RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
YBX2	2	0.320	-0.460		0.674	0.402	-1.244	-0.405
EIF2S2	2	-2.220	4.160		1.238	-0.784	0.387	0.537
EIF2S2	2	-2.220	4.160	-0.289
CSDE1	1	0.850	-0.360	0.302	-1.033	-0.820	-0.426	-0.036
ERCC1	1	-1.720	3.820
ERCC1	1	-1.460	2.450
CTNNA1	1	-0.520	1.660		-0.690	-1.164
CTNNA1	1	-0.520	1.660	0.139			0.436	0.323
MSH2	1	-0.130	0.010	0.224	0.457	0.838	0.840	0.366
HMGCS1	1	-1.450	3.080	-0.209				0.030
PRDX4	1	2.180	-0.730	-0.124	0.235	0.449	0.389	0.252
RRM1	1			0.717	1.039	0.509
FANCA	1	-1.940	3.290
FANCA	1	-1.940	3.290		0.441
NCOA1	0	1.240	-0.460
BAX	0	1.590	-1.170				0.811	0.359
PATZ1	0	0.540	-0.680		0.512	0.446
GATA3	0	0.000	-0.660
WNT5A	0
MEA1	0	0.980	-0.830
GATA4	0	-0.670	0.350
RNF38	0	-1.200	1.280
GATA6	0	-0.210	-0.020	-0.027			-0.582	-0.834
TMF1	0	1.240	-1.110				0.028	0.252
HMGA2	0	0.340	-0.490
ARID5B	0	0.580	-0.330
HMGB2	0	-0.350	0.170			-1.810	0.655	0.285
BCL2L1	0
BCL2	0	0.910	-0.740
ZFP42	0	-0.080	-0.300					-2.163

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARID5B	Phosphorylation	S264	0.496	0.623	_RDS(ph)FSGVK_
BAX	Ubiquitylation	K57		-1.174	_MGGEAPELALDPVPQDASTK(gl)K_
BAX	Ubiquitylation	K58	-1.718	-1.174	_MGGEAPELALDPVPQDASTKK(gl)_
BAX	Ubiquitylation	K64	0.708	1.306	_LSECLK(gl)R_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
BCL2L1	Ubiquitylation	K87	0.026		_EVIPMAAVK(gl)QALR_
CSDE1	Ubiquitylation	K127	-1.399	-0.753	_TGK(gl)PIAVK_
CSDE1	Ubiquitylation	K132	-0.229		_TGKPIAVK(gl)LVK_
CSDE1	Ubiquitylation	K137	-0.951		_IK(gl)QEILPEER_
CSDE1	Ubiquitylation	K285	-0.577	1.525	_NGK(gl)EVATDVR_
CSDE1	Ubiquitylation	K323	-2.005	-1.398	_VPSK(gl)NQNDPLPGR_
CSDE1	Ubiquitylation	K334	-0.130		_IK(gl)VDFVIPK_
CSDE1	Ubiquitylation	K353	0.281		_SK(gl)VTLLEGDHVR_
CSDE1	Ubiquitylation	K410	0.593		_DGFGFIK(gl)CVDR_
CSDE1	Phosphorylation	S560	-0.057	0.159	_LLGRNS(ph)NSK_
CSDE1	Ubiquitylation	K694	0.626		_GDCLQK(gl)GESVK_
CSDE1	Ubiquitylation	K743	-1.247		_DQFGFINYEVGDSKK(gl)_
CSDE1	Ubiquitylation	K775	-0.518	1.078	_TGK(gl)CSACNVWR_
CSDE1	Ubiquitylation	K789	-1.573		_VCEGPK(gl)AVAAPRPDR_
CSDE1	Ubiquitylation	K804	-0.486	-0.563	_LK(gl)NITLDDASAPR_
CTNNA1	Ubiquitylation	K16	-0.194	-0.141	_WDPK(gl)SLEIR_
CTNNA1	Ubiquitylation	K45	-1.131	-0.728	_LLEPLVTQVTTLVNTNSK(gl)GPSNK_
CTNNA1	Ubiquitylation	K120		-0.333	_AAAGEFADDPCSSVK(gl)R_
CTNNA1	Ubiquitylation	K414	0.977		_NGNEK(gl)EVKEYAQVFR_
CTNNA1	Ubiquitylation	K417	0.211		_NGNEK(gl)EVKEYAQVFR_
CTNNA1	Phosphorylation	S641	-0.056	0.089	_TPEELDDS(ph)DFETEDFDVR_
