RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SMARCD3	2	0.790	-0.310	0.206			1.501	1.642
NIPBL	2	-0.180	-0.270
NIPBL	2	-0.180	-0.270		1.066	1.181
NIPBL	2	-0.180	-0.270	0.759			0.809	0.590
INSR	2	-0.850	0.830				1.143	0.785
MKL2	2	1.160	-0.390
FOXC1	1	-2.160	3.640	-1.217	-0.424	0.659
KAT6A	1	0.100	-0.500				0.334	0.461
TAB1	1	1.890	-0.670
TAB1	1	1.890	-0.670	1.657
SMO	1	-0.690	1.110		1.532
TTN	1	2.130	-1.190		0.133	0.277	0.244	0.213
NCOR2	1	1.850	-1.050
NCOR2	1	1.850	-1.050				0.037	-1.127
DVL2	0	-0.050	0.580
FKBP1A	0	-1.160	1.580
FKBP1A	0	1.040	-0.810
BMPR1A	0	0.020	-0.130
ZMIZ1	0	1.370	-0.740
COL4A3BP	0	-0.460	0.000
ALDH1A2	0	-1.010	0.740
TBX3	0	-0.160	0.160
DVL3	0	0.890	-0.290
MSX1	0	0.420	-0.450
HAND2	0	0.000	0.600
T	0	0.200	-0.340	-0.755
DLC1	0	-0.650	0.390
CHD7	0	0.220	-0.050	-1.168			0.026	0.297
FOXG1	0	-0.510	1.000	-1.217	-0.424	0.659
FOXG1	0	0.550	-0.250	-1.217	-0.424	0.659
NKX2-5	0	-0.150	1.230		0.174	0.236
NKX2-5	0	-0.150	1.230				-0.123
PTCH1	0	0.630	-0.690
EPHB4	0	1.130	-1.030

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
BMPR1A	Ubiquitylation	K232	-0.391	0.172	_TIAK(gl)QIQMVR_
BMPR1A	Ubiquitylation	K477	0.265	-0.134	_EVVCVK(gl)R_
CHD7	Phosphorylation	S557		-0.452	_VPVHQHS(ph)PSEPFLEKPVPDM(ox)TQVSGPNAQLVK_
CHD7	Phosphorylation	S1874	-0.088	-0.155	_TPFKDEIDEFANS(ph)PSEDKEESMEIHATGK_
CHD7	Phosphorylation	S2533		-0.792	_RTS(ph)LSAEDAEVTK_
CHD7	Phosphorylation	S2559	-0.345	-0.513	_NIPS(ph)PGQLDPDTR_
CHD7	Phosphorylation	S2956	0.383	-0.248	_DGETLEGS(ph)DAEESLDK_
COL4A3BP	Phosphorylation	S377	-0.986	-1.717	_SSS(ph)MSSIDLVSASDDVHR_
DLC1	Phosphorylation	S842		-0.139	_TGS(ph)FHGPGHISLR_
DLC1	Phosphorylation	S946		-0.497	_FSDEGDSDSALDSVSPCPSS(ph)PK_
DVL2	Ubiquitylation	K343	0.846	-1.366	_DIVHK(gl)PGPIVLTVAK_
DVL3	Phosphorylation	S112	-0.787		_TGGIGDS(ph)RPPSFHPHAGGGSQENLDNDTETDSLVSAQR_
DVL3	Phosphorylation	S125	-0.854	-0.531	_TGGIGDSRPPSFHPHAGGGS(ph)QENLDNDTETDSLVSAQR_
EPHB4	Ubiquitylation	K885	-1.394		_NPASLK(gl)IVAR_
EPHB4	Ubiquitylation	K960	0.133		_IGVTLAGHQKK(gl)_
FKBP1A	Ubiquitylation	K72	1.074		_RGQTCVVHYTGM(ox)LEDGK(gl)K_
FKBP1A	Ubiquitylation	K73	0.453		_RGQTCVVHYTGM(ox)LEDGK(gl)K_
FKBP1A	Ubiquitylation	K90	0.605	1.010	_FM(ox)LGK(gl)QEVIR_
FOXC1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXC1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXC1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXC1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXC1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
FOXG1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXG1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXG1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXG1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXG1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXG1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXG1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
HAND2	Ubiquitylation	K183	0.800	1.236	_K(gl)ELNEILK_
