RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SMARCA1	2	0.820	0.230	1.940	0.165	0.532	1.513	0.625
PPP1CC	2	0.390	-0.090
PPP1CC	2	0.390	-0.090	0.568	0.526	0.917	-0.533	0.173
BAG1	1
FZD7	1	2.260	-1.160
AIFM1	1	1.570	0.130	0.210	0.652	-1.014	0.280	0.386
COPS2	1	-0.730	0.380	0.562	1.638	0.915
MAP2K1	1	-1.590	2.780
HDAC2	1	-2.390	4.970
HDAC2	1	-2.390	4.970	0.187	-0.007	0.825
HIPK2	0	-0.990	0.680
PSEN1	0	0.930	-1.110
MEF2C	0	-0.980	1.550
MEF2C	0	-0.980	1.550
ADNP2	0	0.130	0.020				0.959	0.001
MYEF2	0			-0.766	-1.685	-0.392	-0.108	0.500
STMN2	0	-0.710	1.190
STMN2	0	-0.710	1.190
STMN2	0	-0.710	1.190
NAPA	0			0.479			0.251	0.740
MTPN	0	-1.050	2.170
GATA3	0	0.000	-0.660
WNT5A	0
PIGT	0	-0.980	1.680				0.580	0.500
ALDH1A2	0	-1.010	0.740
MNX1	0	-1.070	1.390
ITM2C	0	-0.570	0.530
RB1	0	1.180	-1.070		0.429	0.755
RB1	0	1.180	-1.070
RTN1	0	0.340	-0.340
EPHA2	0	1.330	-0.460					0.221
PTPRD	0	-0.450	-0.070				-0.194	0.365
ATP2B2	0	1.540	-0.900				0.593	0.487
DPYSL5	0	0.790	-0.740	-0.911
BRSK1	0	0.330	-0.040
FZD5	0	-0.880	0.520
HIPK1	0	1.760	-0.820
RYK	0	0.020	0.190
CDK5	0	-1.100	1.740	-0.236			1.063	0.312
DDIT4	0	0.750	-0.520
RBPJ	0	1.900	-0.160	-0.367	0.284	0.723	-0.090	0.134
CEBPB	0	0.400	-0.930
BRSK2	0	1.070	-0.640
POU3F2	0	-0.280	0.600
POU3F2	0	-0.280	0.600
DYNC2H1	0	-1.530	1.820				-0.319	0.050
DYNC2H1	0	-1.530	1.820	0.313
LDB1	0	0.670	-0.650	-1.168

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADNP2	Ubiquitylation	K872	-1.370	-1.320	_VRPQAEGTPGSTGK(gl)R_
AIFM1	Ubiquitylation	K111	1.676		_ISGLGLTPEQKQK(gl)_
AIFM1	Ubiquitylation	K518	-0.545	-0.262	_ATAQDNPK(gl)SATEQSGTGIR_
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
ATP2B2	Ubiquitylation	K15	1.343		_(ac)GDMANNSVAYSGVK(gl)NSLK_
ATP2B2	Phosphorylation	S17	0.515	0.902	_NS(ph)LKEANHDGDFGITLAELR_
ATP2B2	Ubiquitylation	K19	1.343		_(ac)GDMANNSVAYSGVK(gl)NSLK_
ATP2B2	Ubiquitylation	K48	1.326		_K(gl)IQESYGDVYGICTK_
ATP2B2	Ubiquitylation	K62	0.733		_IQESYGDVYGICTK(gl)LK_
ATP2B2	Ubiquitylation	K64	0.642	0.801	_LK(gl)TSPNEGLSGNPADLER_
ATP2B2	Ubiquitylation	K193	-0.102	0.773	_IEQEQK(gl)FTVIR_
ATP2B2	Ubiquitylation	K365		0.997	_SVLQGK(gl)LTK_
ATP2B2	Ubiquitylation	K747	1.309		_NEK(gl)GEIEQER_
