RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SMC3	3	-0.960	1.470
SMC3	3	-0.960	1.470		0.213	0.283
SMC3	3	-0.960	1.470	2.266			0.833	0.442
RIF1	2	1.420	-1.180	-2.063	0.240	0.005	0.360	0.288
NIPBL	2	-0.180	-0.270
NIPBL	2	-0.180	-0.270		1.066	1.181
NIPBL	2	-0.180	-0.270	0.759			0.809	0.590
CTR9	2	-0.230	0.260	1.648			-0.448	0.795
CTR9	2	-0.230	0.260		0.905	1.607
PAF1	1	0.390	-0.320	1.232	0.546	1.561	-0.837	0.458
MED24	1	-1.120	1.330	-0.351	-0.190	0.792		-0.333
MED17	1	0.700	-0.990	-1.647		1.651	-0.170	-0.346
DICER1	1	-0.810	0.800	1.748			-0.207	-0.634
NKAP	1	1.470	-1.040	-0.400			-0.272	-0.498
CDC73	1	1.000	-0.660	1.109	0.620	1.610	-0.862	0.436
RTF1	1	0.010	0.230		0.513	1.879	0.176	0.306
FZD7	1	2.260	-1.160
MED30	1	2.100	-1.330
LEO1	1	-0.730	0.200	1.072	0.738	1.390	1.163	0.646
MED14	1	-0.700	0.420	-2.483	0.951	1.842	-1.302	-0.509
SALL4	0	0.590	0.130	-0.080	0.063	0.213	0.247	0.009
STAG2	0	0.690	-0.320				1.092	0.608
STAG2	0	0.690	-0.320
STAG2	0	0.690	-0.320	0.933	0.143	0.415
BMPR1A	0	0.020	-0.130
ESRRB	0	-0.140	-0.120				0.047	0.181
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
LIN28A	0	0.700	-0.230
TPT1	0	0.360	-0.510				-0.570	-0.005
MED10	0
MED6	0	0.150	-0.220	-2.260
ZCCHC11	0	0.240	-0.330	1.006
TBX3	0	-0.160	0.160
TET1	0	0.570	0.030
MTF2	0						1.093	0.072
MED27	0	-0.870	1.300	-3.189
STAT3	0	0.200	-1.270					0.334
SOX2	0	-0.250	0.870
MED12	0	-0.180	-0.500				-1.501	-0.491
ZNF358	0	-0.260	1.180

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BMPR1A	Ubiquitylation	K232	-0.391	0.172	_TIAK(gl)QIQMVR_
BMPR1A	Ubiquitylation	K477	0.265	-0.134	_EVVCVK(gl)R_
CDC73	Ubiquitylation	K136	0.034		_AADEVLAEAK(gl)KPR_
CDC73	Ubiquitylation	K161	1.275		_LEGHK(gl)EGIVQTEQIR_
CDC73	Ubiquitylation	K198	0.681		_STIK(gl)TDLDDDITALK_
CDC73	Ubiquitylation	K209	-0.003	-1.671	_TDLDDDITALK(gl)QR_
CDC73	Ubiquitylation	K243	0.937		_TTILQSTGK(gl)NFSK_
CDC73	Ubiquitylation	K247	0.739		_TTILQSTGKNFSK(gl)_
CDC73	Ubiquitylation	K283	-0.189		_TK(gl)QPIPAAYNR_
CTR9	Ubiquitylation	K770	-0.112		_LATSVLK(gl)DEK_
CTR9	Ubiquitylation	K844	0.845		_AK(gl)QEQEKELLR_
CTR9	Phosphorylation	T925	0.431	0.460	_KGGEFDEFVNDDT(ph)DDDLPISK_
CTR9	Phosphorylation	S970	-0.260	0.024	_GEEGS(ph)DDDETENGPKPK_
FZD7	Ubiquitylation	K569	0.551	0.319	_LSHSSK(gl)GETAV_
LEO1	Phosphorylation	S10		0.712	_(ac)ADMEDLFGS(ph)DADSEAER_
LEO1	Phosphorylation	S14		1.186	_(ac)ADMEDLFGSDADS(ph)EAER_
LEO1	Ubiquitylation	K415	1.075		_LK(gl)VENTIR_
LEO1	Ubiquitylation	K486	1.353		_QGTGLQGQAVFK(gl)TK_
LEO1	Ubiquitylation	K503	1.640		_K(gl)MTLSLADR_
