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Query: YBX3

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
YBX3 2 8.350 -0.210 0.250 0.674 0.402 -1.244 -0.405

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
YBX3 Ubiquitylation K96 5.830 4.056 _VLGTVK(gl)WFNVR_
YBX3 Ubiquitylation K90 3.724 2.851 _VLATK(gl)VLGTVK_
YBX3 Ubiquitylation K113 1.472 1.136 _NDTK(gl)EDVFVHQTAIK_
YBX3 Ubiquitylation K124 -0.184 0.337 _NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX3 Ubiquitylation K125 -0.123 0.220 _NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX3 Phosphorylation S203 -0.609 -0.604 _NYAGEEEEEGSGS(ph)SEGFDPPATDR_
YBX3 Ubiquitylation K268 -0.103 -0.702 _IQAGEIGEMK(gl)DGVPEGAQLQGPVHR_
YBX3 Phosphorylation S324 -1.327 -0.720 _PAPAVGEAEDKENQQATSGPNQPS(ph)VR_
YBX3 Phosphorylation S34 -1.234 -1.488 _S(ph)PVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEK_
YBX3 Phosphorylation S79 -2.262 _SPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGS(ph)EDAEKK_

Background Information for YBX3:


Pubmed-YBX3 »
Uniprot-YBX3 »
Biogrid-YBX3 »
ProteomicsDB-YBX3 »

Tumorportal-YBX3 »
COSMIC-YBX3 »
GenomeRNAi-YBX3 »
Genecards-YBX3


Protein-protein Interactions for YBX3
Show screen data for Category Name and Description Link to cat description Data Source


Protein Domains in YBX3
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members NA-bd_OB-fold IPR012340 4.37
Category members CSP_DNA-bd IPR002059 0.04
Category members Cold_shock_prot IPR011129 0.04


Protein complexes (CORUM database) featuring YBX3
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 1227 H2AX complex II Database 7.93


Categories featuring YBX3
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0030529 ribonucleoprotein complex Database 8.45
Category members GO Category GO:0003697 single-stranded DNA binding Database 4.24
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0017048 Rho GTPase binding Database 0.69
Category members GO Category GO:0005923 tight junction Database 0.69
Category members GO Category GO:0003690 double-stranded DNA binding Database 0.66
Category members GO Category GO:0003700 sequence-specific DNA binding transcription factor activity Database 0.63
Category members GO Category GO:0043066 negative regulation of apoptotic process Database 0.6
Category members GO Category GO:0048471 perinuclear region of cytoplasm Database 0.39
Category members GO Category GO:0003730 mRNA 3'-UTR binding Database 0.24
Category members GO Category GO:0001701 in utero embryonic development Database 0.2
Category members GO Category GO:0005844 polysome Database 0.09
Category members GO Category GO:0071356 cellular response to tumor necrosis factor Database 0.03
Category members GO Category GO:0000122 negative regulation of transcription from RNA polymerase II promoter Database 0.02
Category members GO Category GO:0003714 transcription corepressor activity Database 0
Category members GO Category GO:0006355 regulation of transcription, DNA-dependent Database 0
Category members GO Category GO:0007283 spermatogenesis Database 0
Category members GO Category GO:0008584 male gonad development Database 0
Category members GO Category GO:0009409 response to cold Database 0
Category members GO Category GO:0009566 fertilization Database 0
Category members GO Category GO:0046622 positive regulation of organ growth Database 0
Category members GO Category GO:0048642 negative regulation of skeletal muscle tissue development Database 0
Category members GO Category GO:0060547 negative regulation of necrotic cell death Database 0
Category members GO Category GO:0070935 3'-UTR-mediated mRNA stabilization Database 0


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