ATP2B2	Ubiquitylation	K773		-0.186	_SSPTDK(gl)HTLVK_
ATP2B2	Ubiquitylation	K807	0.010	1.083	_QVVAVTGDGTNDGPALKK(gl)_
ATP2B2	Ubiquitylation	K921	-0.811	0.202	_NK(gl)PLISR_
ATP2B2	Phosphorylation	S1177	0.214	0.537	_S(ph)SIHNFM(ox)THPEFR_
ATP2B2	Phosphorylation	S1178	0.214	0.537	_S(ph)SIHNFM(ox)THPEFR_
ATP2B2	Phosphorylation	S1193	-0.342	-0.629	_IEDS(ph)EPHIPLIDDTDAEDDAPTKR_
BAG1	Phosphorylation	S119		2.802	_S(ph)QEVTRDEESTR_
BAG1	Ubiquitylation	K273	-0.087	0.605	_DLQAEALCK(gl)LDRR_
BRSK1	Phosphorylation	S489	-0.354	-0.198	_NSFLGS(ph)PR_
BRSK2	Phosphorylation	S294		0.075	_SLPS(ph)LEDIDPDVLDSMHSLGCFR_
BRSK2	Phosphorylation	S382	0.812	-1.070	_S(ph)MEVLSVTDGGSPVPAR_
BRSK2	Phosphorylation	S393	-0.463	-1.217	_S(ph)M(ox)EVLSVTDGGS(ph)PVPAR_
BRSK2	Phosphorylation	S423	-0.553	-0.633	_SISGASSGLSTS(ph)PLSSPR_
BRSK2	Phosphorylation	S489	-0.354	-0.198	_NSFLGS(ph)PR_
CDK5	Ubiquitylation	K56	0.606	0.237	_EICLLK(gl)ELK_
CEBPB	Phosphorylation	S231		-0.660	_AYLGYQAVPSGSSGSLSTSSSSS(ph)PPGTPSPADAK_
COPS2	Ubiquitylation	K423	0.078	1.264	_IDQVNQLLELDHQK(gl)R_
COPS2	Ubiquitylation	K434	0.640	0.787	_YTALDK(gl)WTNQLNSLNQAVVSK_
DDIT4	Ubiquitylation	K129	-0.435	-0.920	_LLM(ox)PSQLVSQVGK(gl)ELLR_
DYNC2H1	Ubiquitylation	K158		0.457	_SDTNLTK(gl)LK_
DYNC2H1	Ubiquitylation	K398		-0.876	_IIAPAEQK(gl)IAGK_
DYNC2H1	Ubiquitylation	K1248		-0.579	_AADLK(gl)DLNSR_
DYNC2H1	Ubiquitylation	K2608		-1.364	_LNSTDLK(gl)DVIKK_
DYNC2H1	Ubiquitylation	K2613		-1.117	_LNSTDLKDVIKK(gl)_
EPHA2	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHA2	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHA2	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHA2	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHA2	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHA2	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
FZD5	Ubiquitylation	K209		-0.563	_ESHPLYNK(gl)VR_
FZD7	Ubiquitylation	K569	0.551	0.319	_LSHSSK(gl)GETAV_
GATA3	Phosphorylation	S162	-1.195	-0.563	_DVS(ph)PDPSLSTPGSAGSAR_
HDAC2	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC2	Ubiquitylation	K67		-0.467	_ATAEEMTK(gl)YHSDEYIK_
HDAC2	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC2	Ubiquitylation	K284	0.749		_GHAK(gl)CVEVVK_
