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Query: HDLBP

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
HDLBP 0 0.437 -0.130 0.010 -0.328 -0.576 -1.371 -0.034
HDLBP 0 0.437 -0.130 0.010 0.802 -0.874 -0.314

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
HDLBP Ubiquitylation K494 0.899 _IEGDPQGVQQAK(gl)R_
HDLBP Phosphorylation S31 0.021 0.223 _VATLNS(ph)EEESDPPTYK_
HDLBP Ubiquitylation K991 0.294 _YVIGQK(gl)GSGIRK_

Background Information for HDLBP:


Pubmed-HDLBP »
Uniprot-HDLBP »
Biogrid-HDLBP »
ProteomicsDB-HDLBP »

Tumorportal-HDLBP »
COSMIC-HDLBP »
GenomeRNAi-HDLBP »
Genecards-HDLBP


Protein-protein Interactions for HDLBP
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait B4GALT1 Cat. description Hein, Mann, Cell 2015
Category members IP bait CDCA8 Cat. description Hein, Mann, Cell 2015
Category members IP bait FGFR1 Cat. description Hein, Mann, Cell 2015
Category members IP bait KIF11 Cat. description Hein, Mann, Cell 2015
Category members IP bait MLH1 Cat. description Hein, Mann, Cell 2015
Category members IP bait RAB11FIP1 Cat. description Hein, Mann, Cell 2015
Category members IP bait CCDC102B Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CYP1A1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FAM46A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FGB Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GTF2E2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HDHD2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HSPA8 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait IL20RA Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SERPINB2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SNRNP27 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SYNCRIP Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TMEM171 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait USP47 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait WDR59 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in HDLBP
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members KH_dom IPR004087 0.23
Category members KH_dom_type_1 IPR004088 0.13


Protein complexes (CORUM database) featuring HDLBP
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 3102 DHX9-ADAR-vigilin-DNA-PK-Ku antigen complex Database 0.44
Category members Corum 1571 Vigilin-DNA-PK-Ku antigen complex Database 0.31


Categories featuring HDLBP
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0003723 RNA binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0005886 plasma membrane Database 1.21
Category members GO Category GO:0008203 cholesterol metabolic process Database 0.08
Category members GO Category GO:0006869 lipid transport Database 0
Category members GO Category GO:0008289 lipid binding Database 0
Category members GO Category GO:0034364 high-density lipoprotein particle Database 0


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