RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
MED1	1	0.780	-0.520				-1.530	-0.219
ANXA1	1	1.050	-0.850				1.883
POU2F3	1	-0.780	0.990
S100A7	1	0.370	-0.020					-3.874
S100A7	1	2.090	-1.290					-3.874
MAP2K1	1	-1.590	2.780
POU3F1	1	-1.360	2.530
TSG101	0	0.060	-0.480
TGM1	0	1.120	0.000					-3.061
DSP	0	-0.660	1.420			-2.938	-0.696	-0.240
STK4	0	0.260	-0.240
STK4	0	0.260	-0.240
STK4	0	0.260	-0.240				-0.235	-0.851
JAG1	0	-0.260	0.070
WNT5A	0
TXNIP	0
TGM3	0	-0.360	-0.180					-2.459
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
LATS1	0	0.520	-0.880
YAP1	0	1.010	-0.370
EPHA2	0	1.330	-0.460					0.221
PIP5K1A	0	0.290	-0.670			0.831
PIP5K1A	0	1.090	-0.930			0.831
PIP5K1A	0	0.290	-0.670		0.249	-0.303		-1.270
PIP5K1A	0	1.090	-0.930		0.249	-0.303		-1.270
SAV1	0	1.110	-0.700
IVL	0	-0.390	-0.340
CASP3	0	0.570	-0.390
EVPL	0	-1.190	1.640					-4.987
RBPJ	0	1.900	-0.160	-0.367	0.284	0.723	-0.090	0.134
ADAM9	0	0.290	-0.290
CLIC4	0			-0.105
SFN	0	0.890	0.120				-4.300
CTNND1	0	-0.610	1.090
CTNND1	0	-0.610	1.090	0.656	0.248		0.133	0.350

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADAM9	Ubiquitylation	K741	0.269	0.229	_SQTYESDGK(gl)NQANPSRQPGSVPR_
ADAM9	Phosphorylation	S758	-0.375	-0.893	_HVS(ph)PVTPPR_
ADAM9	Phosphorylation	T761	-0.724	-0.397	_HVSPVT(ph)PPREVPIYANR_
ADAM9	Ubiquitylation	K781	-2.213		_FAVPTYAAK(gl)QPQQFPSRPPPPQPK_
CASP3	Ubiquitylation	K11	-0.053	-0.687	_(ac)MENTENSVDSK(gl)SIK_
CASP3	Ubiquitylation	K14	-0.455	-0.687	_SIK(gl)NLEPK_
CASP3	Ubiquitylation	K57	-0.304	-1.817	_NFHK(gl)STGMTSR_
CASP3	Ubiquitylation	K82	-0.268	-0.605	_NLK(gl)YEVR_
CLIC4	Ubiquitylation	K106	-0.220	0.166	_YLK(gl)LSPK_
CLIC4	Ubiquitylation	K146	-0.028	0.596	_GLLK(gl)TLQK_
CLIC4	Ubiquitylation	K199	0.892	0.090	_LHIVK(gl)VVAK_
CLIC4	Ubiquitylation	K249	-0.463		_DEFTNTCPSDKEVEIAYSDVAK(gl)R_
CTNND1	Ubiquitylation	K25	0.530	0.979	_EQEAQFEK(gl)LTR_
CTNND1	Phosphorylation	S252	-0.119	0.039	_APS(ph)RQDVYGPQPQVR_
CTNND1	Phosphorylation	S268		-0.368	_VGGS(ph)SVDLHR_
CTNND1	Phosphorylation	S288	1.010	0.270	_S(ph)M(ox)GYDDLDYGM(ox)M(ox)SDYGTAR_
CTNND1	Phosphorylation	S349	1.049	0.905	_GSLAS(ph)LDSLRK_
CTNND1	Ubiquitylation	K355	-1.397	-0.159	_K(gl)GGPPPPNWR_
CTNND1	Ubiquitylation	K633	-1.794		_GK(gl)KPIEDPANDTVDFPKR_
CTNND1	Ubiquitylation	K676	-0.804		_ESK(gl)TPAILEASAGAIQNLCAGR_
CTNND1	Phosphorylation	S864		0.521	_SQSSHS(ph)YDDSTLPLIDR_
