RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
FOXC1	1	-2.160	3.640	-1.217	-0.424	0.659
JMJD6	1	-2.420	4.570
PKD1	0	-0.900	0.980
MEF2A	0	0.820	-0.530
MEF2A	0	0.820	-0.530
PSEN1	0	0.930	-1.110
MEF2C	0	-0.980	1.550
MEF2C	0	-0.980	1.550
CRKL	0	0.290	-0.620
HIF1A	0	-0.480	0.400
MIB1	0	0.710	-1.060					0.258
AHR	0	-1.080	1.020
RAPGEF1	0	1.620	-0.780
RAPGEF2	0	-0.860	1.560
ALDH1A2	0	-1.010	0.740
TBX3	0	-0.160	0.160
ITGAV	0			-0.297			-0.090	0.262
EPHA2	0	1.330	-0.460					0.221
TCF7L2	0	-0.550	0.790	-0.741
PPAP2B	0	-0.750	0.840
FLVCR1	0	1.260	-0.470
FLVCR1	0	1.260	-0.470
ATP7A	0	-0.210	0.370
GATAD2A	0	0.970	-0.980	-0.231	0.039	0.770	-0.463	-0.544
CHD7	0	0.220	-0.050	-1.168			0.026	0.297
EGFL7	0	-1.200	1.990
DHCR7	0			-0.384			0.267	0.288
FOXG1	0	-0.510	1.000	-1.217	-0.424	0.659
FOXG1	0	0.550	-0.250	-1.217	-0.424	0.659

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AHR	Ubiquitylation	K641		-1.506	_QVVVEPQQQLCQK(gl)MK_
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
ATP7A	Ubiquitylation	K333	0.029		_K(gl)AIEAVSPGLYR_
CHD7	Phosphorylation	S557		-0.452	_VPVHQHS(ph)PSEPFLEKPVPDM(ox)TQVSGPNAQLVK_
CHD7	Phosphorylation	S1874	-0.088	-0.155	_TPFKDEIDEFANS(ph)PSEDKEESMEIHATGK_
CHD7	Phosphorylation	S2533		-0.792	_RTS(ph)LSAEDAEVTK_
CHD7	Phosphorylation	S2559	-0.345	-0.513	_NIPS(ph)PGQLDPDTR_
CHD7	Phosphorylation	S2956	0.383	-0.248	_DGETLEGS(ph)DAEESLDK_
CRKL	Phosphorylation	S41		0.868	_DS(ph)STCPGDYVLSVSENSR_
CRKL	Phosphorylation	S107	-0.818	-1.177	_YPS(ph)PPMGSVSAPNLPTAEDNLEYVR_
DHCR7	Ubiquitylation	K4		-0.994	_(ac)AAK(gl)SQPNIPK_
DHCR7	Ubiquitylation	K13	-0.522	0.107	_AK(gl)SLDGVTNDR_
DHCR7	Phosphorylation	S14	0.877	0.606	_S(ph)LDGVTNDR_
DHCR7	Ubiquitylation	K88	-0.930	-0.171	_LSDIWAK(gl)TPPITR_
EGFL7	Ubiquitylation	K93		-1.651	_YACCPGWK(gl)R_
EPHA2	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHA2	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHA2	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHA2	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHA2	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHA2	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
FLVCR1	Ubiquitylation	K33	-0.251	-1.311	_GAPVGK(gl)ESVELQNGPK_
FLVCR1	Phosphorylation	S536	1.258	0.701	_AIPADS(ph)PTDQEPK_
FLVCR1	Ubiquitylation	K543	-0.643		_AIPADSPTDQEPK(gl)TVMLSK_
FLVCR1	Ubiquitylation	K549	0.772	0.078	_TVMLSK(gl)QSESAI_
FOXC1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXC1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXC1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXC1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXC1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
FOXG1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXG1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXG1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXG1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXG1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXG1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXG1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
GATAD2A	Phosphorylation	T68	-0.595		_GLLASDLNTDGDM(ox)RVT(ph)PEPGAGPTQGLLR_
GATAD2A	Phosphorylation	S119	-0.992	-0.978	_RPPS(ph)PDVIVLSDNEQPSSPR_
GATAD2A	Phosphorylation	S132	-0.919		_RPPS(ph)PDVIVLSDNEQPS(ph)SPR_
