RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
USP28	2	1.150	-0.550
UCHL5	1	0.080	0.070
UCHL5	1	0.080	0.070	0.053	-0.539	0.136
STAMBP	1	-1.500	2.650
USP1	1	2.430	-1.190
USP32	1	-0.200	0.170
USP32	1	-0.020	0.150
USP33	0	0.750	-0.150
USP11	0	0.840	-0.200	-0.333	0.001	0.704
USP10	0	-0.120	-0.210	0.958	0.948	0.289	-0.190	-0.313
USP42	0	0.050	-0.340
USP42	0	0.050	-0.340				-1.459	0.532
USP46	0	0.220	0.340
USP9Y	0	0.000	-0.200	-0.309	0.196	0.205	-0.019	0.128
WDR48	0	0.940	-0.610	0.277			-0.306	-0.478
TNFAIP3	0	0.760	-0.500
USP22	0	-1.620	2.280	-0.102			-0.073	-0.208
USP9X	0	-0.520	0.800	-0.309	0.196	0.205	-0.019	0.128
USP15	0	1.570	-0.780
USP15	0	1.570	-0.780	0.925	-0.319	-0.221
USP20	0	-0.010	-0.210
USP8	0	0.830	-0.320
USP12	0	-1.250	1.890
UCHL1	0	-0.500	0.500				1.153	-0.238
UCHL1	0	-0.500	0.500	0.687
OTUD7B	0
BAP1	0			-0.249
USP19	0	-0.550	0.450				-3.664	-0.183
USP7	0	-0.600	0.590
USP7	0	-0.600	0.590	0.789	-0.077	0.319	-0.125	0.108

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BAP1	Phosphorylation	S292		0.575	_SASNKS(ph)PLVLEANR_
BAP1	Phosphorylation	S325	-0.806	-0.868	_APAASEGNHTDGAEEAAGSCAQAPS(ph)HSPPNKPK_
BAP1	Phosphorylation	S327		-1.164	_APAASEGNHTDGAEEAAGSCAQAPSHS(ph)PPNKPK_
BAP1	Phosphorylation	T517		-0.361	_SANPT(ph)RPSSPVTSHISK_
BAP1	Phosphorylation	S520		0.193	_SANPTRPS(ph)SPVTSHISK_
BAP1	Phosphorylation	S521	-0.315	-0.535	_SANPTRPSS(ph)PVTSHISK_
OTUD7B	Ubiquitylation	K93	0.152	0.969	_QDDIVQEK(gl)R_
OTUD7B	Phosphorylation	S100	0.815	0.868	_GIS(ph)HASSSIVSLAR_
OTUD7B	Phosphorylation	S449		-0.896	_WIPLSSDAQAPLAQPES(ph)PTASAGDEPR_
OTUD7B	Ubiquitylation	K644	0.103	0.509	_FLAEQK(gl)QK_
STAMBP	Ubiquitylation	K96	-0.832		_LK(gl)EIAFPK_
STAMBP	Ubiquitylation	K107	0.530	-0.048	_AEELK(gl)AELLK_
STAMBP	Ubiquitylation	K144	-0.041		_NMAIQQELEK(gl)EK_
STAMBP	Ubiquitylation	K146	-0.693		_NMAIQQELEKEK(gl)QR_
STAMBP	Ubiquitylation	K180		0.159	_LK(gl)IVQEFGK_
TNFAIP3	Ubiquitylation	K722	0.496	0.176	_ASCK(gl)NILACR_
UCHL1	Ubiquitylation	K4	-0.164	-0.657	_MQLK(gl)PMEINPEMLNK_
UCHL1	Ubiquitylation	K65	-0.004	-0.789	_K(gl)QIEELKGQEVSPK_
UCHL1	Ubiquitylation	K71	-0.121	-0.325	_QIEELK(gl)GQEVSPK_
UCHL1	Ubiquitylation	K78	-0.595		_QIEELKGQEVSPK(gl)VYFMK_
UCHL1	Ubiquitylation	K123	-0.013	-0.297	_QFLSETEK(gl)M(ox)SPEDR_
UCHL1	Ubiquitylation	K135	-0.048		_CFEK(gl)NEAIQAAHDAVAQEGQCR_
UCHL1	Ubiquitylation	K195	-0.285	-0.704	_MPFPVNHGASSEDTLLK(gl)DAAK_
UCHL1	Ubiquitylation	K221	-0.155	-0.216	_FSAVALCK(gl)AA_
UCHL5	Ubiquitylation	K154	0.112	0.468	_QQMFEFDTK(gl)TSAK_
UCHL5	Ubiquitylation	K210	-0.599	0.531	_RIQK(gl)YSEGEIR_
UCHL5	Ubiquitylation	K234	0.086	0.335	_MIYEQK(gl)IAELQR_