CTNND1	Phosphorylation	Y865	0.634	0.963	_SQSSHSY(ph)DDSTLPLIDR_
CTNND1	Phosphorylation	S899		0.562	_S(ph)GDLGDMEPLK_
DSP	Phosphorylation	S22	0.083	-0.070	_AES(ph)GPDLR_
DSP	Ubiquitylation	K94	0.120		_AELIVQPELK(gl)YGDGIQLTR_
DSP	Ubiquitylation	K140	0.440	0.037	_QMGQPCDAYQK(gl)R_
DSP	Ubiquitylation	K154	0.266	-0.098	_ALYK(gl)AISVPR_
DSP	Phosphorylation	S176		0.188	_GGGGYTCQS(ph)GSGWDEFTK_
DSP	Ubiquitylation	K239	-0.069		_WQLDKIK(gl)_
DSP	Ubiquitylation	K322		1.259	_MSQLEVK(gl)EK_
DSP	Ubiquitylation	K324		1.259	_MSQLEVK(gl)EK_
DSP	Ubiquitylation	K1028		1.475	_SLEDLK(gl)LK_
DSP	Ubiquitylation	K1802	0.287	1.314	_IQESK(gl)NQCTQVVQER_
DSP	Phosphorylation	S2209	0.704	1.055	_SMS(ph)FQGIR_
DSP	Phosphorylation	S2606	-0.052	-0.018	_S(ph)SSFSDTLEESSPIAAIFDTENLEK_
DSP	Phosphorylation	S2608	0.063	0.167	_SSS(ph)FSDTLEESSPIAAIFDTENLEK_
DSP	Phosphorylation	S2632		1.154	_SSSFSDTLEESS(ph)PIAAIFDTENLEKIS(ph)ITEGIERGIVDSITGQR_
DSP	Ubiquitylation	K2811	-0.793		_LLEAASVSSK(gl)GLPSPYNMSSAPGSR_
DSP	Phosphorylation	S2815	-1.038	-0.597	_GLPS(ph)PYNMSSAPGSR_
DSP	Phosphorylation	S2820	-0.905	-0.967	_GLPSPYNMS(ph)SAPGSR_
DSP	Phosphorylation	S2821	-0.690	-0.873	_GLPSPYNMSS(ph)APGSR_
DSP	Phosphorylation	S2825	-1.381	-0.714	_GLPSPYNM(ox)SSAPGS(ph)R_
EPHA2	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHA2	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHA2	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHA2	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHA2	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHA2	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EVPL	Ubiquitylation	K1087	0.203	0.013	_ELLALEK(gl)R_
JAG1	Ubiquitylation	K1142	-0.783		_HGANTVPIKDYENK(gl)_
LATS1	Phosphorylation	T246		-2.282	_SVT(ph)PPPPPR_
LATS1	Phosphorylation	T262		-1.011	_GTT(ph)PPPPSWEPNSQTK_
LATS1	Phosphorylation	S278	0.261	0.599	_RYS(ph)GNM(ox)EYVISR_
LATS1	Phosphorylation	S462	-0.408		_S(ph)NSFNNPLGNR_
LATS1	Phosphorylation	S464	0.077	-0.151	_SNS(ph)FNNPLGNR_
LATS1	Phosphorylation	S613	0.270	0.155	_KQITTS(ph)PITVR_
LATS1	Ubiquitylation	K688	0.392		_MLCQK(gl)ESNYIR_
MAP2K1	Ubiquitylation	K192	-0.205	-0.241	_DVK(gl)PSNILVNSR_
MAP2K1	Phosphorylation	S385		0.066	_RSDAEEVDFAGWLCSTIGLNQPS(ph)TPTHAAGV_
MAP2K1	Phosphorylation	T386		0.377	_RSDAEEVDFAGWLCSTIGLNQPST(ph)PTHAAGV_
MED1	Phosphorylation	S664		3.368	_DNPAQDFSTLYGSS(ph)PLER_
MED1	Phosphorylation	S771	-1.422		_LSS(ph)SDSIGPDVTDILSDIAEEASKLPSTSDDCPAIGTPLR_