GATAD2A	Phosphorylation	S133	-0.992		_RPPS(ph)PDVIVLSDNEQPSS(ph)PR_
GATAD2A	Phosphorylation	T194	-0.162	0.323	_EAT(ph)AQKPTGSVGSTVTTPPPLVR_
GATAD2A	Phosphorylation	T208		0.247	_EATAQKPTGSVGSTVTT(ph)PPPLVR_
GATAD2A	Phosphorylation	S359	-1.184	-0.716	_GTTATSAQANSTPTSVASVVTSAES(ph)PASR_
HIF1A	Ubiquitylation	K10		-1.686	_(ac)MEGAGGANDK(gl)K_
HIF1A	Ubiquitylation	K11		-1.686	_(ac)MEGAGGANDK(gl)K_
HIF1A	Ubiquitylation	K173		-0.662	_MK(gl)CTLTSR_
HIF1A	Ubiquitylation	K186		-0.590	_TMNIK(gl)SATWK_
HIF1A	Ubiquitylation	K252		-0.784	_HSLDM(ox)K(gl)FSYCDER_
HIF1A	Ubiquitylation	K371		-0.508	_PVESSDMK(gl)MTQLFTK_
HIF1A	Ubiquitylation	K378		-0.077	_MTQLFTK(gl)VESEDTSSLFDK_
HIF1A	Ubiquitylation	K390		-0.348	_VESEDTSSLFDK(gl)LKK_
HIF1A	Ubiquitylation	K392		-0.546	_VESEDTSSLFDKLK(gl)_
HIF1A	Ubiquitylation	K393		-0.451	_VESEDTSSLFDKLKK(gl)_
HIF1A	Ubiquitylation	K710		-1.696	_TTVPEEELNPK(gl)ILALQNAQR_
ITGAV	Ubiquitylation	K233		0.373	_YDPNVYSIK(gl)YNNQLATR_
ITGAV	Ubiquitylation	K360		0.294	_ASGDFQTTK(gl)LNGFEVFAR_
ITGAV	Ubiquitylation	K923		0.636	_GK(gl)SAILYVK_
JMJD6	Ubiquitylation	K167	-0.059	-0.130	_FFTDDLFQYAGEK(gl)R_
JMJD6	Ubiquitylation	K219		-0.251	_ELIK(gl)VTR_
MEF2A	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2A	Phosphorylation	S235	0.664	-0.092	_AS(ph)PNLIGATGANSLGK_
MEF2A	Phosphorylation	T253		-1.271	_VMPT(ph)KSPPPPGGGNLGMNSR_
MEF2A	Phosphorylation	S255		-1.235	_VMPTKS(ph)PPPPGGGNLGMNSR_
MEF2A	Phosphorylation	S408	-0.173	-0.049	_SEPIS(ph)PPRDR_
MEF2A	Phosphorylation	S494	-0.858	-1.232	_GDFHSPIVLGRPPNTEDRES(ph)PSVK_
MEF2C	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2C	Phosphorylation	S240	0.008	0.302	_NS(ph)PGLLVSPGNLNK_
MEF2C	Phosphorylation	S406	0.272	0.338	_SEPVS(ph)PPRDR_
MIB1	Ubiquitylation	K28	-0.465	-1.379	_WGK(gl)QDGGEGHVGTVR_
MIB1	Ubiquitylation	K222	-0.025	-0.938	_CVQDAK(gl)GGSFYR_
MIB1	Ubiquitylation	K420	-1.942	-2.115	_LSQLLK(gl)K_
MIB1	Ubiquitylation	K421		-1.850	_LSQLLKK(gl)_
MIB1	Ubiquitylation	K485	-1.697		_LLLK(gl)QNVDVEAEDKDGDR_
MIB1	Ubiquitylation	K726	-2.735	-2.946	_QLQDMQDVGK(gl)VDAAWEPSK_
MIB1	Ubiquitylation	K749		-2.124	_NTLIMGLGTQGAEK(gl)K_
MIB1	Ubiquitylation	K750	-2.385	-2.133	_NTLIMGLGTQGAEKK(gl)_
MIB1	Ubiquitylation	K787	-3.370		_KGQSPLDLCPDPNLCK(gl)ALAK_
MIB1	Ubiquitylation	K791	-3.063	-2.513	_GQSPLDLCPDPNLCKALAK(gl)_
MIB1	Ubiquitylation	K796		-3.011	_EK(gl)VSGQVGSR_
MIB1	Ubiquitylation	K854		-0.986	_CLICK(gl)EQVQSR_
MIB1	Ubiquitylation	K872	-2.513	-2.977	_TKIEECVVCSDK(gl)K_
MIB1	Ubiquitylation	K873	-2.513		_IEECVVCSDK(gl)K_
PKD1	Phosphorylation	T867		0.841	_GT(ph)YHVRLEVNNTVSGAAAQADVR_
PPAP2B	Ubiquitylation	K5	0.619	0.462	_(ac)MQNYK(gl)YDK_
PPAP2B	Ubiquitylation	K8	0.265	0.647	_YDK(gl)AIVPESK_
PPAP2B	Ubiquitylation	K15	-0.741	-0.668	_AIVPESK(gl)NGGSPALNNNPR_
PSEN1	Phosphorylation	S313		0.844	_VSKNS(ph)KYNAESTER_
PSEN1	Ubiquitylation	K314	0.016	0.414	_NSK(gl)YNAESTER_
PSEN1	Phosphorylation	S366	-0.340	0.055	_AAVQELSS(ph)SILAGEDPEER_
PSEN1	Phosphorylation	S367	0.005	0.066	_AAVQELSSS(ph)ILAGEDPEER_
RAPGEF1	Phosphorylation	S377		0.629	_LSKS(ph)DEQLSSLDR_
RAPGEF2	Phosphorylation	S1022	0.043	-0.570	_SETS(ph)PVAPR_
RAPGEF2	Phosphorylation	S1080	-0.612		_DLPPFGINS(ph)PQALK_
TBX3	Ubiquitylation	K466	-2.519		_EGTAPAK(gl)VEEAR_
TCF7L2	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_