RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
YBX2	2	0.320	-0.460		-0.197	-0.190	-1.344	-0.617
YBX3	2	-0.210	0.250		0.674	0.402	-1.244	-0.405
MARK2	2	0.390	-0.570				-0.342	-0.924
VCP	2	1.650	-0.640	-0.182	0.578	-0.596	0.007	-0.036
CLINT1	1	0.090	-0.140	-0.584			-0.316	0.083
SH3GL3	1	-1.870	3.600
SH3GL1	1	0.960	-1.010
PCYT1A	1	-0.890	0.640
PCYT1A	1	-0.890	0.640				1.645	1.375
PACSIN3	1	0.140	0.230				1.239	0.925
PITPNB	1	2.270	-1.020
PITPNB	1	2.270	-1.020				-0.307	-0.236
BAD	0	-0.660	1.190
PPP5C	0	-0.140	-0.230	0.937
PPP5C	0	-0.140	-0.230
PEX3	0	-0.020	-0.330				0.666	0.365
EPN3	0	-0.820	0.920	0.286			0.676	0.159
EPN1	0	0.000	-0.210	0.286			0.676	0.159
EPN2	0	-0.550	0.310
EPN2	0	-0.550	0.310
BPIFB2	0	0.310	-0.940					0.035
OSBPL6	0	0.220	-0.850
CADPS2	0	0.840	-0.140
STARD7	0	1.240	-0.220
APOB	0	0.130	0.050				-4.359	0.702
BAX	0	1.590	-1.170				0.811	0.359
NSFL1C	0	1.700	-1.170
PACSIN2	0			0.657			-0.118	-3.051
SH3GL2	0	0.310	-0.450
ACBD5	0	-0.110	0.360
ACBD5	0	-0.110	0.360				0.678	0.349
COL4A3BP	0	-0.460	0.000
HDLBP	0	-0.130	0.010		-0.328	-0.576	-1.371	-0.034
HDLBP	0	-0.130	0.010	0.802			-0.874	-0.314
OSBPL9	0	-0.180	-0.250	0.139			0.339	-0.315
APOA1	0	0.850	-0.420				-3.959
TRIP10	0	0.140	-0.170
APOL2	0	0.320	-0.410
FNBP1L	0	0.890	-0.940
GLTP	0	-0.220	-0.170
OSBPL11	0	-0.210	-0.470	0.222			-0.178	-0.416
FER	0	0.540	-0.510		0.407
PITPNC1	0	-0.700	1.330
DBI	0	-0.220	-0.360					-5.332
AP2M1	0	-1.250	2.200	-0.363	0.794	-0.187	0.544	0.370
AP2M1	0	-1.250	2.200
FABP5	0	1.190	-1.160	-1.980
FABP5	0	1.910	-1.230	-1.980
DLC1	0	-0.650	0.390
MELK	0	-0.620	0.710				-0.249	-0.278
RUFY1	0	-0.690	0.630
APOLD1	0	-1.090	1.240
ACBD4	0	0.120	0.640				0.678	0.349
AP2A2	0	-1.330	2.130	1.006	0.165	0.468	0.244	0.392
FNBP1	0	0.860	-0.550
S100A13	0	0.450	-0.250

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACBD5	Phosphorylation	T170	-0.452	-0.167	_SSDITSDLGNVLTST(ph)PNAK_
ACBD5	Ubiquitylation	K174	-0.428		_SSDITSDLGNVLTSTPNAK(gl)TVNGK_
ACBD5	Phosphorylation	S185	0.301	0.460	_AESSDS(ph)GAES(ph)EEEEAQEEVK_
ACBD5	Phosphorylation	S189	0.301	0.460	_AESSDS(ph)GAES(ph)EEEEAQEEVK_
ACBD5	Ubiquitylation	K256	-0.844		_STEEVK(gl)PIDENLGQTGK_
ACBD5	Phosphorylation	S407		0.502	_MQHLS(ph)EGTK_
