RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PDIA3	2	-2.160	3.830	0.411	2.714	-0.864	0.952	0.794
PDIA3	2	-2.160	3.830	0.189	2.142	-1.800
USP13	1	0.350	0.240	-1.142				0.643
USP13	1	0.350	0.240
USP5	1	0.450	-0.520	-1.142				0.643
CASP8	1	1.120	-1.090
USP14	1	-0.120	1.090	-0.442			3.486
USP14	1	-0.120	1.090
BLMH	1	0.710	-0.440				1.895	-1.446
USP1	1	2.430	-1.190
USP33	0	0.750	-0.150
LGMN	0	-0.120	0.250				0.435	0.710
USP11	0	0.840	-0.200	-0.333	0.001	0.704
USP10	0	-0.120	-0.210	0.958	0.948	0.289	-0.190	-0.313
CASP14	0	0.690	0.120					-4.487
CASP2	0	0.980	-1.120
USP34	0	-0.770	0.520
USP9X	0	-0.520	0.800	-0.309	0.196	0.205	-0.019	0.128
ATG4C	0	1.830	-1.180
ATG4D	0	-1.190	1.270
USP15	0	1.570	-0.780
USP15	0	1.570	-0.780	0.925	-0.319	-0.221
USP20	0	-0.010	-0.210
USP8	0	0.830	-0.320
PIGK	0	-1.290	1.770				0.701	0.445
USP12	0	-1.250	1.890
UCHL1	0	-0.500	0.500				1.153	-0.238
UCHL1	0	-0.500	0.500	0.687
USP16	0	-0.680	1.390
CASP3	0	0.570	-0.390
CASP7	0	0.130	-0.130
USP7	0	-0.600	0.590
USP7	0	-0.600	0.590	0.789	-0.077	0.319	-0.125	0.108

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATG4C	Ubiquitylation	K403	0.208		_ASEEITK(gl)MLK_
ATG4D	Ubiquitylation	K241		-0.390	_LVELGQSSGK(gl)K_
ATG4D	Ubiquitylation	K242		-0.390	_LVELGQSSGK(gl)K_
ATG4D	Phosphorylation	S468	0.073	0.285	_AKRPSS(ph)EDFVFL_
CASP2	Phosphorylation	S340	-0.347	-1.529	_NHAGS(ph)PGCEESDAGKEK_
CASP3	Ubiquitylation	K11	-0.053	-0.687	_(ac)MENTENSVDSK(gl)SIK_
CASP3	Ubiquitylation	K14	-0.455	-0.687	_SIK(gl)NLEPK_
CASP3	Ubiquitylation	K57	-0.304	-1.817	_NFHK(gl)STGMTSR_
CASP3	Ubiquitylation	K82	-0.268	-0.605	_NLK(gl)YEVR_
CASP7	Phosphorylation	S16	0.096	-0.112	_(ac)ADDQGCIEEQGVEDS(ph)ANEDSVDAKPDR_
CASP7	Ubiquitylation	K80	0.580	-0.044	_NFDK(gl)VTGMGVR_
CASP8	Ubiquitylation	K183	1.917		_IINDYEEFSK(gl)ER_
CASP8	Ubiquitylation	K461		-2.031	_NMGK(gl)QMPQPTFTLR_
LGMN	Ubiquitylation	K125	0.264	-0.241	_GDAEAVK(gl)GIGSGK_
LGMN	Ubiquitylation	K224	0.675	0.933	_ESSYACYYDEK(gl)R_
LGMN	Ubiquitylation	K287		1.040	_VMQFQGMK(gl)R_
PDIA3	Ubiquitylation	K75		-0.105	_LK(gl)GIVPLAK_
PDIA3	Ubiquitylation	K94	-0.012	0.658	_VDCTANTNTCNK(gl)YGVSGYPTLK_
PDIA3	Ubiquitylation	K130		0.775	_TADGIVSHLKK(gl)_
PDIA3	Ubiquitylation	K226	-0.163	0.525	_TVAYTEQK(gl)MTSGK_
PDIA3	Ubiquitylation	K362	-0.242		_FLQDYFDGNLK(gl)R_
PIGK	Ubiquitylation	K360		-0.653	_YAEQLPVAQIIHQKPK(gl)_