CTNNA1	Phosphorylation	T654	0.808	0.392	_SRT(ph)SVQTEDDQLIAGQSAR_
CTNNA1	Phosphorylation	S655	1.043	0.882	_SRTS(ph)VQTEDDQLIAGQSAR_
CTNNA1	Ubiquitylation	K683	3.760	-0.837	_AIMAQLPQEQKAK(gl)_
CTNNA1	Ubiquitylation	K747		-0.384	_NTSDVISAAK(gl)K_
CTNNA1	Ubiquitylation	K748	-0.083	-0.384	_NTSDVISAAKK(gl)_
EIF2S2	Phosphorylation	S2	0.392	0.407	_(ac)S(ph)GDEM(ox)IFDPTM(ox)SKK_
EIF2S2	Phosphorylation	S105	0.614	0.180	_DLKIES(ph)DVQEPTEPEDDLDIMLGNK_
EIF2S2	Phosphorylation	T111	0.393	-0.207	_IESDVQEPT(ph)EPEDDLDIMLGNKK_
EIF2S2	Ubiquitylation	K190	-1.188		_EK(gl)NPDMVAGEK_
EIF2S2	Ubiquitylation	K199	0.815		_EKNPDMVAGEK(gl)R_
EIF2S2	Ubiquitylation	K265	1.379		_FQQK(gl)QIENVLR_
EIF2S2	Ubiquitylation	K276	4.065		_YIK(gl)EYVTCHTCR_
EIF2S2	Ubiquitylation	K293	-0.051	0.495	_SPDTILQK(gl)DTR_
EIF2S2	Ubiquitylation	K324	0.924	0.471	_TGFQAVTGK(gl)R_
ERCC1	Ubiquitylation	K162	-0.634		_LQSLGK(gl)NFALR_
ERCC1	Ubiquitylation	K243		-0.245	_VTECLTTVK(gl)SVNK_
ERCC1	Ubiquitylation	K281		-1.586	_EDLALCPGLGPQK(gl)AR_
FANCA	Ubiquitylation	K44		-0.981	_LK(gl)ESAVR_
FANCA	Ubiquitylation	K249	-0.498	-0.588	_GFQK(gl)NSDLRR_
FANCA	Ubiquitylation	K261		0.217	_TVEPEK(gl)MPQVTVDVLQR_
FANCA	Ubiquitylation	K608		-0.873	_VAFIESLK(gl)R_
FANCA	Ubiquitylation	K1079		-0.322	_ELLMYK(gl)R_
FANCA	Ubiquitylation	K1199		-0.882	_ELQK(gl)LQEGR_
FANCA	Ubiquitylation	K1387		-0.462	_SLELK(gl)GQAGQPR_
GATA3	Phosphorylation	S162	-1.195	-0.563	_DVS(ph)PDPSLSTPGSAGSAR_
GATA4	Phosphorylation	S109	-0.520	-0.425	_FS(ph)FPGTTGSLAAAAAAAAAR_
GATA4	Phosphorylation	S407	-0.185	0.124	_LS(ph)PQGYASPVSQSPQTSSK_
HMGA2	Phosphorylation	S44	-0.564	-0.762	_KQQQEPTGEPS(ph)PK_
HMGA2	Phosphorylation	S105	-0.055	-0.046	_KPAQEETEETSSQES(ph)AEED_
HMGB2	Ubiquitylation	K114	0.323		_IK(gl)SEHPGLSIGDTAK_
HMGB2	Ubiquitylation	K128	0.363		_K(gl)LGEMWSEQSAK_
HMGB2	Ubiquitylation	K147	0.205	-0.408	_DKQPYEQK(gl)AAK_
HMGB2	Ubiquitylation	K150	-0.251		_DKQPYEQKAAK(gl)_
HMGCS1	Phosphorylation	S4	-1.161	-1.052	_PGS(ph)LPLNAEACWPK_
HMGCS1	Ubiquitylation	K100		-0.673	_LEVGTETIIDK(gl)SK_
HMGCS1	Ubiquitylation	K102	-1.761	-0.427	_LEVGTETIIDKSK(gl)_
HMGCS1	Ubiquitylation	K273	-0.550	-0.790	_LVQK(gl)SLAR_
HMGCS1	Ubiquitylation	K321	-0.588	-0.833	_AFMK(gl)ASSELFSQK_
HMGCS1	Ubiquitylation	K330		-0.934	_ASSELFSQK(gl)TK_
HMGCS1	Ubiquitylation	K332	-0.326		_ASSELFSQKTK(gl)_
HMGCS1	Ubiquitylation	K409		-0.898	_ITASLCDLK(gl)SR_
HMGCS1	Ubiquitylation	K428		-1.720	_TGVAPDVFAENMK(gl)LR_
