EPS15L1	Ubiquitylation	K492	-0.067	0.278	_TQIQSQESDLK(gl)SQEDDLNR_
EPS15L1	Ubiquitylation	K531	0.195	0.973	_VQLETIIK(gl)SLK_
EPS15L1	Ubiquitylation	K534	-0.080	0.668	_SLK(gl)STQDEINQAR_
EPS15L1	Ubiquitylation	K546	-0.181	0.567	_SK(gl)LSQLHESR_
EPS15L1	Phosphorylation	S575		0.556	_SLEQYDQVLDGAHGAS(ph)LTDLANLSEGVSLAER_
EPS15L1	Phosphorylation	T577		0.556	_SLEQYDQVLDGAHGAS(ph)LTDLANLSEGVSLAER_
EPS15L1	Ubiquitylation	K604	-0.465	0.502	_GSFGAMDDPFKNK(gl)_
EPS15L1	Phosphorylation	T612		0.698	_ALLFSNNT(ph)QELHPDPFQTEDPFK_
EPS15L1	Ubiquitylation	K679	0.297	0.644	_GSATDDFFK(gl)K_
EPS15L1	Ubiquitylation	K683	-0.669	-0.149	_QTK(gl)NDPFTSDPFTK_
EPS15L1	Ubiquitylation	K694	-2.706	-1.303	_NDPFTSDPFTK(gl)NPSLPSK_
EPS15L1	Ubiquitylation	K701	-2.391		_NPSLPSK(gl)LDPFESSDPFSSSSVSSK_
EPS15L1	Phosphorylation	S804	-1.633		_STPVSQLGS(ph)ADFPEAPDPFQPLGADSGDPFQSK_
FCHO2	Ubiquitylation	K103	1.207		_EVQK(gl)YGEEQVK_
FCHO2	Ubiquitylation	K165	-1.342		_EIEK(gl)AAVK_
FCHO2	Phosphorylation	S387	0.700	-0.080	_VSIGNITLS(ph)PAISR_
FCHO2	Phosphorylation	S394	-0.115	0.075	_HS(ph)PVQMNR_
FCHO2	Phosphorylation	S403	0.527	0.628	_NLS(ph)NEELTK_
FCHO2	Phosphorylation	S478	-1.450	-2.102	_LS(ph)GINEIPRPFS(ph)PPVTSNTSPPPAAPLAR_
FCHO2	Phosphorylation	S488	-1.543	-1.955	_LSGINEIPRPFS(ph)PPVTSNT(ph)SPPPAAPLAR_
FCHO2	Phosphorylation	T492	-1.785		_LTSGKLSGINEIPRPFSPPVT(ph)S(ph)NTSPPPAAPLAR_
FCHO2	Phosphorylation	S511		0.470	_AESSSS(ph)ISSSASLSAANTPTVGVSR_
FCHO2	Ubiquitylation	K744	0.921	0.005	_LSSISEK(gl)SENGGSGSLR_
FNBP1	Phosphorylation	S296	0.887	1.145	_TVS(ph)DNSLSNSR_
HIP1R	Ubiquitylation	K5	-0.561	-0.282	_(ac)MNSIK(gl)NVPAR_
HSPD1	Phosphorylation	S70	0.210	0.487	_TVIIEQSWGS(ph)PK_
HSPD1	Ubiquitylation	K82	-0.300		_DGVTVAK(gl)SIDLK_
HSPD1	Ubiquitylation	K87	-0.005	0.292	_SIDLK(gl)DKYK_
HSPD1	Ubiquitylation	K130		-0.428	_EGFEK(gl)ISK_
HSPD1	Ubiquitylation	K233	0.853	0.024	_GYISPYFINTSK(gl)GQK_
HSPD1	Ubiquitylation	K292	0.339		_LK(gl)VGLQVVAVK_
ITSN1	Phosphorylation	S203	-0.497	-0.811	_AQS(ph)FDVASVPPVAEWAVPQSSR_
ITSN1	Phosphorylation	S313	0.882	0.188	_S(ph)GSGISVISSTSVDQR_
ITSN1	Phosphorylation	S315	0.675	0.750	_SGS(ph)GISVISSTSVDQR_
ITSN1	Ubiquitylation	K569		0.570	_DSLVTLK(gl)R_
ITSN1	Ubiquitylation	K583		0.151	_NMQFSNTPDSGVSLLHK(gl)K_
ITSN1	Ubiquitylation	K584		-0.412	_NMQFSNTPDSGVSLLHKK(gl)_
ITSN1	Ubiquitylation	K596	1.277		_LK(gl)EQLDALEK_
ITSN1	Phosphorylation	S889	-0.357	-0.319	_TVSPGSVS(ph)PIHGQGQVVENLK_