UCHL1	Ubiquitylation	K4	-0.164	-0.657	_MQLK(gl)PMEINPEMLNK_
UCHL1	Ubiquitylation	K65	-0.004	-0.789	_K(gl)QIEELKGQEVSPK_
UCHL1	Ubiquitylation	K71	-0.121	-0.325	_QIEELK(gl)GQEVSPK_
UCHL1	Ubiquitylation	K78	-0.595		_QIEELKGQEVSPK(gl)VYFMK_
UCHL1	Ubiquitylation	K123	-0.013	-0.297	_QFLSETEK(gl)M(ox)SPEDR_
UCHL1	Ubiquitylation	K135	-0.048		_CFEK(gl)NEAIQAAHDAVAQEGQCR_
UCHL1	Ubiquitylation	K195	-0.285	-0.704	_MPFPVNHGASSEDTLLK(gl)DAAK_
UCHL1	Ubiquitylation	K221	-0.155	-0.216	_FSAVALCK(gl)AA_
USP1	Phosphorylation	S42	1.055		_ALDFTDS(ph)QENEEK_
USP1	Phosphorylation	S66		0.045	_ASEIDQVVPAAQS(ph)SPINCEK_
USP1	Phosphorylation	S67	-0.170	0.304	_ASEIDQVVPAAQSS(ph)PINCEK_
USP1	Phosphorylation	S475	-1.080	-0.086	_REDFQDISVPVQEDELSKVEESSEIS(ph)PEPK_
USP1	Ubiquitylation	K689	0.173	-1.509	_ASNPDK(gl)VASTAFAENR_
USP10	Phosphorylation	S76	0.220		_TPS(ph)YSISSTLNPQAPEFILGCTASK_
USP10	Phosphorylation	T208	-0.556	-0.706	_T(ph)CNSPQNSTDSVSDIVPDSPFPGALGSDTR_
USP10	Phosphorylation	S211		-0.454	_TCNS(ph)PQNSTDSVSDIVPDSPFPGALGSDTR_
USP10	Phosphorylation	S365	-0.539	-0.580	_YS(ph)PPAISPLVSEK_
USP10	Phosphorylation	S370	0.978	0.859	_YSPPAIS(ph)PLVSEK_
USP10	Ubiquitylation	K512	0.652		_LLTVNK(gl)SSLSEK_
USP10	Phosphorylation	S547	0.647	0.385	_LLS(ph)PSNEK_
USP10	Phosphorylation	S576	1.011	0.498	_NHSVNEEEQEEQGEGS(ph)EDEWEQVGPR_
USP10	Ubiquitylation	K662		-0.003	_ESVQGYTTK(gl)TK_
USP10	Ubiquitylation	K664	1.358		_TK(gl)QEVEISR_
USP10	Ubiquitylation	K780	0.763	0.364	_VINQYQVVK(gl)PTAER_
USP11	Ubiquitylation	K245	-0.175	-0.284	_LWAK(gl)NSEGSLDR_
USP11	Ubiquitylation	K385	-0.348		_SIVPHVFKNK(gl)_
USP11	Phosphorylation	S733	0.908	0.540	_TTS(ph)PEEVHAQPYIAIDWEPEMK_
USP11	Ubiquitylation	K776	-0.145	0.017	_HDCVGYVM(ox)KK(gl)_
USP11	Ubiquitylation	K835	0.273	0.465	_FSYTK(gl)FSR_
USP12	Ubiquitylation	K273	0.375	0.547	_YTK(gl)LSYR_
USP13	Ubiquitylation	K163	0.116	1.146	_K(gl)QEVQAWDGEVR_
USP13	Ubiquitylation	K184	-0.042	-0.044	_HAFSLK(gl)QLDNPAR_
USP13	Ubiquitylation	K328	0.320	0.109	_LK(gl)PMYGPGYTGLK_
USP13	Ubiquitylation	K353	1.225		_K(gl)YVDKLEK_
USP13	Ubiquitylation	K357	0.847		_YVDK(gl)LEK_
USP13	Ubiquitylation	K418	0.291	0.339	_MFK(gl)ALIGK_
USP13	Ubiquitylation	K423	0.440	-0.090	_ALIGK(gl)GHPEFSTNR_
USP13	Ubiquitylation	K430	0.505	0.308	_MFK(gl)AFVSK_
USP13	Ubiquitylation	K435	-0.932	-0.715	_AFVSK(gl)SHPEFSSNR_
USP13	Ubiquitylation	K468	0.433		_FLVEEK(gl)IK_
