RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
FYN	1	1.080	-1.100
FYN	1	1.080	-1.100
PIK3R2	1	2.740	-1.180				0.269	0.348
PLCG1	1	-0.170	0.000
RAC2	1	-1.520	2.710	0.486			-0.364	-0.568
RAF1	1	2.020	-1.230
KRAS	1	-0.510	0.620				1.031	0.887
KRAS	1	-0.510	0.620				0.246	-0.346
IFNAR1	1	-1.770	3.060
MAP2K1	1	-1.590	2.780
HLA-B	1	0.000	-0.310				0.604	0.718
HLA-B	1	0.000	-0.310				-0.626
HLA-B	1	0.000	-0.310				1.149
HLA-B	1	0.000	-0.310
NRAS	1	1.810	-0.720				0.246	-0.346
HLA-B	1	0.000	-0.310
FAS	0	1.380	-1.070
FAS	0	1.380	-1.070
IFNGR1	0	-1.300	2.410
PIK3CB	0	-1.390	2.350
PIK3CB	0	-0.710	1.450
ARAF	0	0.550	-0.670
ARAF	0	0.550	-0.670
NFATC4	0	0.060	0.210
NFATC2	0	-0.090	0.320
MAPK3	0
NFAT5	0	0.240	-0.760
PPP3CB	0	-1.240	2.140		-0.298	1.130
PPP3CB	0	-1.240	2.140				0.923	0.537
SOS1	0	0.500	-0.620	-0.570
PIK3R3	0	-0.140	-0.480
PIK3R3	0	-0.140	-0.480				-0.441	0.147
TNFRSF10B	0	-0.030	-0.780
PPP3CC	0	-0.380	1.050		-0.298	1.130
PPP3CC	0	-0.380	1.050				0.923	0.537
PIK3CA	0
MAP2K2	0	-0.610	0.080
MAP2K2	0	-0.610	0.080
RAC1	0	-0.580	1.580	0.486			-0.364	-0.568
PPP3CA	0	1.550	-1.230		-0.298	1.130
PPP3CA	0	1.550	-1.230				0.923	0.537
PIK3R1	0	1.910	-1.220				-0.441	0.147
PAK1	0	1.190	-0.630
PRKCA	0	0.750	-0.690				0.349	0.585
PRKCA	0	0.750	-0.690
BRAF	0
IFNAR2	0	0.700	-0.450
CASP3	0	0.570	-0.390
PRKCB	0	0.260	-0.530
PRKCB	0	0.260	-0.530				0.349	0.585
RAC3	0	0.210	0.290
HRAS	0	1.470	-0.520
GRB2	0	-0.240	0.300		-1.021	0.057	0.906
PTPN11	0	-0.210	-0.400	0.644			1.053	0.451
LCK	0	-0.490	1.390				0.295	0.576
MICA	0
MICB	0	1.050	-0.290
HLA-C	0						0.604	0.718
HLA-C	0
HLA-C	0
HLA-E	0	1.660	-0.940
HLA-A	0	0.790	-0.840				-0.626
HLA-C	0						-0.626
HLA-F	0	0.020	-0.190				-0.626
HLA-G	0	0.000	0.140				-0.626
HLA-A	0	0.790	-0.840				1.149
HLA-C	0						1.149
HLA-A	0	0.790	-0.840

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARAF	Phosphorylation	T227		0.017	_STSTPNVHMVSTT(ph)APMDSNLIQLTGQSFSTDAAGSR_
ARAF	Phosphorylation	S260	0.245		_GS(ph)PSPASVSSGR_
ARAF	Ubiquitylation	K543	-1.068	-0.962	_ISSNCPK(gl)AMR_
ARAF	Phosphorylation	S621	0.212	0.271	_SAS(ph)EPSLHR_
BRAF	Phosphorylation	S151	-0.685	-0.629	_SNPKS(ph)PQKPIVR_
BRAF	Phosphorylation	S363	-0.023	-0.241	_S(ph)SSAPNVHINTIEPVNIDDLIR_