MED1	Phosphorylation	T1051	-1.201	-1.247	_SQT(ph)PPGVATPPIPK_
MED1	Phosphorylation	T1057		-1.294	_SQT(ph)PPGVAT(ph)PPIPK_
MED1	Phosphorylation	S1155	0.689		_NSSQSGGKPGS(ph)SPITK_
MED1	Phosphorylation	S1156	0.829	1.055	_NSSQSGGKPGSS(ph)PITK_
MED1	Phosphorylation	S1192		-0.792	_PSSLM(ox)NPSLSKPNIS(ph)PSHSRPPGGSDK_
MED1	Phosphorylation	S1223	1.061	1.013	_AKS(ph)PISSGSGGSHM(ox)SGTSSSSGM(ox)K_
MED1	Phosphorylation	S1433	-0.191		_NYGS(ph)PLISGSTPK_
PIP5K1A	Ubiquitylation	K78		0.181	_SVDSSGETTYK(gl)K_
PIP5K1A	Ubiquitylation	K79		0.181	_SVDSSGETTYK(gl)K_
PIP5K1A	Ubiquitylation	K103	-0.225	-2.556	_GAIQLGITHTVGSLSTK(gl)PER_
PIP5K1A	Ubiquitylation	K223	-0.376		_EK(gl)PLPTFK_
PIP5K1A	Phosphorylation	S458		-1.008	_KIPLKPS(ph)PSK_
PIP5K1A	Phosphorylation	S460		-1.118	_KIPLKPSPS(ph)K_
PIP5K1A	Phosphorylation	S475	-0.061	0.135	_RAGS(ph)SGNSCITYQPSVSGEHK_
PIP5K1A	Phosphorylation	S476	0.621		_RAGSS(ph)GNSCITYQPSVSGEHK_
POU2F3	Phosphorylation	S408	0.932	1.562	_RTS(ph)IETNIR_
POU3F1	Ubiquitylation	K377	0.051	-0.035	_LK(gl)PLLNK_
SAV1	Phosphorylation	S27		1.144	_KETS(ph)PLLR_
SFN	Ubiquitylation	K11	0.561	0.388	_AK(gl)LAEQAER_
SFN	Ubiquitylation	K49	-0.093	0.337	_NLLSVAYK(gl)_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
STK4	Ubiquitylation	K176		-0.350	_DIK(gl)AGNILLNTEGHAK_
STK4	Ubiquitylation	K205	-0.223	-0.386	_LADFGVAGQLTDTMAK(gl)R_
STK4	Phosphorylation	S320	0.555	0.552	_EVDQDDEENS(ph)EEDEMDSGTM(ox)VR_
STK4	Phosphorylation	S344	0.573	0.366	_EMDQDDEENS(ph)EEDEMDSGTMVR_
TSG101	Ubiquitylation	K237	-1.467	0.252	_ASLISAVSDK(gl)LR_
TSG101	Ubiquitylation	K257	0.192	0.329	_AQAELNALK(gl)R_
TXNIP	Ubiquitylation	K26	-0.901	-1.235	_VYGSGEK(gl)VAGR_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_
YAP1	Phosphorylation	S61	-0.064	0.017	_GDS(ph)ETDLEALFNAVMNPK_
YAP1	Phosphorylation	T63	-0.159	-0.257	_GDSET(ph)DLEALFNAVM(ox)NPK_
YAP1	Phosphorylation	T110		0.467	_QAST(ph)DAGTAGALTPQHVR_
YAP1	Phosphorylation	S127		-1.544	_AHS(ph)SPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR_
YAP1	Phosphorylation	S131	-1.256	-1.096	_AHSSPAS(ph)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR_
YAP1	Ubiquitylation	K315	-0.002		_LQQLQMEK(gl)ER_
YAP1	Ubiquitylation	K321	-1.043		_LK(gl)QQELLR_
YAP1	Ubiquitylation	K342	-0.589		_NINPSTANSPK(gl)CQELALR_
YAP1	Phosphorylation	S367		0.272	_SQLPTLEQDGGTQNPVSS(ph)PGMSQELR_
YAP1	Phosphorylation	S397	-0.200		_DES(ph)TDSGLSM(ox)SSYSVPR_