USP13	Ubiquitylation	K470	-0.606	0.287	_IK(gl)CLATEK_
USP13	Ubiquitylation	K478	0.243	0.990	_CLATEKVK(gl)_
USP13	Ubiquitylation	K558	0.626	0.552	_SVAVK(gl)TTR_
USP13	Phosphorylation	T623	1.685	0.623	_GTGLQPGEEELPDIAPPLVT(ph)PDEPK_
USP13	Ubiquitylation	K743	0.438	1.356	_DQALK(gl)ALR_
USP13	Ubiquitylation	K793	-0.216	0.033	_SAADSISESVPVGPK(gl)VR_
USP14	Ubiquitylation	K54	-0.506	0.880	_GGTLK(gl)DDDWGNIK_
USP14	Ubiquitylation	K62	-1.110	0.317	_GGTLKDDDWGNIK(gl)IK_
USP14	Ubiquitylation	K130	-0.994	-0.631	_SVPELK(gl)DALKR_
USP14	Ubiquitylation	K134		-0.783	_SVPELKDALK(gl)R_
USP14	Phosphorylation	S143	0.551	0.678	_AS(ph)GEM(ox)ASAQYITAALR_
USP14	Ubiquitylation	K224	-1.522	-1.122	_LEAIEDDSVK(gl)ETDSSSASAATPSK_
USP14	Ubiquitylation	K239	-0.850		_LEAIEDDSVKETDSSSASAATPSKK(gl)_
USP14	Ubiquitylation	K291	-0.258	-0.581	_YLFTGLK(gl)_
USP14	Ubiquitylation	K300	-0.534	-1.071	_LQEEITK(gl)QSPTLQR_
USP14	Ubiquitylation	K313	-0.672	-0.343	_NALYIK(gl)SSK_
USP14	Ubiquitylation	K336	1.000		_FFYK(gl)EKESVNAK_
USP14	Ubiquitylation	K342	-0.361		_ESVNAK(gl)VLK_
USP14	Phosphorylation	S389	-0.018		_VNQQPNTS(ph)DKKSSPQK_
USP14	Phosphorylation	S394		0.259	_VNQQPNTSDKKSS(ph)PQK_
USP14	Ubiquitylation	K441	0.293	-0.492	_SSSSGHYVSWVK(gl)R_
USP15	Phosphorylation	S225	-0.837		_GPS(ph)TPKKPLEQSC_
USP15	Phosphorylation	T226	-1.049	-0.318	_GPST(ph)PKKPLEQSC_
USP15	Phosphorylation	S229	0.423	0.578	_S(ph)PGASNFSTLPK_
USP16	Ubiquitylation	K37	-0.731	0.604	_GLEQGNLK(gl)K_
USP16	Phosphorylation	S415	0.456	0.759	_TVEDEDQDS(ph)EEEKDNDSYIK_
USP16	Ubiquitylation	K437	0.171	0.056	_SDIPSGTSK(gl)HLQK_
USP16	Phosphorylation	S551		0.904	_NINMDNDLEVLTS(ph)SPTR_
USP16	Phosphorylation	S552	0.397	0.707	_NINM(ox)DNDLEVLTSS(ph)PTR_
USP16	Phosphorylation	T554		1.067	_NINMDNDLEVLTSSPT(ph)R_
USP16	Ubiquitylation	K764	0.748	-1.310	_SGHYTAYAK(gl)AR_
USP20	Phosphorylation	S132	-0.292	-0.107	_AVPIAVADEGES(ph)ESEDDDLKPR_
USP20	Phosphorylation	S134	-0.317	-0.295	_AVPIAVADEGESES(ph)EDDDLKPR_
USP20	Phosphorylation	S305	0.041	1.231	_GGGSS(ph)QAETELLIPDEAGR_
USP33	Ubiquitylation	K371		-0.567	_MCNK(gl)INK_
USP33	Ubiquitylation	K882	-0.583	0.278	_IAVTK(gl)CGNVMLR_
USP34	Ubiquitylation	K1564		-0.718	_TWPGK(gl)SR_
USP34	Ubiquitylation	K1968	-0.136	-0.001	_TYTMDK(gl)QPLNTGEQK_
USP34	Ubiquitylation	K2100	0.809	1.208	_YTFNMVTMMK(gl)EK_
USP34	Ubiquitylation	K2102	0.830	0.927	_YTFNMVTMMK(gl)EK_