UCHL5	Ubiquitylation	K277	0.914		_NQMLIEEEVQK(gl)LKR_
UCHL5	Ubiquitylation	K279	1.986	0.052	_NQMLIEEEVQKLK(gl)_
UCHL5	Ubiquitylation	K315	-0.307		_TLAEHQQLIPLVEK(gl)AK_
UCHL5	Ubiquitylation	K317	-0.037	0.724	_TLAEHQQLIPLVEKAK(gl)_
USP1	Phosphorylation	S42	1.055		_ALDFTDS(ph)QENEEK_
USP1	Phosphorylation	S66		0.045	_ASEIDQVVPAAQS(ph)SPINCEK_
USP1	Phosphorylation	S67	-0.170	0.304	_ASEIDQVVPAAQSS(ph)PINCEK_
USP1	Phosphorylation	S475	-1.080	-0.086	_REDFQDISVPVQEDELSKVEESSEIS(ph)PEPK_
USP1	Ubiquitylation	K689	0.173	-1.509	_ASNPDK(gl)VASTAFAENR_
USP10	Phosphorylation	S76	0.220		_TPS(ph)YSISSTLNPQAPEFILGCTASK_
USP10	Phosphorylation	T208	-0.556	-0.706	_T(ph)CNSPQNSTDSVSDIVPDSPFPGALGSDTR_
USP10	Phosphorylation	S211		-0.454	_TCNS(ph)PQNSTDSVSDIVPDSPFPGALGSDTR_
USP10	Phosphorylation	S365	-0.539	-0.580	_YS(ph)PPAISPLVSEK_
USP10	Phosphorylation	S370	0.978	0.859	_YSPPAIS(ph)PLVSEK_
USP10	Ubiquitylation	K512	0.652		_LLTVNK(gl)SSLSEK_
USP10	Phosphorylation	S547	0.647	0.385	_LLS(ph)PSNEK_
USP10	Phosphorylation	S576	1.011	0.498	_NHSVNEEEQEEQGEGS(ph)EDEWEQVGPR_
USP10	Ubiquitylation	K662		-0.003	_ESVQGYTTK(gl)TK_
USP10	Ubiquitylation	K664	1.358		_TK(gl)QEVEISR_
USP10	Ubiquitylation	K780	0.763	0.364	_VINQYQVVK(gl)PTAER_
USP11	Ubiquitylation	K245	-0.175	-0.284	_LWAK(gl)NSEGSLDR_
USP11	Ubiquitylation	K385	-0.348		_SIVPHVFKNK(gl)_
USP11	Phosphorylation	S733	0.908	0.540	_TTS(ph)PEEVHAQPYIAIDWEPEMK_
USP11	Ubiquitylation	K776	-0.145	0.017	_HDCVGYVM(ox)KK(gl)_
USP11	Ubiquitylation	K835	0.273	0.465	_FSYTK(gl)FSR_
USP12	Ubiquitylation	K273	0.375	0.547	_YTK(gl)LSYR_
USP15	Phosphorylation	S225	-0.837		_GPS(ph)TPKKPLEQSC_
USP15	Phosphorylation	T226	-1.049	-0.318	_GPST(ph)PKKPLEQSC_
USP15	Phosphorylation	S229	0.423	0.578	_S(ph)PGASNFSTLPK_
USP20	Phosphorylation	S132	-0.292	-0.107	_AVPIAVADEGES(ph)ESEDDDLKPR_
USP20	Phosphorylation	S134	-0.317	-0.295	_AVPIAVADEGESES(ph)EDDDLKPR_
USP20	Phosphorylation	S305	0.041	1.231	_GGGSS(ph)QAETELLIPDEAGR_
USP22	Ubiquitylation	K35		0.350	_VDNWK(gl)QNLR_
USP22	Ubiquitylation	K152	-1.310	-0.895	_FSTWEPTK(gl)R_
USP22	Ubiquitylation	K159	-0.035	-0.557	_ELELLK(gl)HNPK_
USP22	Ubiquitylation	K166	-0.657	-0.098	_K(gl)ITSNCTIGLR_
USP22	Ubiquitylation	K382	-0.028	-1.061	_IK(gl)CSGCHSYQESTK_
USP28	Phosphorylation	S495	2.593	2.418	_ESTSTESSS(ph)QDVESTFSSPEDSLPK_
USP28	Phosphorylation	S1053	-0.658	-0.698	_EPPTIRPNS(ph)PYDLCSR_
USP32	Phosphorylation	T1326	0.843	-0.138	_DPALCQHKPLT(ph)PQGDELSEPR_
USP32	Phosphorylation	S1422	-0.094		_LSS(ph)SKENLDASK_
USP32	Phosphorylation	S1423	-1.950	2.890	_LSSS(ph)KENLDASK_
USP33	Ubiquitylation	K371		-0.567	_MCNK(gl)INK_
USP33	Ubiquitylation	K882	-0.583	0.278	_IAVTK(gl)CGNVMLR_
