RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
FOXO3	2	-0.410	-0.120
FOXC1	1	-2.160	3.640	-1.217	-0.424	0.659
SMO	1	-0.690	1.110		1.532
FOXK2	1	0.260	-0.410
FOXK2	1	0.260	-0.410	0.009	0.098	0.300
FOXJ3	1	-1.390	2.020
CRKL	0	0.290	-0.620
BMP7	0
MID1	0	0.310	-0.200				-0.219	0.525
EYA1	0	-0.440	-0.140
HOXA5	0	0.030	-0.190					-0.887
GLI3	0	-0.980	1.650
BMPR1A	0	0.020	-0.130
HES1	0	-0.940	0.860
FOXP1	0	-1.070	2.200
SIX1	0	1.730	-1.230		-0.334	0.495
HOXD13	0	1.230	-1.330		-0.027	0.427
HOXD13	0	1.230	-1.330					-0.993
FOXA1	0	1.190	-0.010
NKX2-1	0	-0.730	0.480		0.174	0.236
NKX2-1	0	-0.730	0.480				-0.123
SHROOM3	0	1.220	-0.790			-3.936
ZEB1	0	0.640	-0.450
ZEB1	0	0.640	-0.450
FOXK1	0	-0.290	-0.420
FOXK1	0	-0.290	-0.420			0.639
C2CD3	0	-0.390	-0.010
SMAD2	0
FOXC2	0	0.270	-0.510	-1.217	-0.424	0.659
PTCH1	0	0.630	-0.690
FOXD2	0	-1.070	0.890
ASPH	0	0.610	-0.900		-0.983	-0.025	0.915	0.710

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BMP7	Ubiquitylation	K178		-0.107	_IYK(gl)DYIR_
BMPR1A	Ubiquitylation	K232	-0.391	0.172	_TIAK(gl)QIQMVR_
BMPR1A	Ubiquitylation	K477	0.265	-0.134	_EVVCVK(gl)R_
C2CD3	Ubiquitylation	K86	-0.837		_DALQTEPK(gl)AVR_
C2CD3	Phosphorylation	S2111	-1.046	-1.043	_EGPS(ph)CPSPGPFCR_
C2CD3	Phosphorylation	S2114		-1.200	_EGPSCPS(ph)PGPFCR_
CRKL	Phosphorylation	S41		0.868	_DS(ph)STCPGDYVLSVSENSR_
CRKL	Phosphorylation	S107	-0.818	-1.177	_YPS(ph)PPMGSVSAPNLPTAEDNLEYVR_
EYA1	Ubiquitylation	K513		-0.108	_NNVGGLLGPAK(gl)R_
EYA1	Ubiquitylation	K587		-1.219	_IGK(gl)ESCFER_
FOXA1	Phosphorylation	S331	-0.760	-0.866	_TGQLEGAPAPGPAAS(ph)PQTLDHSGATATGGASELK_
FOXC1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXC1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXC1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXC1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXC1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
FOXC2	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXC2	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC2	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC2	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXC2	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXC2	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXC2	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
FOXD2	Phosphorylation	S96		1.395	_GAAAAAGS(ph)PGPGAAAAR_
FOXJ3	Phosphorylation	S221	1.863	0.975	_VTLYNTDQDGS(ph)DSPR_
FOXJ3	Phosphorylation	S223	1.701		_VTLYNTDQDGSDS(ph)PR_
FOXK1	Phosphorylation	S213	-0.810	-0.624	_IQFTSLYHKEEAPAS(ph)PLRPLYPQIS(ph)PLK_
FOXK1	Phosphorylation	S223	-1.752	-1.220	_IQFTSLYHKEEAPAS(ph)PLRPLYPQIS(ph)PLK_