ACBD5	Ubiquitylation	K411	-0.376	0.365	_M(ox)QHLSEGTK(gl)GR_
ACBD5	Ubiquitylation	K458		-0.346	_LQK(gl)LETLTALQAK_
AP2A2	Ubiquitylation	K6	-0.477	0.972	_PAVSK(gl)GDGMR_
AP2A2	Ubiquitylation	K616	-0.123		_ESSILAKLK(gl)_
AP2A2	Ubiquitylation	K631	-0.267	-0.317	_KGPSTVTDLEDTK(gl)R_
AP2M1	Ubiquitylation	K249	0.386	0.460	_IVIEK(gl)QGK_
AP2M1	Ubiquitylation	K263	-0.058	-0.236	_SGK(gl)QSIAIDDCTFHQCVR_
AP2M1	Ubiquitylation	K281	-0.401	0.214	_LSK(gl)FDSER_
AP2M1	Ubiquitylation	K306	-2.014	-0.836	_TTK(gl)DIILPFR_
AP2M1	Ubiquitylation	K337	-1.115		_SNFK(gl)PSLLAQK_
AP2M1	Ubiquitylation	K364	-1.253		_IPTPLNTSGVQVICMK(gl)GK_
APOL2	Ubiquitylation	K305	0.315	-0.407	_NLDQSGTNVAK(gl)VMK_
APOLD1	Ubiquitylation	K229		0.937	_VSQAVLKAK(gl)_
APOLD1	Ubiquitylation	K260		1.342	_VQLCTK(gl)SSR_
BAD	Phosphorylation	S74	-0.904	-0.452	_HS(ph)SYPAGTEDDEGM(ox)GEEPSPFR_
BAD	Phosphorylation	S75	-0.914	-0.660	_HSS(ph)YPAGTEDDEGMGEEPSPFR_
BAD	Phosphorylation	S97		0.056	_S(ph)RSAPPNLWAAQR_
BAD	Phosphorylation	S99	-0.299	0.161	_S(ph)APPNLWAAQR_
BAD	Phosphorylation	S118	1.277	1.089	_RM(ox)S(ph)DEFVDSFKK_
BAX	Ubiquitylation	K57		-1.174	_MGGEAPELALDPVPQDASTK(gl)K_
BAX	Ubiquitylation	K58	-1.718	-1.174	_MGGEAPELALDPVPQDASTKK(gl)_
BAX	Ubiquitylation	K64	0.708	1.306	_LSECLK(gl)R_
CADPS2	Phosphorylation	S58	-0.487	-0.351	_SVS(ph)PSPSVLSEGR_
CLINT1	Ubiquitylation	K6	0.944	0.734	_(ac)MLNMWK(gl)VR_
CLINT1	Ubiquitylation	K183		0.133	_SK(gl)WDEEWDKNK_
CLINT1	Ubiquitylation	K200	1.330	0.380	_SAFPFSDK(gl)LGELSDK_
CLINT1	Ubiquitylation	K207	0.681	0.218	_LGELSDK(gl)IGSTIDDTISK_
CLINT1	Ubiquitylation	K218	3.052	1.316	_IGSTIDDTISK(gl)FR_
CLINT1	Phosphorylation	S299	0.178	0.644	_TIDLGAAAHYTGDKAS(ph)PDQNASTHTPQSSVK_
CLINT1	Phosphorylation	T308	-0.947	-0.444	_ASPDQNASTHT(ph)PQSSVK_
CLINT1	Ubiquitylation	K314	0.979	-1.156	_ASPDQNASTHTPQSSVK(gl)TSVPSSK_
CLINT1	Ubiquitylation	K467	1.885	0.486	_SQNTDMVQK(gl)SVSK_
CLINT1	Ubiquitylation	K625	2.083	0.163	_QDAFANFANFSK(gl)_
COL4A3BP	Phosphorylation	S377	-0.986	-1.717	_SSS(ph)MSSIDLVSASDDVHR_
DBI	Ubiquitylation	K134	0.576	1.022	_AYINK(gl)VEELK_
DLC1	Phosphorylation	S842		-0.139	_TGS(ph)FHGPGHISLR_
DLC1	Phosphorylation	S946		-0.497	_FSDEGDSDSALDSVSPCPSS(ph)PK_