LEO1	Ubiquitylation	K537	0.452		_TEMIK(gl)KEEER_
LEO1	Phosphorylation	T629		0.613	_KLT(ph)SDEEGEPSGK_
LEO1	Phosphorylation	S630	0.373	0.499	_LTS(ph)DEEGEPSGK_
LEO1	Phosphorylation	S658	0.549	0.449	_YVIS(ph)DEEEEDDD_
LIN28A	Ubiquitylation	K102		-0.047	_SAK(gl)GLESIR_
MED10	Ubiquitylation	K4	-1.822	-1.288	_(ac)AEK(gl)FDHLEEHLEK_
MED10	Ubiquitylation	K53	-0.830	0.455	_LNFIVTGLQDIDK(gl)CR_
MED10	Ubiquitylation	K82	-1.856	-0.301	_NPQLYTK(gl)ECLER_
MED10	Ubiquitylation	K91		0.241	_ALAK(gl)NEQVK_
MED10	Ubiquitylation	K98	-1.357		_GK(gl)IDTMKK_
MED10	Ubiquitylation	K104	-0.971		_GKIDTMKK(gl)_
MED10	Ubiquitylation	K106		0.002	_FK(gl)SLLIQELSK_
MED12	Ubiquitylation	K429		-0.439	_EIEQQIK(gl)ER_
MED12	Ubiquitylation	K531		-0.272	_AMVVAKLLEK(gl)_
MED12	Phosphorylation	S635	-1.278	-0.801	_GDLAFGAPGPRPPS(ph)PFDDPADDPEHK_
MED12	Ubiquitylation	K1001		-1.092	_VK(gl)NTIYCNVEPSESNMR_
MED12	Ubiquitylation	K1661		-1.781	_DVITCEPQGSLIDTK(gl)GNK_
MED12	Ubiquitylation	K1682		-0.745	_EGLQVSTK(gl)QK_
MED12	Ubiquitylation	K1684		-0.960	_EGLQVSTK(gl)QK_
MED14	Ubiquitylation	K176		-0.354	_DK(gl)IIPPDPITK_
MED14	Ubiquitylation	K487		0.044	_SVNDDMK(gl)R_
MED14	Ubiquitylation	K699		-0.410	_GITEETQK(gl)ALDR_
MED14	Phosphorylation	S986	-1.229	-1.699	_SVNEDDNPPS(ph)PIGGDM(ox)MDSLISQLQPPPQQQPFPK_
MED14	Ubiquitylation	K1256		-1.340	_VALSPK(gl)TNQTLQLK_
MED24	Phosphorylation	S862	1.164	0.238	_LLS(ph)SNEDDANILSS(ph)PTDR_
MED24	Phosphorylation	S863	2.413		_LLSS(ph)NEDDANILSS(ph)PTDR_
MED24	Phosphorylation	S873	0.174	0.861	_LLSSNEDDANILSS(ph)PTDR_
MED27	Ubiquitylation	K145		-0.804	_SANQMGVSAK(gl)R_
MED27	Ubiquitylation	K275	1.039	0.452	_SYIK(gl)LFQAPCQR_
MED30	Phosphorylation	S2	-0.188	-0.097	_(ac)S(ph)TPPLAASGMAPGPFAGPQAQQAAR_
MED30	Phosphorylation	T3	-0.188	-0.624	_(ac)ST(ph)PPLAASGMAPGPFAGPQAQQAAR_
MED6	Ubiquitylation	K51		-0.146	_TCNNEVVK(gl)MQR_
NIPBL	Phosphorylation	S178	0.767	1.039	_NNTAAETEDDES(ph)DGEDRGGGTSGVR_
NIPBL	Phosphorylation	S280	0.496	0.816	_SPQPVCS(ph)PAGSEGTPK_
NIPBL	Phosphorylation	S284	0.172	0.245	_SPQPVCSPAGS(ph)EGTPK_
NIPBL	Phosphorylation	S305	0.703		_GSRPPLILQSQSLPCS(ph)SPR_
NIPBL	Phosphorylation	S306	0.689	0.413	_GSRPPLILQSQSLPCSS(ph)PR_
NIPBL	Phosphorylation	S318	-0.415	-0.625	_DVPPDILLDS(ph)PERK_
NIPBL	Phosphorylation	S349	0.713	0.649	_AAMYDIIS(ph)SPSKDSTK_
NIPBL	Phosphorylation	S350	0.226	0.375	_AAMYDIISS(ph)PSK_
NIPBL	Phosphorylation	S553	2.102	1.878	_VDS(ph)QASITQDSDSIK_
NIPBL	Phosphorylation	T599	0.308		_STPENHPET(ph)PKKK_
NIPBL	Phosphorylation	T713	-0.940	-0.779	_GESRPET(ph)PKQK_
NIPBL	Ubiquitylation	K1628	0.366		_DAVTSK(gl)MDQGSIER_