INSR	Ubiquitylation	K1022	-0.603		_EK(gl)ITLLR_
INSR	Ubiquitylation	K1047	0.305	0.711	_DIIK(gl)GEAETR_
INSR	Ubiquitylation	K1057	0.482	0.484	_VAVK(gl)TVNESASLR_
INSR	Ubiquitylation	K1352	1.606	2.754	_DGGSSLGFK(gl)R_
KAT6A	Phosphorylation	S473		2.569	_LFGS(ph)QEIMTEK_
KAT6A	Phosphorylation	S1001	-0.884	-0.411	_SSS(ph)PPILTKPTLK_
KAT6A	Phosphorylation	S1089	0.499	0.643	_RLS(ph)SQDVLR_
KAT6A	Phosphorylation	S1090	0.740	1.024	_RLSS(ph)QDVLR_
KAT6A	Phosphorylation	S1113		-0.700	_SKDEEEDEES(ph)DDADDTPILKPVSLLR_
MKL2	Phosphorylation	S552	1.517		_M(ox)TNNEDS(ph)LSPTSSTLSNLELDAAEKDR_
MKL2	Phosphorylation	S554	1.224	1.607	_MTNNEDSLS(ph)PTSSTLSNLELDAAEKDR_
MSX1	Phosphorylation	S154		0.148	_RLS(ph)PPACTLR_
NCOR2	Phosphorylation	S939	-0.637		_LLS(ph)PRPSLLTPTGDPR_
NCOR2	Phosphorylation	S943		-0.740	_LLSPRPS(ph)LLTPTGDPR_
NCOR2	Phosphorylation	S956	-0.223	-0.308	_ANAS(ph)PQKPLDLK_
NCOR2	Phosphorylation	S1023		-0.334	_S(ph)RSPAPPADKEAFAAEAQK_
NCOR2	Phosphorylation	S1025		1.950	_SRS(ph)PAPPADKEAFAAEAQK_
NCOR2	Phosphorylation	T1383	-1.746	-2.157	_EGT(ph)PPPPPPSR_
NCOR2	Phosphorylation	S1479	0.325	-0.132	_SLIGS(ph)PGR_
NCOR2	Phosphorylation	S1778		-0.687	_HSSSPLS(ph)PGGPTHLTKPTTTSSSER_
NCOR2	Phosphorylation	S1970	-0.321		_SGLEPAS(ph)SPSK_
NCOR2	Phosphorylation	S1971	-0.480		_SGLEPASS(ph)PSK_
NCOR2	Phosphorylation	S2223	-0.074	-1.140	_TSVLGGGEDGIEPVS(ph)PPEGMTEPGHSR_
NCOR2	Phosphorylation	S2258	-0.573	-0.210	_S(ph)PGNTSQPPAFFSK_
NCOR2	Phosphorylation	S2413		0.973	_AKS(ph)PAPGLASGDRPPSVSSVHSEGDCNR_
NIPBL	Phosphorylation	S178	0.767	1.039	_NNTAAETEDDES(ph)DGEDRGGGTSGVR_
NIPBL	Phosphorylation	S280	0.496	0.816	_SPQPVCS(ph)PAGSEGTPK_
NIPBL	Phosphorylation	S284	0.172	0.245	_SPQPVCSPAGS(ph)EGTPK_
NIPBL	Phosphorylation	S305	0.703		_GSRPPLILQSQSLPCS(ph)SPR_
NIPBL	Phosphorylation	S306	0.689	0.413	_GSRPPLILQSQSLPCSS(ph)PR_
NIPBL	Phosphorylation	S318	-0.415	-0.625	_DVPPDILLDS(ph)PERK_
NIPBL	Phosphorylation	S349	0.713	0.649	_AAMYDIIS(ph)SPSKDSTK_
NIPBL	Phosphorylation	S350	0.226	0.375	_AAMYDIISS(ph)PSK_
NIPBL	Phosphorylation	S553	2.102	1.878	_VDS(ph)QASITQDSDSIK_
NIPBL	Phosphorylation	T599	0.308		_STPENHPET(ph)PKKK_
NIPBL	Phosphorylation	T713	-0.940	-0.779	_GESRPET(ph)PKQK_
NIPBL	Ubiquitylation	K1628	0.366		_DAVTSK(gl)MDQGSIER_
NIPBL	Phosphorylation	S2658	0.412	0.260	_AITSLLGGGS(ph)PK_
NIPBL	Phosphorylation	S2672	0.868		_NNTAAETEDDES(ph)DGEDRGGGTSGSLR_
PTCH1	Ubiquitylation	K904		-0.390	_DKPIDISQLTK(gl)QR_
TAB1	Phosphorylation	S7	-0.170	0.140	_S(ph)LLQSEQQPSWTDDLPLCHLSGVGSASNR_
TAB1	Phosphorylation	S16	-0.138	0.069	_SLLQSEQQPS(ph)WTDDLPLCHLSGVGSASNR_
TAB1	Ubiquitylation	K186	-1.015		_SYSADGK(gl)GTESHPPEDSWLK_
TAB1	Ubiquitylation	K371	0.032		_LSQLGLDAGK(gl)IK_
TAB1	Ubiquitylation	K373		-0.007	_LSQLGLDAGKIK(gl)_
TBX3	Ubiquitylation	K466	-2.519		_EGTAPAK(gl)VEEAR_
TTN	Ubiquitylation	K27327	-0.283	0.183	_AGEVLK(gl)INADIAGR_
ZMIZ1	Ubiquitylation	K559	-0.155		_SVLQGLLKK(gl)_