RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TP53BP1	2	-1.490	1.970	-0.161	-0.160	0.174
TP53BP1	2	-1.490	1.970				0.638	0.558
RIF1	2	1.420	-1.180	-2.063	0.240	0.005	0.360	0.288
TERF2	2	-0.890	1.220		1.701	2.316	-0.080	0.502
CHEK1	2	-1.170	1.560
CHEK1	2	-1.170	1.560
CHEK2	2	0.530	0.100
H2AFX	2			-0.474	-0.395	0.182	0.824	0.499
H2AFX	2
SMC6	1	2.130	-1.240		0.240	0.345	-0.133	0.388
TERF2IP	1	0.500	-0.780	-0.491	1.304	2.217	-1.505	-0.760
TERF2IP	1	1.450	-1.010	-0.491	1.304	2.217	-1.505	-0.760
TERF2IP	1	1.580	-0.650	-0.491	1.304	2.217	-1.505	-0.760
NDNL2	1	-1.630	2.620				-1.210	-0.392
MRE11A	0	1.600	-0.730		0.145	0.420
MRE11A	0	1.600	-0.730	0.023			0.453	0.150
TELO2	0	-0.970	1.960	-0.671			-0.644	-0.259
ACD	0	0.480	-0.150
NSMCE4A	0	1.760	-0.910		0.559	0.531	-1.307	0.330
PTGES3	0	0.380	-0.180	0.733	0.303	-0.730	0.780	0.515
PTGES3	0	0.380	-0.180
RNF8	0	1.030	-0.670
DCLRE1B	0	0.400	-0.410
CDK2	0	-0.040	-0.300				-0.578	-0.797
CDK2	0	-0.040	-0.300	-0.202	-0.884	-0.107	-0.097	-0.501
POT1	0	0.280	-0.550
TERF1	0	-1.080	1.620
ATM	0						0.398	0.474
NSMCE2	0
NSMCE1	0	0.000	-0.240				-2.531	0.668
TNKS	0	0.420	0.660
ERCC4	0							1.257
BLM	0	1.270	-0.830	-0.850	-0.141	0.144	0.151	0.149
BLM	0	1.270	-0.830
SMC5	0	-0.480	0.030		-0.134	0.484	-0.303	0.216
EID3	0				0.559	0.531	-1.307	0.330

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACD	Phosphorylation	S111		-0.135	_ELILGSETPSS(ph)PR_
ACD	Phosphorylation	S399	-0.567	-0.012	_SSS(ph)QPSPAICSAPATLTPR_
ACD	Phosphorylation	S407		0.499	_SSS(ph)QPSPAICS(ph)APATLTPR_
ACD	Phosphorylation	S425		1.015	_TPSS(ph)PLQSCTPSLSPR_
ATM	Ubiquitylation	K307		-0.196	_GAYESTK(gl)WR_
ATM	Ubiquitylation	K331		-0.126	_GK(gl)YSSGFR_
ATM	Ubiquitylation	K385		-0.669	_ESSDYSVPCK(gl)R_
ATM	Ubiquitylation	K1101		-0.548	_LFQDTK(gl)GDSSR_
ATM	Ubiquitylation	K1109		-1.666	_LLK(gl)ALPLK_
ATM	Ubiquitylation	K1698		-1.026	_DASYTK(gl)ALK_
ATM	Ubiquitylation	K1738		-0.137	_SAAVTCLK(gl)NILATK_
ATM	Ubiquitylation	K2025		-1.497	_SIGEPDSLYGCGGGK(gl)MLQPITR_
BLM	Phosphorylation	S144		1.234	_KLEFSSS(ph)PDSLSTINDWDDMDDFDTSETSK_
CDK2	Ubiquitylation	K6	-0.130	-0.399	_(ac)MENFQK(gl)VEK_
CDK2	Ubiquitylation	K6	0.011	-0.784	_(ac)M(ox)EDYTK(gl)IEK_
CDK2	Phosphorylation	T14	0.429		_IGEGT(ph)YGVVYK_