BRAF	Phosphorylation	S365	-0.286	0.012	_SSS(ph)APNVHINTIEPVNIDDLIR_
BRAF	Phosphorylation	S399	-0.890	-0.527	_GDGGSTTGLS(ph)ATPPASLPGSLTNVK_
BRAF	Phosphorylation	T401	-0.525		_GDGGSTTGLSAT(ph)PPASLPGSLTNVK_
BRAF	Phosphorylation	S446	0.246	0.349	_RDS(ph)SDDWEIPDGQITVGQR_
BRAF	Phosphorylation	S447	0.579	0.623	_RDSS(ph)DDWEIPDGQITVGQR_
BRAF	Phosphorylation	S729	0.208	0.219	_SAS(ph)EPSLNR_
CASP3	Ubiquitylation	K11	-0.053	-0.687	_(ac)MENTENSVDSK(gl)SIK_
CASP3	Ubiquitylation	K14	-0.455	-0.687	_SIK(gl)NLEPK_
CASP3	Ubiquitylation	K57	-0.304	-1.817	_NFHK(gl)STGMTSR_
CASP3	Ubiquitylation	K82	-0.268	-0.605	_NLK(gl)YEVR_
FAS	Phosphorylation	S236	-0.027		_ENQGS(ph)HESPTLNPETVAINLSDVDLSK_
FAS	Phosphorylation	S239	0.266		_ENQGSHES(ph)PTLNPETVAINLSDVDLSK_
FAS	Ubiquitylation	K343	1.126		_IQTIILK(gl)DITSDSENSNFR_
FYN	Ubiquitylation	K13	0.286		_DKEATK(gl)LTEER_
FYN	Phosphorylation	S21	0.373	0.731	_DGS(ph)LNQSSGYR_
FYN	Ubiquitylation	K259		0.921	_LTDLSVK(gl)TK_
FYN	Ubiquitylation	K261	0.099		_LTDLSVKTK(gl)_
FYN	Ubiquitylation	K273	6.025		_SLCLEKK(gl)_
FYN	Ubiquitylation	K275	-0.521		_ESLQLIK(gl)R_
GRB2	Ubiquitylation	K10	0.146		_YDFK(gl)ATADDELSFK_
GRB2	Ubiquitylation	K20	-0.078		_ATADDELSFK(gl)R_
GRB2	Ubiquitylation	K69	-0.362	0.641	_AK(gl)AEEMLSK_
GRB2	Ubiquitylation	K76	0.754		_AEEMLSK(gl)QR_
GRB2	Ubiquitylation	K109	0.381	-0.002	_FGNDVQHFK(gl)VLR_
HLA-A	Ubiquitylation	K92		-0.349	_NVK(gl)AQSQTDRVDLGTLR_
HLA-A	Ubiquitylation	K168		0.549	_SWTAADMAAQITK(gl)R_
HLA-A	Ubiquitylation	K346	-0.072	-0.211	_K(gl)GGSYTQAASSDSAQGSDVSLTACK(gl)V_
HLA-A	Ubiquitylation	K370	0.345	0.434	_K(gl)GGSYTQAASSDSAQGSDVSLTACK(gl)V_
HLA-B	Ubiquitylation	K177		-0.088	_YLENGKDK(gl)LER_
HLA-B	Ubiquitylation	K267		-0.118	_TFQK(gl)WAAVVVPSGEEQR_
HLA-C	Ubiquitylation	K120		-0.876	_GYDQSAYDGK(gl)DYIALNEDLR_
HLA-C	Ubiquitylation	K341	-0.900	-0.092	_SSGGK(gl)GGSCSQAACSNSAQGSDESLITCK_
HLA-E	Ubiquitylation	K208		-0.144	_SWTAVDTAAQISEQK(gl)SNDASEAEHQR_
HLA-E	Ubiquitylation	K238		-0.512	_GK(gl)ETLLHLEPPK_
HLA-E	Ubiquitylation	K384		0.061	_GGSYSK(gl)AEWSDSAQGSESHSL_
HRAS	Ubiquitylation	K170	-1.005		_K(gl)LNPPDESGPGCMSCK_
IFNAR1	Ubiquitylation	K86		-0.259	_LSGCQNITSTK(gl)CNFSSLK_