EPN1	Ubiquitylation	K97	-0.214	0.731	_VSQQCK(gl)ENMYAVQTLK_
EPN1	Ubiquitylation	K107	-0.288	1.227	_ENMYAVQTLK(gl)DFQYVDR_
EPN1	Ubiquitylation	K117	0.237		_DFQYVDRDGK(gl)DQGVNVR_
EPN1	Ubiquitylation	K128	0.126		_AK(gl)QLVALLRDEDR_
EPN1	Phosphorylation	S417	0.164		_TALPTS(ph)GSSAGELELLAGEVPAR_
EPN1	Phosphorylation	S420	-0.776	-0.436	_TALPTSGSS(ph)AGELELLAGEVPAR_
EPN1	Phosphorylation	S435	0.801	0.890	_S(ph)PGAFDMSGVR_
EPN1	Phosphorylation	T470	-1.386	-1.782	_T(ph)PESFLGPNAALVDLDSLVSRPGPTPPGAK_
EPN1	Phosphorylation	S473	-0.700	-0.430	_KTPES(ph)FLGPNAALVDLDSLVSR_
EPN2	Ubiquitylation	K135	0.492		_QLVALLK(gl)DEER_
EPN2	Phosphorylation	S172		-0.027	_GS(ph)SQPNLSTSHSEQEYGK_
EPN2	Phosphorylation	S173	0.271	-0.203	_GSS(ph)QPNLSTSHSEQEYGK_
EPN2	Phosphorylation	S192	-0.581	-0.207	_AGGS(ph)PASYHGSTSPR_
EPN3	Ubiquitylation	K97	-0.214	0.731	_VSQQCK(gl)ENMYAVQTLK_
EPN3	Ubiquitylation	K107	-0.288	1.227	_ENMYAVQTLK(gl)DFQYVDR_
EPN3	Ubiquitylation	K117	0.237		_DFQYVDRDGK(gl)DQGVNVR_
EPN3	Ubiquitylation	K128	0.126		_AK(gl)QLVALLRDEDR_
EPN3	Phosphorylation	S417	0.164		_TALPTS(ph)GSSAGELELLAGEVPAR_
EPN3	Phosphorylation	S420	-0.776	-0.436	_TALPTSGSS(ph)AGELELLAGEVPAR_
EPN3	Phosphorylation	S435	0.801	0.890	_S(ph)PGAFDMSGVR_
EPN3	Phosphorylation	T470	-1.386	-1.782	_T(ph)PESFLGPNAALVDLDSLVSRPGPTPPGAK_
EPN3	Phosphorylation	S473	-0.700	-0.430	_KTPES(ph)FLGPNAALVDLDSLVSR_
FABP5	Ubiquitylation	K34	-0.220		_K(gl)MGAMAKPDCIITCDGK_
FABP5	Ubiquitylation	K72	0.064		_TTQFSCTLGEK(gl)FEETTADGR_
FNBP1	Phosphorylation	S296	0.887	1.145	_TVS(ph)DNSLSNSR_
FNBP1L	Phosphorylation	S295	0.730	0.489	_TIS(ph)DGTISASK_
FNBP1L	Phosphorylation	T496		-0.149	_HSSDINHLVT(ph)QGRESPEGSYTDDANQEVR_
FNBP1L	Phosphorylation	S501	-0.322	-0.235	_ES(ph)PEGSYTDDANQEVR_
GLTP	Ubiquitylation	K57	0.509		_IK(gl)AVYDTNPAK_
HDLBP	Phosphorylation	S31	0.021	0.223	_VATLNS(ph)EEESDPPTYK_
HDLBP	Ubiquitylation	K494		0.899	_IEGDPQGVQQAK(gl)R_
HDLBP	Ubiquitylation	K991	0.294		_YVIGQK(gl)GSGIRK_
MARK2	Phosphorylation	S387		3.794	_PSADLTNSS(ph)APSPSHK_
MARK2	Phosphorylation	S390	5.149	4.932	_PSADLTNSSAPS(ph)PSHK_
MARK2	Phosphorylation	S456	-1.253	-1.182	_VPAS(ph)PLPGLER_
MARK2	Phosphorylation	S486	-0.028	0.163	_SRNS(ph)PLLER_