CDK2	Phosphorylation	Y15	0.697	0.743	_IGEGTY(ph)GVVYK_
CDK2	Ubiquitylation	K20		0.272	_IGEGTYGVVYK(gl)AR_
CDK2	Ubiquitylation	K20	-0.327	-0.270	_IGEGTYGVVYK(gl)GR_
CDK2	Ubiquitylation	K24	0.366		_NK(gl)LTGEVVALKK_
CDK2	Ubiquitylation	K33		0.033	_NKLTGEVVALK(gl)K_
CDK2	Ubiquitylation	K33	0.736	0.239	_TTGQVVAMK(gl)K_
CDK2	Ubiquitylation	K34		0.542	_LTGEVVALKK(gl)_
CDK2	Ubiquitylation	K34		-0.306	_TTGQVVAMKK(gl)_
CDK2	Ubiquitylation	K58	0.312	-0.262	_EISLLK(gl)ELR_
CDK2	Ubiquitylation	K136		-0.468	_DLK(gl)PQNLLIDDK(gl)GTIK_
CDK2	Ubiquitylation	K145	0.161	-0.954	_DLKPQNLLIDDK(gl)GTIK_
CDK2	Ubiquitylation	K149		-0.038	_GTIK(gl)LADFGLAR_
CDK2	Ubiquitylation	K251	-0.047	-1.236	_WK(gl)PGSLASHVK_
CDK2	Ubiquitylation	K280	0.179	-1.210	_MLIYDPAK(gl)R_
CDK2	Ubiquitylation	K298	-1.907	-2.380	_QDFSK(gl)VVPPLDEDGR_
CHEK1	Ubiquitylation	K53	0.879		_AVDCPENIK(gl)K_
CHEK1	Ubiquitylation	K54	0.738		_AVDCPENIKK(gl)_
CHEK1	Phosphorylation	S296	-0.098	0.184	_VTS(ph)GGVSESPSGFSK_
CHEK1	Phosphorylation	S300		1.091	_VTSGGVS(ph)ESPSGFSK_
CHEK1	Phosphorylation	S302	1.750		_VTSGGVSES(ph)PSGFSK_
CHEK1	Phosphorylation	S317		1.903	_HIQSNLDFS(ph)PVNSASSEENVK_
CHEK1	Ubiquitylation	K399	-0.582		_ETCEK(gl)LGYQWK_
CHEK2	Phosphorylation	S260	3.670	3.632	_KFAIGS(ph)AR_
CHEK2	Ubiquitylation	K437		-0.826	_TQVSLK(gl)DQITSGK_
DCLRE1B	Ubiquitylation	K420		-1.848	_AVPFCESQK(gl)R_
H2AFX	Ubiquitylation	K116	-0.071		_ATIAGGGVIPHIHK(gl)SLIGK_
H2AFX	Ubiquitylation	K120	0.702	0.181	_K(gl)TSATVGPK_
H2AFX	Ubiquitylation	K121	1.548	0.818	_SLIGK(gl)K(gl)GQQK_
H2AFX	Ubiquitylation	K122	1.238	-0.400	_SLIGK(gl)K(gl)GQQK_
H2AFX	Ubiquitylation	K126	1.132		_KGQQK(gl)TV_
H2AFX	Ubiquitylation	K128	-0.411	0.117	_KTSATVGPK(gl)APSGGKK_
H2AFX	Phosphorylation	S140	1.817	1.205	_KATQAS(ph)QEY_
MRE11A	Ubiquitylation	K387	0.442		_FSQK(gl)FVDR_
NDNL2	Phosphorylation	S60		-0.694	_GPGGSQGS(ph)QGPSPQGAR_
NDNL2	Phosphorylation	S64	-1.141	-1.086	_GPGGSQGSQGPS(ph)PQGAR_
NDNL2	Ubiquitylation	K83	0.267		_SQK(gl)QLELK_
NDNL2	Ubiquitylation	K260		-0.249	_TNLETSK(gl)MK_
NDNL2	Ubiquitylation	K262		-0.249	_TNLETSK(gl)MK_
NSMCE1	Ubiquitylation	K143	-1.036		_K(gl)KEAEQVLQK_
NSMCE1	Ubiquitylation	K144	-1.036		_K(gl)KEAEQVLQK_
NSMCE2	Ubiquitylation	K183	1.381		_NK(gl)VCGHTYEEDAIVR_