ITSN1	Phosphorylation	S904	-0.681	-0.729	_SAFTPATATGSSPS(ph)PVLGQGEK_
ITSN1	Phosphorylation	S978	1.075	0.684	_STS(ph)MDSGSSESPASLK_
LRP1	Ubiquitylation	K4527	-0.315		_HSLASTDEK(gl)R_
MYO6	Phosphorylation	S266		0.008	_LHLS(ph)SPDNFR_
MYO6	Phosphorylation	S267	-0.106	0.501	_LHLSS(ph)PDNFR_
MYO6	Ubiquitylation	K285	0.079		_YFANK(gl)ETDKQILQNR_
MYO6	Ubiquitylation	K408	0.078		_GTVIK(gl)VPLKVEQANNAR_
MYO6	Ubiquitylation	K634	0.366		_ELFESSTNNNKDTKQK(gl)_
MYO6	Ubiquitylation	K993	-0.079	1.133	_QK(gl)EEESQQQAVLEQERR_
MYO6	Ubiquitylation	K1053		-1.790	_NDGTRPK(gl)MTPEQMAK_
MYO6	Ubiquitylation	K1077	-0.135	0.805	_GPAVLATK(gl)AAAGTK_
MYO6	Ubiquitylation	K1089	0.440	1.326	_YDLSK(gl)WK_
MYO6	Ubiquitylation	K1120	0.732	0.435	_LK(gl)VYHAWK_
MYO6	Ubiquitylation	K1126	0.296		_VYHAWK(gl)SK_
MYO6	Ubiquitylation	K1142	-1.182	-0.570	_NTETEQRAPK(gl)SVTDYAQQNPAAQIPAR_
MYO6	Ubiquitylation	K1184	-1.200	-0.624	_IPFIRPADQYK(gl)DPQSK_
NECAP2	Ubiquitylation	K58		0.359	_GQMAYIK(gl)LEDR_
OCRL	Ubiquitylation	K127		-0.129	_AQSQLLVPEQK(gl)DSSSWYQK_
OCRL	Ubiquitylation	K135	-0.111		_DSSSWYQK(gl)LDTK_
OCRL	Ubiquitylation	K391	1.116	0.789	_RNQDYK(gl)DICAR_
PICALM	Ubiquitylation	K210	-0.364	0.811	_YLNEK(gl)AVSYR_
PICALM	Phosphorylation	T294		-0.800	_KPHTSLT(ph)TAASPVSTSAGGIM(ox)TAPAIDIFSTPSSSNSTSK_
RAB35	Ubiquitylation	K178	1.400	0.800	_DNLAK(gl)QQQQQQNDVVK_
RAB35	Ubiquitylation	K189	0.712	0.634	_QQQQQQNDVVK(gl)LTK_
REPS1	Ubiquitylation	K105		-0.474	_FVASK(gl)NEQESR_
REPS1	Phosphorylation	S143		0.112	_KGS(ph)VSHDTVQPR_
REPS1	Phosphorylation	S392	-0.669	-0.684	_LIDLEDSADVGDQPGEVGYSGS(ph)PAEAPPSK_
REPS1	Phosphorylation	T481	-0.533	-0.095	_TGSDHTNPT(ph)SPLLVKPSDLLEENK_
REPS1	Phosphorylation	S482	-0.386	-0.314	_TGSDHTNPTS(ph)PLLVKPSDLLEENK_
REPS1	Phosphorylation	S562	1.011	0.609	_SSS(ph)LDMNR_
REPS1	Ubiquitylation	K708	0.167	0.890	_LK(gl)SEDELR_
REPS1	Phosphorylation	S709	0.308	0.403	_LKS(ph)EDELRPEVDEHTQK_
SH3BP4	Phosphorylation	S131		-0.309	_NSTLSDSGMIDNLPDS(ph)PDEVAK_
SH3BP4	Phosphorylation	S246	0.304	0.661	_SYS(ph)LSELSVLQAK_
SNAP91	Ubiquitylation	K210	-0.364	0.811	_YLNEK(gl)AVSYR_
SORT1	Ubiquitylation	K294		-0.104	_TSDLGK(gl)SFK_
SORT1	Ubiquitylation	K388	-2.073	-0.343	_GIVYSK(gl)SLDR_
TFRC	Ubiquitylation	K53	-1.280	0.042	_LAVDEEENADNNTK(gl)ANVTKPK_
TFRC	Ubiquitylation	K371		1.291	_MVTSESK(gl)NVK_
TFRC	Ubiquitylation	K374		1.291	_MVTSESK(gl)NVK_