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Query: RTF1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
RTF1 1 3.208 0.010 0.230 0.513 1.879 0.176 0.306

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
RTF1 Phosphorylation S697 -0.071 0.175 _S(ph)LNLEDYKK_

Background Information for RTF1:


Pubmed-RTF1 »
Uniprot-RTF1 »
Biogrid-RTF1 »
ProteomicsDB-RTF1 »

Tumorportal-RTF1 »
COSMIC-RTF1 »
GenomeRNAi-RTF1 »
Genecards-RTF1


Protein-protein Interactions for RTF1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait ARRB1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ARRB2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DENND2D Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PIP4K2A Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in RTF1
Domain name Domain Description TC-NER relevance -log10(p-value)


Protein complexes (CORUM database) featuring RTF1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring RTF1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005730 nucleolus Database 13.38
Category members GO Category GO:0003697 single-stranded DNA binding Database 4.24
Category members GO Category GO:0006352 DNA-dependent transcription, initiation Database 3.76
Category members GO Category GO:0001711 endodermal cell fate commitment Database 2.34
Category members GO Category GO:0016593 Cdc73/Paf1 complex Database 1.75
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0051571 positive regulation of histone H3-K4 methylation Database 0.99
Category members GO Category GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter Database 0.99
Category members GO Category GO:0019827 stem cell maintenance Database 0.48
Category members GO Category GO:0045944 positive regulation of transcription from RNA polymerase II promoter Database 0.13
Category members GO Category GO:0016055 Wnt signaling pathway Database 0.11
Category members GO Category GO:0000122 negative regulation of transcription from RNA polymerase II promoter Database 0.02
Category members GO Category GO:0016570 histone modification Database 0


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