IFNAR1	Phosphorylation	S495		-0.050	_NLLLSTS(ph)EEQIEK_
IFNAR2	Phosphorylation	S400	-0.542	-0.094	_RKS(ph)PLQDPFPEEDYSSTEGSGGR_
IFNGR1	Ubiquitylation	K299	-0.875	-0.201	_SATLETK(gl)PESK_
KRAS	Ubiquitylation	K128	1.528	1.433	_TVDTK(gl)QAHELAK_
KRAS	Ubiquitylation	K235	0.591	0.087	_TVDTK(gl)QAQDLAR_
KRAS	Ubiquitylation	K254	-0.450	-0.156	_SYGIPFIETSAK(gl)TR_
LCK	Phosphorylation	T37		-0.435	_YRPENTPEPVSTSVSHYGAEPT(ph)TVSPCPSSSAK_
LCK	Ubiquitylation	K191	-0.112	0.264	_ESETTK(gl)GAYSLSIR_
LCK	Ubiquitylation	K235	0.323		_AQFDTLQK(gl)LVK_
LCK	Ubiquitylation	K259		-1.613	_LTTVCPTVK(gl)PQTQGLAK_
MAP2K1	Ubiquitylation	K192	-0.205	-0.241	_DVK(gl)PSNILVNSR_
MAP2K1	Phosphorylation	S385		0.066	_RSDAEEVDFAGWLCSTIGLNQPS(ph)TPTHAAGV_
MAP2K1	Phosphorylation	T386		0.377	_RSDAEEVDFAGWLCSTIGLNQPST(ph)PTHAAGV_
MAP2K2	Phosphorylation	S23	0.873	0.258	_RKPVLPALTINPTIAEGPS(ph)PTSEGASEANLVDLQK_
MAP2K2	Phosphorylation	T25		0.439	_RKPVLPALTINPTIAEGPSPT(ph)SEGASEANLVDLQK_
MAP2K2	Ubiquitylation	K192	-0.205	-0.241	_DVK(gl)PSNILVNSR_
MAP2K2	Phosphorylation	S293		-0.361	_ELEAIFGRPVVDGEEGEPHS(ph)ISPR_
MAP2K2	Phosphorylation	S295	-0.234	0.026	_ELEAIFGRPVVDGEEGEPHSIS(ph)PR_
MAP2K2	Phosphorylation	T394	0.570	0.158	_LNQPGT(ph)PTR_
MAPK3	Phosphorylation	Y204	-0.807	-2.487	_IADPEHDHTGFLTEY(ph)VATR_
MAPK3	Ubiquitylation	K289		-0.608	_NYLQSLPSKTK(gl)_
MICA	Ubiquitylation	K94		-0.310	_DLTGNGK(gl)DLR_
MICA	Ubiquitylation	K170		-0.702	_NFLK(gl)EDAMK_
MICB	Ubiquitylation	K190		-0.314	_AMQADCLQK(gl)LQR_
NFAT5	Phosphorylation	S163		-0.941	_RHTVLYIS(ph)PPPEDLLDNSR_
NFAT5	Phosphorylation	S578	1.128	1.267	_KEIS(ph)SPARPCSFEEAM(ox)K_
NFAT5	Phosphorylation	S579		1.019	_KEISS(ph)PARPCSFEEAM(ox)K_
NFATC2	Phosphorylation	S53	-0.845	-1.099	_VAS(ph)PPSGPAYPDDVLDYGLKPYSPLASLSGEPPGR_
NFATC2	Phosphorylation	T325	-0.605	0.168	_T(ph)SPDPSPVSAAPSK_
NFATC2	Phosphorylation	S326	-0.605	0.168	_T(ph)SPDPSPVSAAPSK_
NFATC4	Phosphorylation	S289	-1.594	-0.700	_RGS(ph)LGEEGSEPPPPPPLPLAR_
NFATC4	Phosphorylation	S311		0.305	_DPGS(ph)PGPFDYVGAPPAESIPQK_
NFATC4	Phosphorylation	S334	0.917	0.074	_RTS(ph)SEQAVALPR_
NRAS	Ubiquitylation	K128	1.528	1.433	_TVDTK(gl)QAHELAK_
PAK1	Phosphorylation	S174	-1.439	-0.597	_AVSETPAVPPVS(ph)EDEDDDDDDATPPPVIAPRPEHTK_