NIPBL	Phosphorylation	S2658	0.412	0.260	_AITSLLGGGS(ph)PK_
NIPBL	Phosphorylation	S2672	0.868		_NNTAAETEDDES(ph)DGEDRGGGTSGSLR_
NKAP	Phosphorylation	S9		0.004	_APVSGSRS(ph)PDREASGSGGR_
NKAP	Phosphorylation	S64		2.600	_NGLTHQLGGLS(ph)QGSR_
NKAP	Phosphorylation	S149	-0.075	-0.248	_IGELGAPEVWGLS(ph)PK_
NKAP	Ubiquitylation	K379	0.022		_ENQIYSADEK(gl)R_
PAF1	Ubiquitylation	K62	-0.086	-0.282	_FVQYK(gl)ATSLEK_
PAF1	Ubiquitylation	K119		-1.018	_LLEEEIQAPTSSK(gl)R_
PAF1	Ubiquitylation	K133		0.847	_K(gl)TEYISTEFNR_
PAF1	Ubiquitylation	K188		-1.529	_TFEDAQK(gl)SISQHYSKPR_
PAF1	Ubiquitylation	K196	-1.455	-1.126	_SISQHYSK(gl)PR_
PAF1	Ubiquitylation	K300	-1.882	-0.738	_EYNWNVK(gl)NK_
PAF1	Ubiquitylation	K338	0.621	-0.090	_AK(gl)AGVQSGTNALLVVK_
PAF1	Ubiquitylation	K352	-0.333	-0.469	_AGVQSGTNALLVVK(gl)HR_
RIF1	Phosphorylation	S7	0.303	-0.353	_GQS(ph)PLAPLLETLEDPSASHGGQTDAYLTLTSR_
RIF1	Phosphorylation	S402		-1.985	_GASS(ph)PYGAPGTPR_
RIF1	Phosphorylation	T409		-1.985	_GASS(ph)PYGAPGT(ph)PR_
RIF1	Phosphorylation	S782		0.666	_VKS(ph)PQRPSDWSK_
RIF1	Phosphorylation	S1454	0.362	0.645	_S(ph)PLHIKDDVLPK_
RIF1	Phosphorylation	S1542	0.082	0.706	_RAS(ph)QGLLSSIENSESDSSEAKEEGSR_
RIF1	Phosphorylation	S1554		0.475	_RASQGLLSSIENSES(ph)DSSEAKEEGSR_
RIF1	Phosphorylation	S1579	0.402	0.564	_SNES(ph)VDIQDQEEK_
RIF1	Phosphorylation	S1616	1.504	1.400	_ATSEEDVSIKS(ph)PICEK_
RIF1	Phosphorylation	S1688	0.724	0.987	_RDS(ph)FDNCSLGESSK_
RIF1	Ubiquitylation	K1721	0.678		_TFQTLECQHK(gl)R_
RIF1	Phosphorylation	S1873	2.712	1.678	_NVS(ph)QESLETKEEKPEETPK_
RIF1	Phosphorylation	S2144	0.017	-0.130	_VEEPSQCLASGTAISELIIEDNNAS(ph)PQK_
RIF1	Phosphorylation	S2161	-0.390	-0.598	_ELDPSLVSANDS(ph)PSGMQTR_
RIF1	Phosphorylation	S2196	-0.223		_RSQEDEISS(ph)PVNK_
RIF1	Phosphorylation	S2205		-1.368	_RVS(ph)FADPIYQAGLADDIDRR_
RIF1	Phosphorylation	S2348	-0.973	-0.812	_TLPIRS(ph)PK_
RIF1	Phosphorylation	S2393	1.433	1.571	_SLS(ph)PDEER_
RTF1	Phosphorylation	S697	-0.071	0.175	_S(ph)LNLEDYKK_
SALL4	Phosphorylation	S1119	-1.156	-1.235	_DTPTSHVPSGPLSSSATS(ph)PVLLPALPR_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
SMC3	Ubiquitylation	K106	0.087		_K(gl)DQYFLDKK_
SMC3	Ubiquitylation	K140	-0.351	0.443	_SNPYYIVK(gl)QGK_
SMC3	Ubiquitylation	K143	-1.015	0.329	_QGK(gl)INQMATAPDSQR_
SMC3	Ubiquitylation	K172	0.044	0.537	_VYDERK(gl)EESISLMK_
SMC3	Ubiquitylation	K180	0.000		_KEESISLM(ox)K(gl)ETEGKR_
SMC3	Ubiquitylation	K188	0.711		_EK(gl)INELLK_
SMC3	Ubiquitylation	K194	0.447	0.876	_INELLK(gl)YIEER_
SMC3	Ubiquitylation	K459	0.122		_YYEVK(gl)NK_
