RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
FOXC1	1	-2.160	3.640	-1.217	-0.424	0.659
MSX2	1	-0.260	0.240
SMO	1	-0.690	1.110		1.532
SP3	1	2.510	-0.930	-0.403			0.807	0.836
GPM6B	0	-0.810	0.230
GPM6B	0	-0.810	0.230
CBFB	0	1.550	-0.600
SUCO	0	-0.620	0.980					0.408
BMP7	0
SMAD5	0	0.640	-0.430
ATP6V1B1	0	1.440	-1.080				-0.526	0.143
TWIST1	0	-0.640	1.150
RUNX2	0
TWSG1	0	0.420	-0.740
MEN1	0	1.080	-1.150	0.101			0.684	-0.063
MEN1	0	1.080	-1.150			0.395
MEN1	0	1.080	-1.150
SORT1	0
OSTF1	0	1.260	-0.960	0.744
CDH11	0	-0.540	0.840
EGFR	0	-0.580	0.520				0.513	0.090
EXT2	0	-1.290	1.340
BMP6	0	1.970	-0.630
PPARGC1B	0	0.740	-0.460
SLC26A2	0	0.790	-0.630
BCL2	0	0.910	-0.740
EIF2AK3	0	0.010	0.340
RPL38	0	-1.010	1.980	1.241	0.265	0.397	-0.650	0.314
FOXG1	0	-0.510	1.000	-1.217	-0.424	0.659
FOXG1	0	0.550	-0.250	-1.217	-0.424	0.659
SP1	0			0.404			0.333	0.650
IFITM1	0	0.560	-0.530
IFITM1	0	1.200	-0.770
PDLIM7	0	0.490	-0.430	-0.704			-0.559	-0.337

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
BMP6	Ubiquitylation	K409		-1.025	_VSSASDYNSSELK(gl)TACR_
BMP7	Ubiquitylation	K178		-0.107	_IYK(gl)DYIR_
CBFB	Ubiquitylation	K28	0.486	0.548	_ECEIK(gl)YTGFR_
CDH11	Ubiquitylation	K367	-0.209		_FISNGPFK(gl)_
EGFR	Phosphorylation	T693	0.486	-0.139	_ELVEPLT(ph)PSGEAPNQALLR_
EGFR	Phosphorylation	S991		-0.041	_MHLPS(ph)PTDSNFYR_
EIF2AK3	Phosphorylation	S715		0.832	_EHIEIIAPS(ph)PQR_
EXT2	Ubiquitylation	K126		0.339	_VYIYALKK(gl)_
EXT2	Ubiquitylation	K181		0.503	_IK(gl)ETAQAMAQLSR_
EXT2	Ubiquitylation	K523		-0.044	_VPLK(gl)VVR_
EXT2	Ubiquitylation	K531		0.165	_TAENK(gl)LSNR_
FOXC1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXC1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXC1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXC1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXC1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
FOXG1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXG1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXG1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXG1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXG1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXG1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXG1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
GPM6B	Ubiquitylation	K264	0.537	1.010	_SREDCCTK(gl)F_
GPM6B	Ubiquitylation	K295	0.448	1.114	_SK(gl)EQLNSYT_
IFITM1	Ubiquitylation	K3	-0.716	-1.338	_M(ox)HK(gl)EEHEVAVLGPPPSTILPR_
MEN1	Ubiquitylation	K8	-1.132	0.088	_AAQK(gl)TLFPLR_
MEN1	Phosphorylation	S218		-0.820	_RES(ph)KPEEPPPPK_
MSX2	Phosphorylation	S3	-1.986	-1.774	_(ac)AS(ph)PSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S5	-1.986		_AS(ph)PS(ph)KGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S63		3.351	_EAS(ph)PLPAESASAGATLRPLLLSGHGAR_
MSX2	Phosphorylation	S91	-0.783	-0.727	_EAHS(ph)PGPLVKPFETASVK_
MSX2	Phosphorylation	S123		-0.062	_SENSEDGAAWMQEPGRYS(ph)PPPR_
PDLIM7	Phosphorylation	S111	-0.573		_YTFAPSVS(ph)LNK_
PPARGC1B	Phosphorylation	S524		0.617	_ELGS(ph)PTDEDSGQDQQLLR_
RPL38	Ubiquitylation	K33	-0.764	0.921	_NKDNVK(gl)FK_
RPL38	Ubiquitylation	K57		-0.484	_LK(gl)QSLPPGLAVK_
RUNX2	Phosphorylation	S96	0.504	-0.399	_RFS(ph)PPSSSLQPGK_
RUNX2	Ubiquitylation	K244	0.258		_NASAVMK(gl)NQVAR_
SLC26A2	Ubiquitylation	K6	0.186	1.199	_(ac)SSESK(gl)EQHNVSPR_
SMAD5	Ubiquitylation	K64	-2.082	-1.647	_ALSSPGQPSK(gl)CVTIPR_
SORT1	Ubiquitylation	K294		-0.104	_TSDLGK(gl)SFK_
SORT1	Ubiquitylation	K388	-2.073	-0.343	_GIVYSK(gl)SLDR_
SP1	Phosphorylation	S2	0.834	1.114	_(ac)S(ph)DQDHSMDEMTAVVK_
SP1	Phosphorylation	S7	0.586	0.217	_(ac)SDQDHS(ph)MDEMTAVVK_
SP1	Phosphorylation	S56	-0.154		_SSSTGSSSSTGGGGQES(ph)QPSPLALLAATCSR_
SP1	Phosphorylation	S59	-0.217	-0.135	_SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR_
SUCO	Phosphorylation	S1233	1.063	0.911	_SKS(ph)LQLTGK_
TWIST1	Ubiquitylation	K150		-0.176	_IQTLK(gl)LAAR_
TWSG1	Ubiquitylation	K192		1.435	_ISCESMGASK(gl)YR_