MARK2	Phosphorylation	S569	-0.860	-0.742	_VPVAS(ph)PSAHNISSSGGAPDR_
MARK2	Phosphorylation	S571	-0.724		_VPVASPS(ph)AHNISSSGGAPDR_
MELK	Ubiquitylation	K55		-0.604	_IK(gl)TEIEALK_
MELK	Ubiquitylation	K419		-1.760	_TPANK(gl)LK_
MELK	Ubiquitylation	K597		-0.858	_GYTLK(gl)CQTQSDFGK_
MELK	Ubiquitylation	K650	-0.307		_LVEDILSSCK(gl)V_
NSFL1C	Phosphorylation	S114	0.691	0.609	_S(ph)PNELVDDLFK_
NSFL1C	Ubiquitylation	K124	-0.355	0.528	_SPNELVDDLFK(gl)GAK_
NSFL1C	Ubiquitylation	K127	0.495	0.191	_GAK(gl)EHGAVAVER_
NSFL1C	Ubiquitylation	K139	-0.671		_VTK(gl)SPGETSKPRPFAGGGYR_
NSFL1C	Phosphorylation	S140	0.251	0.274	_VTKS(ph)PGETSKPR_
NSFL1C	Ubiquitylation	K146	-0.800		_SPGETSK(gl)PRPFAGGGYR_
NSFL1C	Ubiquitylation	K172	-0.313	0.767	_LGAAPEEESAYVAGEK(gl)R_
NSFL1C	Ubiquitylation	K188		1.048	_LWK(gl)SGFSLDNGELR_
NSFL1C	Ubiquitylation	K251	-0.154	0.172	_GAFK(gl)AFTGEGQK_
NSFL1C	Ubiquitylation	K259	-1.303		_AFTGEGQK(gl)LGSTAPQVLSTSSPAQQAENEAK_
NSFL1C	Phosphorylation	S272	-0.296	-0.492	_LGSTAPQVLSTSS(ph)PAQQAENEAK_
OSBPL11	Phosphorylation	S179		0.034	_SFSLASSS(ph)NSPISQR_
OSBPL11	Phosphorylation	S181	-0.143	-0.159	_SFSLASSSNS(ph)PISQR_
OSBPL11	Phosphorylation	S189	0.718	0.168	_RPS(ph)QNAISFFNVGHSK_
OSBPL6	Phosphorylation	S32	0.378	0.355	_DS(ph)RQSIHILER_
OSBPL6	Phosphorylation	S44	-0.017	0.896	_TAS(ph)SSTEPSVSR_
OSBPL6	Phosphorylation	S343		-0.917	_LHS(ph)SNPNLCADIEFQTPPSHLTDPLESSTDYTK_
OSBPL6	Phosphorylation	S344	-1.161	-1.376	_LHSS(ph)NPNLCADIEFQTPPSHLTDPLESSTDYTK_
OSBPL9	Phosphorylation	S342		1.042	_RLIDSSGSASVLTHSSS(ph)GNSLK_
OSBPL9	Ubiquitylation	K631		0.099	_ITAEIFSPNDK(gl)K_
OSBPL9	Ubiquitylation	K632	-0.516	0.099	_ITAEIFSPNDKK(gl)_
PACSIN3	Ubiquitylation	K148	1.059		_LK(gl)EVEASKK_
PACSIN3	Ubiquitylation	K154	0.880		_LKEVEASK(gl)K_
PACSIN3	Phosphorylation	S320	0.462	0.580	_GGRS(ph)PDEVTLTSIVPTR_
PACSIN3	Phosphorylation	T348	1.778		_DGTAPPPQSPGSPGT(ph)GQDEEWSDEESPRK_
PACSIN3	Phosphorylation	S355	-0.685	-0.861	_DGTAPPPQSPGSPGTGQDEEWS(ph)DEESPR_
PCYT1A	Ubiquitylation	K228		0.196	_GYTAK(gl)ELNVSFINEK_
PCYT1A	Phosphorylation	S331	0.642	0.418	_SPS(ph)PSFR_
PCYT1A	Phosphorylation	T342	-1.306	0.087	_T(ph)SPPCSPANLSR_
PCYT1A	Phosphorylation	S343	-1.306	0.087	_TS(ph)PPCS(ph)PANLSR_