SMC3	Ubiquitylation	K461	0.122		_YYEVK(gl)NK_
SMC3	Ubiquitylation	K968	1.085		_K(gl)LEQCNTELKK_
SMC3	Ubiquitylation	K977	0.607		_KLEQCNTELK(gl)K_
SMC3	Ubiquitylation	K1025	0.441		_K(gl)YEAIQLTFK_
SMC3	Ubiquitylation	K1034	0.865		_KYEAIQLTFK(gl)QVSK_
SMC3	Ubiquitylation	K1038	0.959		_QVSK(gl)NFSEVFQK_
SMC3	Phosphorylation	S1065	1.113		_GDVEGS(ph)QSQDEGEGSGESER_
SMC3	Phosphorylation	S1067	1.197	1.207	_KGDVEGSQS(ph)QDEGEGSGESER_
SMC3	Phosphorylation	S1081	3.980	3.931	_GS(ph)GSQSSVPSVDQFTGVGIR_
SMC3	Phosphorylation	S1083	4.043	3.766	_GSGS(ph)QSSVPSVDQFTGVGIR_
SMC3	Phosphorylation	S1085		3.316	_GSGSQS(ph)SVPSVDQFTGVGIR_
SMC3	Phosphorylation	S1086		3.710	_GSGSQSS(ph)VPSVDQFTGVGIR_
SMC3	Ubiquitylation	K1105	0.634	1.207	_VSFTGK(gl)QGEMR_
SMC3	Ubiquitylation	K1194	0.816		_NK(gl)VSHIDVITAEMAK_
SOX2	Phosphorylation	S251	0.157	-0.109	_SEASSS(ph)PPVVTSSSHSR_
STAG2	Ubiquitylation	K270	-0.214	0.529	_LELLLQK(gl)R_
STAG2	Ubiquitylation	K449		-0.454	_RDPEEDGMMK(gl)R_
STAG2	Ubiquitylation	K755		0.039	_ITESSSTK(gl)EDLLR_
STAG2	Phosphorylation	S1061	0.668	0.663	_NSLLAGGDDDTMSVIS(ph)GISSR_
STAG2	Phosphorylation	S1064	0.577	0.254	_NSLLAGGDDDTMSVISGIS(ph)SR_
STAG2	Phosphorylation	S1065		0.596	_NSLLAGGDDDTM(ox)SVISGISS(ph)R_
STAG2	Phosphorylation	T1112		0.806	_EQTLHT(ph)PVMMQTPQLTSTIMR_
STAG2	Phosphorylation	T1197	0.563	0.120	_GT(ph)SLMEDDEEPIVEDVMMSSEGR_
STAG2	Phosphorylation	S1198	0.563	0.016	_GTS(ph)LM(ox)EDDEEPIVEDVMMSSEGR_
STAT3	Ubiquitylation	K177	0.957		_VVENLQDDFDFNYK(gl)TLK_
STAT3	Ubiquitylation	K180	1.179		_TLK(gl)SQGDMQDLNGNNQSVTR_
STAT3	Ubiquitylation	K244	0.262		_TLTDEELADWK(gl)R_
STAT3	Phosphorylation	T714		-0.338	_FICVT(ph)PTTCSNTIDLPMS(ph)PR_
STAT3	Phosphorylation	S727	-0.079	0.156	_FICVTPTTCSNTIDLPMS(ph)PR_
TBX3	Ubiquitylation	K466	-2.519		_EGTAPAK(gl)VEEAR_
TET1	Phosphorylation	S871		-0.220	_DGS(ph)PVQPSLLSLM(ox)K_
TPT1	Phosphorylation	T39		-0.158	_T(ph)EGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTK_
TPT1	Phosphorylation	S53		-1.046	_TEGNIDDSLIGGNAS(ph)AEGPEGEGTESTVITGVDIVMNHHLQETSFTK_
TPT1	Ubiquitylation	K102		-0.063	_GK(gl)LEEQRPER_
TPT1	Ubiquitylation	K112	0.114	0.269	_VK(gl)PFMTGAAEQIK_
ZCCHC11	Phosphorylation	S104		0.102	_KFPNS(ph)PVK_
ZCCHC11	Phosphorylation	S155	0.940	0.682	_SEKVPS(ph)SPAEAEKGPSLLLK_
ZCCHC11	Phosphorylation	S156	0.940	0.043	_SEKVPSS(ph)PAEAEKGPSLLLK_
ZCCHC11	Ubiquitylation	K680	-1.370	-0.706	_IAIEDPFSVK(gl)R_
ZNF358	Phosphorylation	S146	-1.729		_VDPISSGLTATPQVLATSPAVLPAPAS(ph)PPRPFSCPDCGR_
ZNF358	Phosphorylation	S152		-0.863	_VDPISSGLTATPQVLATSPAVLPAPASPPRPFS(ph)CPDCGR_