FOXK1	Phosphorylation	S239	-0.701		_SM(ox)VS(ph)PVPSPTGTISVPNSCPAS(ph)PR_
FOXK1	Phosphorylation	S243	-1.155	-0.657	_SM(ox)VSPVPS(ph)PTGTISVPNSCPAS(ph)PR_
FOXK1	Phosphorylation	S257	-0.928	-0.657	_SM(ox)VSPVPS(ph)PTGTISVPNSCPAS(ph)PR_
FOXK1	Ubiquitylation	K353	0.010	-1.365	_SQEEPGK(gl)GSFWR_
FOXK1	Phosphorylation	S416	0.350	-0.992	_S(ph)APAS(ph)PTHPGLMSPR_
FOXK1	Phosphorylation	S420	-0.935	-0.842	_SAPAS(ph)PTHPGLMSPR_
FOXK1	Phosphorylation	S428		0.360	_SAPAS(ph)PTHPGLMS(ph)PR_
FOXK1	Phosphorylation	T436	0.628	0.334	_SGGLQT(ph)PECLS(ph)R_
FOXK1	Phosphorylation	S441	-0.200	-0.052	_SGGLQT(ph)PECLS(ph)R_
FOXK1	Phosphorylation	S445	-0.629	-0.621	_EGS(ph)PIPHDPEFGSK_
FOXK2	Phosphorylation	T13		-0.036	_(ac)AAAAAALSGAGT(ph)PPAGGGAGGGGAGGGGSPPGGWAVAR_
FOXK2	Phosphorylation	S30	1.797	-0.885	_(ac)AAAAAALSGAGTPPAGGGAGGGGAGGGGS(ph)PPGGWAVAR_
FOXK2	Ubiquitylation	K353	0.010	-1.365	_SQEEPGK(gl)GSFWR_
FOXK2	Phosphorylation	S373	-0.698	-0.090	_SAPAS(ph)PNHAGVLSAHSSGAQTPESLSR_
FOXK2	Phosphorylation	S398	-1.237	-1.443	_EGS(ph)PAPLEPEPGAAQPK_
FOXK2	Phosphorylation	S428	0.348	-0.793	_FAQSAPGS(ph)PLSSQPVLITVQR_
FOXO3	Phosphorylation	S12		-1.324	_(ac)AEAPASPAPLS(ph)PLEVELDPEFEPQSRPR_
FOXO3	Phosphorylation	S253		2.510	_AVS(ph)MDNSNKYTK_
FOXO3	Phosphorylation	S284	4.138	6.011	_AALQTAPESADDS(ph)PSQLSK_
FOXO3	Phosphorylation	S421		1.295	_GS(ph)GLGSPTSSFNSTVFGPSSLNSLR_
FOXO3	Phosphorylation	S425		1.471	_GSGLGS(ph)PTSSFNSTVFGPSSLNSLR_
FOXP1	Phosphorylation	S442	1.013	0.678	_RYS(ph)DKYNVPISSADIAQNQEFYK_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
HES1	Ubiquitylation	K66		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K67		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K109	-0.891		_AQMTAALSTDPSVLGK(gl)YR_
HOXD13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
MID1	Ubiquitylation	K74	0.275	0.651	_GLDGLK(gl)R_
MID1	Phosphorylation	S96	-0.141	0.050	_ASVSGPNS(ph)PSETRR_
PTCH1	Ubiquitylation	K904		-0.390	_DKPIDISQLTK(gl)QR_
SHROOM3	Phosphorylation	S816		0.829	_TVS(ph)TSSTSGNDFEETK_
SHROOM3	Phosphorylation	S910	-0.534	-1.354	_DRPGS(ph)PESPLLDAPFSR_
SHROOM3	Phosphorylation	S1441	-0.680	-0.409	_EDS(ph)LPEESSAPDFANLK_
SIX1	Ubiquitylation	K53	0.475		_AK(gl)AVVAFHR_
SMAD2	Phosphorylation	T8	-0.896	-0.885	_(ac)SSILPFT(ph)PPVVK_
SMAD2	Ubiquitylation	K13	-0.058		_(ac)SSILPFTPPVVK(gl)R_
ZEB1	Ubiquitylation	K77	0.237		_FTSLK(gl)EHIK_
ZEB1	Ubiquitylation	K398	-0.697	0.131	_SEK(gl)LPEDLTVK_
ZEB1	Phosphorylation	S713	-0.669	-0.753	_NNDQPQSANANEPQDSTVNLQS(ph)PLK_
ZEB1	Phosphorylation	S1025		0.260	_REAEERDS(ph)TEQEEAGPEILSNEHVGAR_
ZEB1	Phosphorylation	T1026		0.260	_REAEERDS(ph)TEQEEAGPEILSNEHVGAR_