USP34	Ubiquitylation	K3100	-0.232	0.525	_ENIK(gl)LIGGK_
USP34	Phosphorylation	S3406	-0.618	-0.249	_DSSIIDPGTEQDLPS(ph)PENSSVK_
USP5	Ubiquitylation	K163	0.116	1.146	_K(gl)QEVQAWDGEVR_
USP5	Ubiquitylation	K184	-0.042	-0.044	_HAFSLK(gl)QLDNPAR_
USP5	Ubiquitylation	K353	1.225		_K(gl)YVDKLEK_
USP5	Ubiquitylation	K357	0.847		_YVDK(gl)LEK_
USP5	Ubiquitylation	K418	0.291	0.339	_MFK(gl)ALIGK_
USP5	Ubiquitylation	K423	0.440	-0.090	_ALIGK(gl)GHPEFSTNR_
USP5	Ubiquitylation	K468	0.433		_FLVEEK(gl)IK_
USP5	Ubiquitylation	K470	-0.606	0.287	_IK(gl)CLATEK_
USP5	Ubiquitylation	K478	0.243	0.990	_CLATEKVK(gl)_
USP5	Ubiquitylation	K558	0.626	0.552	_SVAVK(gl)TTR_
USP5	Phosphorylation	T623	1.685	0.623	_GTGLQPGEEELPDIAPPLVT(ph)PDEPK_
USP5	Ubiquitylation	K743	0.438	1.356	_DQALK(gl)ALR_
USP5	Ubiquitylation	K793	-0.216	0.033	_SAADSISESVPVGPK(gl)VR_
USP7	Phosphorylation	S18	-0.616	-0.581	_AGEQQLS(ph)EPEDM(ox)EM(ox)EAGDTDDPPR_
USP7	Ubiquitylation	K158	-0.447	0.111	_IINYRDDEK(gl)SFSR_
USP7	Ubiquitylation	K264	-1.350		_AVYMMPTEGDDSSK(gl)SVPLALQR_
USP7	Ubiquitylation	K430	0.500		_FMYDPQTDQNIK(gl)INDR_
USP7	Ubiquitylation	K605		1.273	_YTVFK(gl)VLK_
USP7	Ubiquitylation	K834	-0.068	0.064	_MNYFQVAK(gl)TVAQR_
USP7	Ubiquitylation	K879	-0.271		_DLLQFFK(gl)PR_
USP7	Ubiquitylation	K892	0.402	0.347	_KLYYQQLK(gl)MK_
USP7	Ubiquitylation	K894	0.380		_MK(gl)ITDFENRR_
USP7	Ubiquitylation	K944	0.512	0.702	_KAVELGEK(gl)ASGK_
USP7	Ubiquitylation	K1106	0.275	0.509	_YTYLEK(gl)AIK_
USP8	Phosphorylation	S392	-0.015	0.284	_SDVS(ph)PIIQPVPSIK_
USP8	Phosphorylation	T577	-0.048	0.069	_RCPT(ph)PEIQKK_
USP8	Phosphorylation	S716	0.750	0.023	_S(ph)YSSPDITQAIQEEEKR_
USP8	Phosphorylation	S718	0.338	0.273	_SYS(ph)SPDITQAIQEEEKR_
USP9X	Ubiquitylation	K112	0.155	0.666	_GLDVK(gl)SEACQR_
USP9X	Ubiquitylation	K315		1.100	_SLK(gl)NLASR_
USP9X	Ubiquitylation	K1045		0.212	_VLMK(gl)LMPPDSTTIEK_
USP9X	Ubiquitylation	K1445	-1.104	-0.276	_ELLAFQTSEK(gl)K_
USP9X	Ubiquitylation	K1446	-1.104	0.061	_ELLAFQTSEKK(gl)_
USP9X	Ubiquitylation	K1627	-1.695		_DDVFGYPQQFEDK(gl)PALSK_
USP9X	Ubiquitylation	K1637	-0.957		_TEDRK(gl)EYNIGVLR_
USP9X	Ubiquitylation	K1798		-1.085	_LPPVLAIQLK(gl)R_
USP9X	Ubiquitylation	K2301	0.210	0.500	_IIEDCSNSEETVK(gl)LLR_
USP9X	Ubiquitylation	K2480	-0.335		_ACELCPEEVKK(gl)_
USP9X	Phosphorylation	S2563	-0.389	-0.274	_AQENYEGSEEVS(ph)PPQTK_