RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
YBX2	2	0.320	-0.460		0.674	0.402	-1.244	-0.405
H2AFX	2			-0.474	-0.395	0.182	0.824	0.499
H2AFX	2
HSPA5	1	-0.670	0.310	-0.181	-0.208	0.339	-0.702	-0.192
HIST4H4	1	-2.130	2.930	-0.460	0.103	0.645
NPM1	1	1.010	-0.750	0.063	-0.066	-0.259
HIST3H2BB	1
HIST1H4C	0	0.580	-0.800	-0.460	0.103	0.645
HIST1H4H	0	-0.190	-0.080	-0.460	0.103	0.645
HIST1H4J	0			-0.460	0.103	0.645
PTCD3	0	0.250	-0.690	0.583	0.046	0.299	0.113	0.535
CALR	0	-1.300	2.220				0.480	0.054

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CALR	Ubiquitylation	K48		0.703	_SDFGK(gl)FVLSSGK_
CALR	Ubiquitylation	K153	-0.924	0.619	_GK(gl)NVLINK_
CALR	Ubiquitylation	K159	-1.004	0.381	_NVLINK(gl)DIR_
H2AFX	Ubiquitylation	K116	-0.071		_ATIAGGGVIPHIHK(gl)SLIGK_
H2AFX	Ubiquitylation	K120	0.702	0.181	_K(gl)TSATVGPK_
H2AFX	Ubiquitylation	K121	1.548	0.818	_SLIGK(gl)K(gl)GQQK_
H2AFX	Ubiquitylation	K122	1.238	-0.400	_SLIGK(gl)K(gl)GQQK_
H2AFX	Ubiquitylation	K126	1.132		_KGQQK(gl)TV_
H2AFX	Ubiquitylation	K128	-0.411	0.117	_KTSATVGPK(gl)APSGGKK_
H2AFX	Phosphorylation	S140	1.817	1.205	_KATQAS(ph)QEY_
HIST1H4C	Ubiquitylation	K32	0.024	-0.089	_VLRDNIQGITK(gl)PAIR_
HIST1H4C	Phosphorylation	S48	0.771	1.152	_RIS(ph)GLIYEETR_
HIST1H4C	Ubiquitylation	K78	0.044	-0.754	_DAVTYTEHAK(gl)R_
HIST1H4C	Ubiquitylation	K80	0.178		_DAVTYTEHAKRK(gl)_
HIST1H4C	Ubiquitylation	K92	0.432		_TVTAMDVVYALK(gl)R_
HIST1H4H	Ubiquitylation	K32	0.024	-0.089	_VLRDNIQGITK(gl)PAIR_
HIST1H4H	Phosphorylation	S48	0.771	1.152	_RIS(ph)GLIYEETR_
HIST1H4H	Ubiquitylation	K78	0.044	-0.754	_DAVTYTEHAK(gl)R_
HIST1H4H	Ubiquitylation	K80	0.178		_DAVTYTEHAKRK(gl)_
HIST1H4H	Ubiquitylation	K92	0.432		_TVTAMDVVYALK(gl)R_
HIST1H4J	Ubiquitylation	K32	0.024	-0.089	_VLRDNIQGITK(gl)PAIR_
HIST1H4J	Phosphorylation	S48	0.771	1.152	_RIS(ph)GLIYEETR_
HIST1H4J	Ubiquitylation	K78	0.044	-0.754	_DAVTYTEHAK(gl)R_
HIST1H4J	Ubiquitylation	K80	0.178		_DAVTYTEHAKRK(gl)_
HIST1H4J	Ubiquitylation	K92	0.432		_TVTAMDVVYALK(gl)R_
HIST3H2BB	Ubiquitylation	K6	-0.872	-0.694	_PDPSK(gl)SAPAPK_
HIST4H4	Ubiquitylation	K32	0.024	-0.089	_VLRDNIQGITK(gl)PAIR_
HIST4H4	Phosphorylation	S48	0.771	1.152	_RIS(ph)GLIYEETR_
HIST4H4	Ubiquitylation	K78	0.044	-0.754	_DAVTYTEHAK(gl)R_
HIST4H4	Ubiquitylation	K80	0.178		_DAVTYTEHAKRK(gl)_
HIST4H4	Ubiquitylation	K92	0.432		_TVTAMDVVYALK(gl)R_
HSPA5	Ubiquitylation	K81		-0.455	_LIGDAAK(gl)NQLTSNPENTVFDAK(gl)R_