HDAC2	Phosphorylation	S394	-0.865	-0.997	_M(ox)LPHAPGVQM(ox)QAIPEDAVHEDS(ph)GDEDGEDPDKR_
HDAC2	Phosphorylation	S422	0.482	0.781	_IACDEEFS(ph)DSEDEGEGGR_
HIPK1	Ubiquitylation	K492		-0.060	_YISQTQGLPAEYLLSAGTK(gl)TTR_
HIPK1	Ubiquitylation	K614		-0.350	_SCFQNMEICK(gl)R_
HIPK1	Phosphorylation	S1271		-0.186	_GSTIYTGYPLS(ph)PTK_
HIPK2	Ubiquitylation	K492		-0.060	_YISQTQGLPAEYLLSAGTK(gl)TTR_
HIPK2	Ubiquitylation	K614		-0.350	_SCFQNMEICK(gl)R_
ITM2C	Ubiquitylation	K3	-0.833	-0.100	_VK(gl)ISFQPAVAGIK_
ITM2C	Ubiquitylation	K14	-1.180	-0.498	_ISFQPAVAGIK(gl)GDK(gl)ADK_
ITM2C	Ubiquitylation	K17		-0.656	_ISFQPAVAGIKGDK(gl)_
ITM2C	Ubiquitylation	K20	-2.698		_GDKADK(gl)ASASAPAPASATEILLTPAR_
LDB1	Ubiquitylation	K76		-0.052	_IFELNK(gl)R_
LDB1	Ubiquitylation	K271		-0.154	_DCLK(gl)TCLFQK_
LDB1	Ubiquitylation	K277	-1.611	-0.630	_TCLFQK(gl)WQR_
LDB1	Phosphorylation	S323	-0.402	-0.031	_KS(ph)PASTFALSSQVPDVMVVGEPTLMGGEFGDEDER_
MAP2K1	Ubiquitylation	K192	-0.205	-0.241	_DVK(gl)PSNILVNSR_
MAP2K1	Phosphorylation	S385		0.066	_RSDAEEVDFAGWLCSTIGLNQPS(ph)TPTHAAGV_
MAP2K1	Phosphorylation	T386		0.377	_RSDAEEVDFAGWLCSTIGLNQPST(ph)PTHAAGV_
MEF2C	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2C	Phosphorylation	S240	0.008	0.302	_NS(ph)PGLLVSPGNLNK_
MEF2C	Phosphorylation	S406	0.272	0.338	_SEPVS(ph)PPRDR_
MNX1	Phosphorylation	S77	1.417		_LRAES(ph)PSPPR_
MNX1	Ubiquitylation	K240	-0.232	-0.808	_MPDFNSQAQSNLLGK(gl)CR_
MTPN	Ubiquitylation	K4	0.021		_(ac)CDK(gl)EFMWALK_
MTPN	Phosphorylation	T31		0.488	_GEDVNRT(ph)LEGGR_
MTPN	Ubiquitylation	K90	0.537	-0.107	_LLLSK(gl)GADK_
MTPN	Ubiquitylation	K97	-0.211		_TVK(gl)GPDGLTAFEATDNQAIK_
MYEF2	Phosphorylation	T13	-1.184	-1.261	_(ac)ADANKAEVPGAT(ph)GGDSPHLQPAEPPGEPR_
MYEF2	Phosphorylation	S17	-1.239	-1.089	_AEVPGATGGDS(ph)PHLQPAEPPGEPR_
MYEF2	Ubiquitylation	K117		0.042	_WQAIK(gl)DLMR_
MYEF2	Ubiquitylation	K521	0.604		_IGSK(gl)GNQIFVR_
NAPA	Ubiquitylation	K153	-0.341		_AIAHYEQSADYYK(gl)GEESNSSANK_
PIGT	Ubiquitylation	K79		0.791	_ALGQLISK(gl)YSLR_
POU3F2	Phosphorylation	S341	0.357	0.518	_WLEEADSSSGS(ph)PTSIDK_
POU3F2	Ubiquitylation	K377	0.051	-0.035	_LK(gl)PLLNK_