PCYT1A	Phosphorylation	S347	-1.095	-1.321	_TS(ph)PPCS(ph)PANLSR_
PEX3	Ubiquitylation	K262	0.335	0.168	_DITTIK(gl)LLNETR_
PITPNB	Ubiquitylation	K5	-0.130	0.398	_VLIK(gl)EFR_
PITPNB	Ubiquitylation	K65	0.073		_IYHLK(gl)SK_
PITPNB	Ubiquitylation	K179	-0.430		_K(gl)ELANSPDCPQMCAYK_
PITPNB	Ubiquitylation	K215	1.032		_VENFIQK(gl)QEKR_
PITPNB	Ubiquitylation	K218	1.442		_VENFIQKQEK(gl)R_
PITPNC1	Phosphorylation	S273		-0.798	_SAPS(ph)SAPSTPLSTDAPEFLSVPK_
PITPNC1	Phosphorylation	S299	-0.718		_S(ph)APETLTLPDPEK_
PPP5C	Ubiquitylation	K42	-0.703		_AK(gl)DYENAIK_
RUFY1	Ubiquitylation	K201		-1.479	_NLPELK(gl)TAVGR_
RUFY1	Ubiquitylation	K587	1.069		_MELQQVEGLKK(gl)_
S100A13	Ubiquitylation	K59		0.272	_DVGSLDEK(gl)MK_
S100A13	Ubiquitylation	K61		0.272	_DVGSLDEK(gl)MK_
SH3GL1	Ubiquitylation	K7		-0.268	_(ac)SVAGLK(gl)K_
SH3GL1	Ubiquitylation	K8	-0.654		_(ac)SVAGLKK(gl)_
SH3GL1	Ubiquitylation	K76	-0.032	1.606	_LTMLNTVSK(gl)IR_
SH3GL1	Ubiquitylation	K177	-0.477	0.450	_QGK(gl)IPDEELR_
SH3GL1	Phosphorylation	S287	-0.011	0.143	_IAASS(ph)SFR_
SH3GL1	Phosphorylation	S288	0.348	-0.194	_IAASSS(ph)FR_
SH3GL2	Ubiquitylation	K7		-0.268	_(ac)SVAGLK(gl)K_
SH3GL2	Ubiquitylation	K8	-0.654		_(ac)SVAGLKK(gl)_
SH3GL2	Ubiquitylation	K177	-0.477	0.450	_QGK(gl)IPDEELR_
SH3GL3	Ubiquitylation	K7		-0.268	_(ac)SVAGLK(gl)K_
SH3GL3	Ubiquitylation	K8	-0.654		_(ac)SVAGLKK(gl)_
STARD7	Ubiquitylation	K148		-0.409	_WEMVMDKK(gl)_
STARD7	Ubiquitylation	K326		-0.981	_AK(gl)NMEIK_
STARD7	Ubiquitylation	K331		-0.447	_NMEIK(gl)VK_
TRIP10	Phosphorylation	S296	0.064	0.030	_APS(ph)DSSLGTPSDGRPELR_
VCP	Phosphorylation	S3	0.795	1.142	_(ac)AS(ph)GADSKGDDLSTAILK_
VCP	Phosphorylation	S7	0.312	0.941	_(ac)ASGADS(ph)KGDDLSTAILK_
VCP	Ubiquitylation	K8	-0.439	-0.154	_(ac)ASGADSK(gl)GDDLSTAILK_
VCP	Ubiquitylation	K18	-0.452	0.181	_GDDLSTAILK(gl)QK_
VCP	Ubiquitylation	K20	-0.512	0.529	_(ac)ASGADSKGDDLSTAILKQK(gl)_
VCP	Ubiquitylation	K60	0.678	0.493	_GDTVLLK(gl)GKK_
VCP	Ubiquitylation	K81	0.084		_EAVCIVLSDDTCSDEK(gl)IR_
VCP	Ubiquitylation	K109	-0.847	-0.260	_LGDVISIQPCPDVK(gl)YGK(gl)R_
VCP	Ubiquitylation	K112	-0.736	-0.276	_LGDVISIQPCPDVK(gl)YGK(gl)R_
VCP	Ubiquitylation	K148	-0.262	-0.087	_K(gl)GDIFLVR_
VCP	Ubiquitylation	K211	1.383	0.902	_K(gl)QLAQIK_