HSPA5	Ubiquitylation	K96	-0.392	-0.109	_NQLTSNPENTVFDAK(gl)R_
HSPA5	Ubiquitylation	K118		0.783	_FLPFK(gl)VVEK_
HSPA5	Ubiquitylation	K340		0.743	_STMK(gl)PVQK_
HSPA5	Ubiquitylation	K352	-0.469	0.822	_VLEDSDLK(gl)K_
HSPA5	Ubiquitylation	K353	-0.469		_VLEDSDLK(gl)K_
HSPA5	Ubiquitylation	K447		3.097	_NTVVPTKK(gl)_
HSPA5	Ubiquitylation	K523	-0.120	0.631	_NK(gl)ITITNDQNR_
NPM1	Phosphorylation	S4	-0.102	0.205	_(ac)MEDS(ph)MDMDMSPLRPQNYLFGCELK_
NPM1	Phosphorylation	S10	0.493	0.606	_(ac)MEDSMDM(ox)DM(ox)S(ph)PLRPQNYLFGCELK_
NPM1	Phosphorylation	Y67	0.604	0.383	_TVSLGAGAKDELHIVEAEAMNY(ph)EGSPIKVTLATLK_
NPM1	Phosphorylation	S70	0.285	0.333	_TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIK_
NPM1	Phosphorylation	T75	0.611	0.229	_DELHIVEAEAMNYEGSPIKVT(ph)LATLK_
NPM1	Phosphorylation	T78		0.397	_TVSLGAGAKDELHIVEAEAMNYEGSPIKVTLAT(ph)LK_
NPM1	Phosphorylation	S125	0.202	0.017	_CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK_
NPM1	Phosphorylation	S139		-0.611	_LLSIS(ph)GKR_
NPM1	Ubiquitylation	K141	0.568	1.699	_LLSISGK(gl)R_
NPM1	Ubiquitylation	K150	-1.308	0.669	_SAPGGGSK(gl)VPQKK_
NPM1	Ubiquitylation	K202	0.335	0.204	_SIRDTPAK(gl)NAQK_
NPM1	Phosphorylation	S227		0.788	_SKGQES(ph)FKK_
NPM1	Phosphorylation	S243	-0.070	0.063	_GPSS(ph)VEDIK_
NPM1	Ubiquitylation	K248	0.294	1.847	_GPSSVEDIK(gl)AK_
NPM1	Ubiquitylation	K250	0.931	1.267	_AK(gl)MQASIEK_
NPM1	Phosphorylation	S254	-0.677	0.371	_MQAS(ph)IEK_
NPM1	Ubiquitylation	K257	0.236	0.753	_MQASIEK(gl)GGSLPK_
NPM1	Phosphorylation	S260	-0.202	0.203	_GGS(ph)LPKVEAK_
NPM1	Ubiquitylation	K267	0.954	1.794	_VEAK(gl)FINYVK_
YBX2	Phosphorylation	S34	-1.234	-1.488	_S(ph)PVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEK_
YBX2	Phosphorylation	S79		-2.262	_SPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGS(ph)EDAEKK_
YBX2	Ubiquitylation	K90	3.724	2.851	_VLATK(gl)VLGTVK_
YBX2	Ubiquitylation	K96	5.830	4.056	_VLGTVK(gl)WFNVR_
YBX2	Ubiquitylation	K113	1.472	1.136	_NDTK(gl)EDVFVHQTAIK_
YBX2	Ubiquitylation	K124	-0.184	0.337	_NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX2	Ubiquitylation	K125	-0.123	0.220	_NDTKEDVFVHQTAIK(gl)K(gl)NNPR_
YBX2	Phosphorylation	S203	-0.609	-0.604	_NYAGEEEEEGSGS(ph)SEGFDPPATDR_
YBX2	Ubiquitylation	K268	-0.103	-0.702	_IQAGEIGEMK(gl)DGVPEGAQLQGPVHR_
YBX2	Phosphorylation	S324	-1.327	-0.720	_PAPAVGEAEDKENQQATSGPNQPS(ph)VR_