PAK1	Phosphorylation	T212		0.312	_SVIEPLPVT(ph)PTR_
PAK1	Phosphorylation	T219	-0.560	-0.962	_DVAT(ph)SPISPTENNTT(ph)PPDALTR_
PAK1	Phosphorylation	S220	-0.916	-0.774	_DVATS(ph)PISPTENNTTPPDALTR_
PAK1	Phosphorylation	S223	1.033	0.153	_DVATSPIS(ph)PTENNTTPPDALTR_
PAK1	Phosphorylation	T225	-1.278		_DVATSPISPT(ph)ENNTTPPDALTR_
PAK1	Phosphorylation	T230	-1.418	-1.502	_DVATSPISPTENNTT(ph)PPDALTR_
PIK3CA	Ubiquitylation	K864	0.390	0.588	_NSHTIM(ox)QIQCK(gl)GGLK_
PIK3CA	Ubiquitylation	K868	0.204	0.651	_NSHTIM(ox)QIQCKGGLK(gl)_
PIK3CA	Ubiquitylation	K974	-0.273		_GAQECTK(gl)TREFER_
PIK3CB	Ubiquitylation	K1044		0.990	_SEEEALKQFKQK(gl)_
PIK3R2	Phosphorylation	S262		-2.237	_APPPPS(ph)SPPPGGAPDGSEPSPDFPALLVEK_
PIK3R2	Phosphorylation	S263		-2.237	_APPPPS(ph)SPPPGGAPDGSEPSPDFPALLVEK_
PIK3R2	Ubiquitylation	K500	-0.189		_IFEEQGQTQEK(gl)CSK_
PIK3R2	Ubiquitylation	K541	-0.609		_TK(gl)LEQQLR_
PIK3R2	Ubiquitylation	K564	-0.431	-1.022	_MNSLK(gl)PDLMQLR_
PIK3R3	Ubiquitylation	K226		-0.376	_YQQDQLVKEDNIDAVGKK(gl)_
PIK3R3	Ubiquitylation	K320		0.385	_LGEIHDSK(gl)MR_
PLCG1	Ubiquitylation	K300		8.031	_DLK(gl)NMLSQVNYR_
PLCG1	Ubiquitylation	K348		-0.219	_SLMYSAQK(gl)TMDLPFLEASTLR_
PLCG1	Ubiquitylation	K552		-0.355	_NMAQYFK(gl)K_
PLCG1	Ubiquitylation	K553		-0.355	_NMAQYFK(gl)K_
PLCG1	Ubiquitylation	K1063	0.864	0.355	_LTEGK(gl)IMER_
PLCG1	Phosphorylation	S1370	0.475	0.515	_AREGS(ph)FESR_
PPP3CA	Ubiquitylation	K32	-0.137		_LTAK(gl)EVFDNDGKPR_
PPP3CA	Ubiquitylation	K56		0.132	_VDVLK(gl)NHLVK_
PPP3CA	Ubiquitylation	K323		0.705	_AAVLK(gl)YENNVMNIR_
PPP3CA	Ubiquitylation	K405		0.078	_AIGK(gl)MAR_
PPP3CB	Ubiquitylation	K32	-0.137		_LTAK(gl)EVFDNDGKPR_
PPP3CB	Ubiquitylation	K56		0.132	_VDVLK(gl)NHLVK_
PPP3CB	Ubiquitylation	K323		0.705	_AAVLK(gl)YENNVMNIR_
PPP3CB	Ubiquitylation	K405		0.078	_AIGK(gl)MAR_
PPP3CC	Ubiquitylation	K32	-0.137		_LTAK(gl)EVFDNDGKPR_
PPP3CC	Ubiquitylation	K56		0.132	_VDVLK(gl)NHLVK_
PPP3CC	Ubiquitylation	K323		0.705	_AAVLK(gl)YENNVMNIR_
PPP3CC	Ubiquitylation	K405		0.078	_AIGK(gl)MAR_
PRKCA	Phosphorylation	S10	-0.650	0.036	_(ac)ADVFPGNDS(ph)TASQDVANR_
PRKCA	Phosphorylation	S13	-1.038	0.335	_(ac)ADVFPGNDSTAS(ph)QDVANR_
PRKCA	Phosphorylation	S226	0.693	0.415	_STLNPQWNES(ph)FTFK_