POT1	Ubiquitylation	K469		-1.327	_LSNK(gl)FNSVIPVR_
PTGES3	Ubiquitylation	K7	-0.004	-0.431	_(ac)MQPASAK(gl)WYDRR_
PTGES3	Ubiquitylation	K33		0.224	_DVNVNFEK(gl)SK_
PTGES3	Ubiquitylation	K35	0.570	0.980	_SK(gl)LTFSCLGGSDNFK_
PTGES3	Ubiquitylation	K79	-0.294	0.182	_K(gl)GESGQSWPR_
PTGES3	Phosphorylation	S117	0.407	0.425	_DWEDDS(ph)DEDM(ox)SNFDR_
RIF1	Phosphorylation	S7	0.303	-0.353	_GQS(ph)PLAPLLETLEDPSASHGGQTDAYLTLTSR_
RIF1	Phosphorylation	S402		-1.985	_GASS(ph)PYGAPGTPR_
RIF1	Phosphorylation	T409		-1.985	_GASS(ph)PYGAPGT(ph)PR_
RIF1	Phosphorylation	S782		0.666	_VKS(ph)PQRPSDWSK_
RIF1	Phosphorylation	S1454	0.362	0.645	_S(ph)PLHIKDDVLPK_
RIF1	Phosphorylation	S1542	0.082	0.706	_RAS(ph)QGLLSSIENSESDSSEAKEEGSR_
RIF1	Phosphorylation	S1554		0.475	_RASQGLLSSIENSES(ph)DSSEAKEEGSR_
RIF1	Phosphorylation	S1579	0.402	0.564	_SNES(ph)VDIQDQEEK_
RIF1	Phosphorylation	S1616	1.504	1.400	_ATSEEDVSIKS(ph)PICEK_
RIF1	Phosphorylation	S1688	0.724	0.987	_RDS(ph)FDNCSLGESSK_
RIF1	Ubiquitylation	K1721	0.678		_TFQTLECQHK(gl)R_
RIF1	Phosphorylation	S1873	2.712	1.678	_NVS(ph)QESLETKEEKPEETPK_
RIF1	Phosphorylation	S2144	0.017	-0.130	_VEEPSQCLASGTAISELIIEDNNAS(ph)PQK_
RIF1	Phosphorylation	S2161	-0.390	-0.598	_ELDPSLVSANDS(ph)PSGMQTR_
RIF1	Phosphorylation	S2196	-0.223		_RSQEDEISS(ph)PVNK_
RIF1	Phosphorylation	S2205		-1.368	_RVS(ph)FADPIYQAGLADDIDRR_
RIF1	Phosphorylation	S2348	-0.973	-0.812	_TLPIRS(ph)PK_
RIF1	Phosphorylation	S2393	1.433	1.571	_SLS(ph)PDEER_
RNF8	Phosphorylation	S157	-0.377	-0.438	_KFS(ph)LDELAGPGAEGPSNLK_
SMC5	Ubiquitylation	K925		-1.832	_ENISQVK(gl)ER_
SMC6	Ubiquitylation	K107		-0.691	_GSSLK(gl)GFVK_
SMC6	Ubiquitylation	K157	0.258	-0.355	_LK(gl)SATGSVVSTR_
SMC6	Ubiquitylation	K201	0.273	0.873	_QFLQSK(gl)NEGDKYK_
TELO2	Ubiquitylation	K291		-0.932	_LLGNLVVK(gl)NK_
TELO2	Ubiquitylation	K293		-1.334	_LLGNLVVKNK(gl)_
TELO2	Ubiquitylation	K392		-0.874	_DSRDELLASMMAGVK(gl)CR_
TELO2	Ubiquitylation	K510	-0.286	-1.980	_SSK(gl)APAYVR_
TERF1	Phosphorylation	S11	-0.248	-0.254	_(ac)AEDVSSAAPS(ph)PR_
TERF2	Ubiquitylation	K307	0.329		_TLSGAQDSEAAFAK(gl)LDQK_
TERF2	Phosphorylation	S323	-1.051	-1.345	_DLVLPTQALPAS(ph)PALK_
TERF2IP	Phosphorylation	S36	0.199	-0.039	_DDGSSMSFYVRPS(ph)PAK_
TERF2IP	Phosphorylation	S154	0.255	-0.049	_S(ph)PSSVTGNALWK_