HMGCS1	Phosphorylation	S495	-1.763	-1.842	_RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAKK_
MEA1	Phosphorylation	S114	-1.444	-1.997	_IQALGLHLPDPPLES(ph)EDEDEEGATALNNHSSIPMDPEHVELVK_
MSH2	Ubiquitylation	K212		-0.233	_ECVLPGGETAGDMGK(gl)LR_
MSH2	Ubiquitylation	K249	0.461		_K(gl)GEQMNSAVLPEMENQVAVSSLSAVIK_
MSH2	Ubiquitylation	K347		2.867	_LVNQWIK(gl)QPLMDK_
MSH2	Ubiquitylation	K531	1.040		_VTCKEEK(gl)VLR_
MSH2	Ubiquitylation	K555		0.164	_FTNSK(gl)LTSLNEEYTK_
MSH2	Ubiquitylation	K635		-0.376	_IILK(gl)ASR_
NCOA1	Phosphorylation	S22	0.503	0.810	_KGS(ph)PCDTLASSTEK_
PRDX4	Ubiquitylation	K265	-0.267	0.111	_LK(gl)YFDKLN_
RNF38	Ubiquitylation	K440		-0.580	_GLTK(gl)ADIEQLPSYR_
RRM1	Ubiquitylation	K158	0.366	0.759	_SYLLK(gl)INGK_
RRM1	Ubiquitylation	K376	0.409	0.370	_LYASYEK(gl)QGR_
RRM1	Ubiquitylation	K414		0.015	_K(gl)SNQQNLGTIK_
RRM1	Ubiquitylation	K465	-0.049	0.272	_K(gl)LAEVTK_
RRM1	Ubiquitylation	K471	1.117	1.347	_LAEVTK(gl)VVVR_
RRM1	Ubiquitylation	K496	0.699	1.559	_IIDINYYPVPEACLSNK(gl)R_
RRM1	Ubiquitylation	K587		0.487	_VLKEK(gl)IAK_
RRM1	Ubiquitylation	K590	-0.395	0.551	_IAK(gl)YGIR_
RRM1	Ubiquitylation	K689		0.606	_TVWEISQK(gl)TVLK_
RRM1	Ubiquitylation	K693		0.427	_TVLK(gl)MAAER_
RRM1	Ubiquitylation	K733		0.748	_QGLK(gl)TGMYYLR_
RRM1	Ubiquitylation	K754	-0.746	-1.217	_TRPAANPIQFTLNK(gl)EK_
RRM1	Ubiquitylation	K756	-0.746	-1.217	_TRPAANPIQFTLNK(gl)EK_
TMF1	Phosphorylation	S160		-1.216	_DSSLCVS(ph)GETLAAGTSSPK_
TMF1	Phosphorylation	S344	0.779	-0.050	_SVSEINS(ph)DDELSGK_
TMF1	Phosphorylation	S399	-0.276	-0.307	_S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_
TMF1	Phosphorylation	T401	-0.276	-0.307	_S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_
YBX2	Phosphorylation	S34	-1.234	-1.488	_S(ph)PVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEK_
YBX2	Phosphorylation	S79		-2.262	_SPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGS(ph)EDAEKK_
YBX2	Ubiquitylation	K90	3.724	2.851	_VLATK(gl)VLGTVK_
YBX2	Ubiquitylation	K96	5.830	4.056	_VLGTVK(gl)WFNVR_
YBX2	Ubiquitylation	K113	1.472	1.136	_NDTK(gl)EDVFVHQTAIK_
YBX2	Ubiquitylation	K124	-0.184	0.337	_NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX2	Ubiquitylation	K125	-0.123	0.220	_NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX2	Phosphorylation	S203	-0.609	-0.604	_NYAGEEEEEGSGS(ph)SEGFDPPATDR_
YBX2	Ubiquitylation	K268	-0.103	-0.702	_IQAGEIGEMK(gl)DGVPEGAQLQGPVHR_
YBX2	Phosphorylation	S324	-1.327	-0.720	_PAPAVGEAEDKENQQATSGPNQPS(ph)VR_