PRKCA	Ubiquitylation	K316	-0.522	-0.535	_LGPAGNK(gl)VISPSEDR_
PRKCB	Phosphorylation	S10	-0.650	0.036	_(ac)ADVFPGNDS(ph)TASQDVANR_
PRKCB	Phosphorylation	S13	-1.038	0.335	_(ac)ADVFPGNDSTAS(ph)QDVANR_
PRKCB	Phosphorylation	S226	0.693	0.415	_STLNPQWNES(ph)FTFK_
PRKCB	Ubiquitylation	K315	0.213	0.518	_ISQGTK(gl)VPEEK_
PTPN11	Ubiquitylation	K124	0.562		_EAEK(gl)LLTEK_
RAC1	Ubiquitylation	K115	-1.745	-0.215	_AK(gl)WYPEVR_
RAC1	Ubiquitylation	K142	0.492		_LDLRDDK(gl)DTIEK_
RAC1	Ubiquitylation	K152	0.099	-0.292	_K(gl)LTPITYPQGLAMAK_
RAC1	Ubiquitylation	K166	-0.981	-0.655	_LTPITYPQGLAMAK(gl)EIGAVK_
RAC1	Ubiquitylation	K172	1.026	0.412	_EIGAVK(gl)YLECSALTQR_
RAC1	Ubiquitylation	K185	-0.113	0.578	_GLK(gl)TVFDEAIR_
RAC1	Ubiquitylation	K202	-1.379	-1.447	_AVLCPPPVK(gl)KR_
RAC1	Ubiquitylation	K203	-1.708	-1.447	_AVLCPPPVKK(gl)_
RAC2	Ubiquitylation	K115	-1.745	-0.215	_AK(gl)WYPEVR_
RAC2	Ubiquitylation	K142	0.492		_LDLRDDK(gl)DTIEK_
RAC2	Ubiquitylation	K152	0.099	-0.292	_K(gl)LTPITYPQGLAMAK_
RAC2	Ubiquitylation	K166	-0.981	-0.655	_LTPITYPQGLAMAK(gl)EIGAVK_
RAC2	Ubiquitylation	K172	1.026	0.412	_EIGAVK(gl)YLECSALTQR_
RAC2	Ubiquitylation	K185	-0.113	0.578	_GLK(gl)TVFDEAIR_
RAC2	Ubiquitylation	K202	-1.379	-1.447	_AVLCPPPVK(gl)KR_
RAC2	Ubiquitylation	K203	-1.708	-1.447	_AVLCPPPVKK(gl)_
RAC3	Ubiquitylation	K153		-0.133	_EIGSVK(gl)YLECSALTQR_
RAC3	Ubiquitylation	K183		-1.447	_AVLCPPPVK(gl)K_
RAC3	Ubiquitylation	K184	-1.812	-1.447	_AVLCPPPVKK(gl)_
RAF1	Phosphorylation	S29	0.028	-0.571	_DAVFDGSSCIS(ph)PTIVQQFGYQR_
RAF1	Phosphorylation	T31	0.028	-0.669	_DAVFDGSSCIS(ph)PTIVQQFGYQR_
RAF1	Phosphorylation	S244		0.053	_YSTPHAFTFNTSS(ph)PSSEGSLSQR_
RAF1	Phosphorylation	S259	-0.069	0.054	_STS(ph)TPNVHM(ox)VSTTLPVDSR_
RAF1	Phosphorylation	S301		-0.651	_SHSESASPSALSSSPNNLS(ph)PTGWSQPK_
RAF1	Phosphorylation	T303		-0.664	_SHSESASPSALSSSPNNLSPT(ph)GWSQPK_
RAF1	Phosphorylation	S497		-0.449	_SRWS(ph)GSQQVEQPTGSVLWMAPEVIR_
RAF1	Phosphorylation	S621	0.212	0.271	_SAS(ph)EPSLHR_
RAF1	Phosphorylation	S642	-0.197	0.463	_AAHTEDINACTLTTS(ph)PR_
SOS1	Phosphorylation	S1082	0.278		_IPESETESTASAPNS(ph)PR_
SOS1	Phosphorylation	S1166	0.097	-0.094	_RPESAPAES(ph)SPSK_
TNFRSF10B	Ubiquitylation	K369	-0.724		_KLGLMDNEIK(gl)VAK_