USP42	Phosphorylation	S75	-1.609	-1.482	_SKPS(ph)PQKDQALGDGIAPPQK_
USP42	Ubiquitylation	K279	0.356		_ALEQFVK(gl)PEQLDGENSYK_
USP42	Ubiquitylation	K327	0.355		_FANFTGGK(gl)IAK_
USP42	Ubiquitylation	K330	0.226		_FANFTGGKIAK(gl)_
USP42	Phosphorylation	S754	-0.957	-1.243	_DAEPQPGS(ph)PAAESLEEPDAAAGLSSTK_
USP42	Phosphorylation	S856	-0.784	-1.241	_DSALAEAPEGLS(ph)PAPPAR_
USP42	Phosphorylation	S1181	0.385	0.937	_RS(ph)EQKDPLEEPK_
USP46	Ubiquitylation	K273	0.375	0.547	_YTK(gl)LSYR_
USP7	Phosphorylation	S18	-0.616	-0.581	_AGEQQLS(ph)EPEDM(ox)EM(ox)EAGDTDDPPR_
USP7	Ubiquitylation	K158	-0.447	0.111	_IINYRDDEK(gl)SFSR_
USP7	Ubiquitylation	K264	-1.350		_AVYMMPTEGDDSSK(gl)SVPLALQR_
USP7	Ubiquitylation	K430	0.500		_FMYDPQTDQNIK(gl)INDR_
USP7	Ubiquitylation	K605		1.273	_YTVFK(gl)VLK_
USP7	Ubiquitylation	K834	-0.068	0.064	_MNYFQVAK(gl)TVAQR_
USP7	Ubiquitylation	K879	-0.271		_DLLQFFK(gl)PR_
USP7	Ubiquitylation	K892	0.402	0.347	_KLYYQQLK(gl)MK_
USP7	Ubiquitylation	K894	0.380		_MK(gl)ITDFENRR_
USP7	Ubiquitylation	K944	0.512	0.702	_KAVELGEK(gl)ASGK_
USP7	Ubiquitylation	K1106	0.275	0.509	_YTYLEK(gl)AIK_
USP8	Phosphorylation	S392	-0.015	0.284	_SDVS(ph)PIIQPVPSIK_
USP8	Phosphorylation	T577	-0.048	0.069	_RCPT(ph)PEIQKK_
USP8	Phosphorylation	S716	0.750	0.023	_S(ph)YSSPDITQAIQEEEKR_
USP8	Phosphorylation	S718	0.338	0.273	_SYS(ph)SPDITQAIQEEEKR_
USP9X	Ubiquitylation	K112	0.155	0.666	_GLDVK(gl)SEACQR_
USP9X	Ubiquitylation	K315		1.100	_SLK(gl)NLASR_
USP9X	Ubiquitylation	K1045		0.212	_VLMK(gl)LMPPDSTTIEK_
USP9X	Ubiquitylation	K1445	-1.104	-0.276	_ELLAFQTSEK(gl)K_
USP9X	Ubiquitylation	K1446	-1.104	0.061	_ELLAFQTSEKK(gl)_
USP9X	Ubiquitylation	K1627	-1.695		_DDVFGYPQQFEDK(gl)PALSK_
USP9X	Ubiquitylation	K1637	-0.957		_TEDRK(gl)EYNIGVLR_
USP9X	Ubiquitylation	K1798		-1.085	_LPPVLAIQLK(gl)R_
USP9X	Ubiquitylation	K2301	0.210	0.500	_IIEDCSNSEETVK(gl)LLR_
USP9X	Ubiquitylation	K2480	-0.335		_ACELCPEEVKK(gl)_
USP9X	Phosphorylation	S2563	-0.389	-0.274	_AQENYEGSEEVS(ph)PPQTK_
USP9Y	Ubiquitylation	K112	0.155	0.666	_GLDVK(gl)SEACQR_
USP9Y	Ubiquitylation	K315		1.100	_SLK(gl)NLASR_
USP9Y	Ubiquitylation	K1045		0.212	_VLMK(gl)LMPPDSTTIEK_
USP9Y	Ubiquitylation	K1445	-1.104	-0.276	_ELLAFQTSEK(gl)K_
USP9Y	Ubiquitylation	K1446	-1.104	0.061	_ELLAFQTSEKK(gl)_
USP9Y	Ubiquitylation	K1627	-1.695		_DDVFGYPQQFEDK(gl)PALSK_
USP9Y	Ubiquitylation	K1637	-0.957		_TEDRK(gl)EYNIGVLR_
USP9Y	Ubiquitylation	K1798		-1.085	_LPPVLAIQLK(gl)R_
USP9Y	Ubiquitylation	K2301	0.210	0.500	_IIEDCSNSEETVK(gl)LLR_
USP9Y	Ubiquitylation	K2480	-0.335		_ACELCPEEVKK(gl)_
USP9Y	Phosphorylation	S2563	-0.389	-0.274	_AQENYEGSEEVS(ph)PPQTK_
WDR48	Ubiquitylation	K294	0.228		_VLICEEK(gl)APVLK_