PPP1CC	Ubiquitylation	K35	-0.280	-0.504	_GSKPGK(gl)NVQLQENEIR_
PPP1CC	Ubiquitylation	K50	-0.131	0.478	_GLCLK(gl)SR_
PPP1CC	Ubiquitylation	K150	0.321	0.619	_IYGFYDECK(gl)RR_
PPP1CC	Ubiquitylation	K156	0.883	1.047	_YNIK(gl)LWK_
PPP1CC	Ubiquitylation	K247	0.313		_FLHK(gl)HDLDLICR_
PPP1CC	Ubiquitylation	K269	2.628	2.591	_AHQVVEDGYEFFAK(gl)R_
PPP1CC	Phosphorylation	T320		-0.561	_KPNATRPVT(ph)PPR_
PPP1CC	Ubiquitylation	K328	0.848	0.425	_GMITK(gl)QAK_
PSEN1	Phosphorylation	S313		0.844	_VSKNS(ph)KYNAESTER_
PSEN1	Ubiquitylation	K314	0.016	0.414	_NSK(gl)YNAESTER_
PSEN1	Phosphorylation	S366	-0.340	0.055	_AAVQELSS(ph)SILAGEDPEER_
PSEN1	Phosphorylation	S367	0.005	0.066	_AAVQELSSS(ph)ILAGEDPEER_
PTPRD	Ubiquitylation	K1650	-0.595	-1.027	_LLASSK(gl)AHTSR_
PTPRD	Ubiquitylation	K1665	-0.790		_FISANLPCNK(gl)FK_
RB1	Phosphorylation	S69	-3.602	-3.397	_TAATAAAAAAEPPAPPPPPPPEEDPEQDS(ph)GPEDLPLVR_
RB1	Ubiquitylation	K97	-0.546		_LK(gl)IPDHVR_
RB1	Phosphorylation	T388	0.005	0.116	_TLQTDSIDSFETQRT(ph)PR_
RB1	Phosphorylation	T405	-0.851	-0.901	_KSNLDEEVNVIPPHT(ph)PVR_
RB1	Phosphorylation	S820		-0.019	_S(ph)PYKFPSSPLR_
RB1	Ubiquitylation	K823	-2.214		_SPYK(gl)FPSSPLR_
RB1	Phosphorylation	S827	0.824	0.111	_FPSS(ph)PLR_
RB1	Phosphorylation	S839	-0.701	-1.045	_IPGGNIYIS(ph)PLKS(ph)PYK_
RB1	Ubiquitylation	K842		-0.751	_IPGGNIYISPLK(gl)SPYK_
RB1	Phosphorylation	S843	-0.701	-0.022	_IPGGNIYIS(ph)PLKS(ph)PYK_
RB1	Ubiquitylation	K846	-2.084		_SPYK(gl)ISEGLPTPTK_
RB1	Phosphorylation	T853	0.039	-0.555	_ISEGLPT(ph)PTKM(ox)T(ph)PR_
RB1	Ubiquitylation	K856	-1.350		_ISEGLPTPTK(gl)MTPR_
RB1	Phosphorylation	T858	-0.782	0.564	_ISEGLPT(ph)PTKMT(ph)PR_
RB1	Ubiquitylation	K879	-0.187		_FQK(gl)INQMVCNSDR_
RTN1	Phosphorylation	S352	0.946	0.948	_GSIS(ph)EDELITAIK_
RYK	Ubiquitylation	K302	0.463		_IEK(gl)NDLR_
SMARCA1	Phosphorylation	T118	-0.873	-0.490	_SPT(ph)SPLNMK_
SMARCA1	Ubiquitylation	K862		1.344	_LLTQGFTNWTK(gl)R_
STMN2	Phosphorylation	S46	1.229	1.195	_KKDLS(ph)LEEIQK_
STMN2	Ubiquitylation	K52	-0.553	0.474	_DLSLEEIQK(gl)K_
STMN2	Ubiquitylation	K53	0.144		_DLSLEEIQKK(gl)_
STMN2	Ubiquitylation	K129	0.422	0.458	_ALEENNNFSK(gl)MAEEK_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_