VCP	Ubiquitylation	K236	-0.526	-0.178	_AIGVK(gl)PPR_
VCP	Ubiquitylation	K251	-0.110		_GILLYGPPGTGK(gl)TLIAR_
VCP	Ubiquitylation	K336	0.522		_IVSQLLTLMDGLK(gl)QR_
VCP	Ubiquitylation	K386	1.339	0.706	_LEILQIHTK(gl)NM(ox)K_
VCP	Ubiquitylation	K389	0.568	1.195	_LEILQIHTKNMK(gl)_
VCP	Ubiquitylation	K505	0.377	0.794	_FLK(gl)FGMTPSK_
VCP	Ubiquitylation	K524		-0.528	_GVLFYGPPGCGK(gl)TLLAK_
VCP	Ubiquitylation	K529		-0.250	_GVLFYGPPGCGKTLLAK(gl)_
VCP	Ubiquitylation	K565	0.645	0.689	_EIFDK(gl)AR_
VCP	Ubiquitylation	K615	1.209	1.270	_VINQILTEMDGMSTKK(gl)_
VCP	Ubiquitylation	K651	-1.709	-0.719	_LDQLIYIPLPDEK(gl)SR_
VCP	Ubiquitylation	K658	0.362	0.711	_VAILK(gl)ANLR_
VCP	Ubiquitylation	K663	-0.839		_K(gl)SPVAKDVDLEFLAK_
VCP	Ubiquitylation	K668	-0.536	0.265	_SPVAK(gl)DVDLEFLAK_
VCP	Ubiquitylation	K696	1.574	1.691	_ACK(gl)LAIR_
VCP	Ubiquitylation	K754	0.510	0.939	_K(gl)YEMFAQTLQQSR_
YBX2	Ubiquitylation	K64	5.830	4.056	_VLGTVK(gl)WFNVR_
YBX2	Ubiquitylation	K137	-0.751	0.084	_GAEAANVTGPGGVPVQGSK(gl)YAADR_
YBX2	Phosphorylation	Y162		-0.210	_NYQQNY(ph)QNSESGEKNEGSESAPEGQAQQR_
YBX2	Phosphorylation	S165	0.119	0.151	_NYQQNYQNS(ph)ESGEK_
YBX2	Ubiquitylation	K170	-0.297	0.298	_NYQQNYQNSESGEK(gl)NEGSESAPEGQAQQR_
YBX2	Phosphorylation	S174	0.041	0.228	_NEGS(ph)ESAPEGQAQQR_
YBX2	Phosphorylation	S176	0.061	0.075	_NEGSES(ph)APEGQAQQR_
YBX2	Phosphorylation	S209	0.658	-0.148	_RPQYS(ph)NPPVQGEVM(ox)EGADNQGAGEQGRPVR_
YBX3	Phosphorylation	S34	-1.234	-1.488	_S(ph)PVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEK_
YBX3	Phosphorylation	S79		-2.262	_SPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGS(ph)EDAEKK_
YBX3	Ubiquitylation	K90	3.724	2.851	_VLATK(gl)VLGTVK_
YBX3	Ubiquitylation	K96	5.830	4.056	_VLGTVK(gl)WFNVR_
YBX3	Ubiquitylation	K113	1.472	1.136	_NDTK(gl)EDVFVHQTAIK_
YBX3	Ubiquitylation	K124	-0.184	0.337	_NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX3	Ubiquitylation	K125	-0.123	0.220	_NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX3	Phosphorylation	S203	-0.609	-0.604	_NYAGEEEEEGSGS(ph)SEGFDPPATDR_
YBX3	Ubiquitylation	K268	-0.103	-0.702	_IQAGEIGEMK(gl)DGVPEGAQLQGPVHR_
YBX3	Phosphorylation	S324	-1.327	-0.720	_PAPAVGEAEDKENQQATSGPNQPS(ph)VR_