TERF2IP	Phosphorylation	S156	0.369	0.179	_ENARSPS(ph)SVTGNALWK_
TERF2IP	Phosphorylation	S157		0.410	_ENARSPSS(ph)VTGNALWK_
TERF2IP	Phosphorylation	S203	-0.351	-0.260	_YLLGDAPVS(ph)PSSQK_
TERF2IP	Ubiquitylation	K228	-0.229		_KAEEDPEAADSGEPQNK(gl)R_
TNKS	Ubiquitylation	K667	-0.766	-0.164	_AGDLETVK(gl)QLCSSQNVNCR_
TNKS	Ubiquitylation	K762		-1.426	_GK(gl)YEICK_
TNKS	Ubiquitylation	K771		-1.280	_LLLK(gl)HGADPTKK_
TNKS	Ubiquitylation	K812	-0.176	-1.693	_GDAALLDAAK(gl)K_
TNKS	Ubiquitylation	K813	-0.176	-1.693	_GDAALLDAAK(gl)K_
TNKS	Ubiquitylation	K1081		-0.151	_LIK(gl)GVER_
TP53BP1	Phosphorylation	S119	2.253	2.083	_TSS(ph)VLGMSVESAPAVEEEKGEELEQK_
TP53BP1	Phosphorylation	S265	0.355	0.274	_SEDM(ox)PFS(ph)PK_
TP53BP1	Phosphorylation	S280		-0.705	_EQLS(ph)AQELMESGLQIQKSPEPEVLSTQEDLFDQSNK_
TP53BP1	Phosphorylation	S287	-1.294	-1.483	_EQLSAQELMES(ph)GLQIQKSPEPEVLSTQEDLFDQSNK_
TP53BP1	Phosphorylation	S294	-1.218	-0.875	_S(ph)PEPEVLSTQEDLFDQSNK_
TP53BP1	Phosphorylation	S379		-0.210	_STPFIVPS(ph)SPTEQEGR_
TP53BP1	Phosphorylation	S380	-0.036	-0.182	_STPFIVPSS(ph)PTEQEGR_
TP53BP1	Phosphorylation	T382	-0.167		_STPFIVPSSPT(ph)EQEGR_
TP53BP1	Phosphorylation	S500	0.214	0.591	_NS(ph)PEDLGLSLTGDSCK_
TP53BP1	Phosphorylation	S525	-0.547		_LM(ox)LSTSEYSQS(ph)PK_
TP53BP1	Phosphorylation	S552	0.102	0.080	_IDEDGENTQIEDTEPMS(ph)PVLNSK_
TP53BP1	Phosphorylation	S580	1.645	1.855	_FVPAENDSILMNPAQDGEVQLS(ph)QNDDKTK_
TP53BP1	Phosphorylation	S771		0.885	_VDVS(ph)CEPLEGVEK_
TP53BP1	Phosphorylation	S831	2.288	2.726	_SGTAETEPVEQDSS(ph)QPSLPLVR_
TP53BP1	Phosphorylation	T922	1.634		_EGDIIPPLTGAT(ph)PPLIGHLK_
TP53BP1	Phosphorylation	S993		2.280	_LVS(ph)PETEASEESLQFNLEKPATGER_
TP53BP1	Phosphorylation	S1028	0.901	0.869	_NGSTAVAESVAS(ph)PQK_
TP53BP1	Phosphorylation	T1055	1.132	0.932	_SEDPPT(ph)TPIR_
TP53BP1	Phosphorylation	T1056	0.818	0.172	_SEDPPTT(ph)PIR_
TP53BP1	Phosphorylation	S1067	3.036	2.786	_GNLLHFPS(ph)SQGEEEKEK_
TP53BP1	Phosphorylation	S1068	2.467	3.424	_GNLLHFPSS(ph)QGEEEKEKLEGDHTIR_
TP53BP1	Phosphorylation	S1094		-1.038	_QSQQPMKPIS(ph)PVKDPVS(ph)PASQK_
TP53BP1	Phosphorylation	S1101		-1.038	_QSQQPMKPIS(ph)PVKDPVS(ph)PASQK_
TP53BP1	Phosphorylation	S1113	0.104	0.162	_MVIQGPS(ph)SPQGEAMVTDVLEDQK_
TP53BP1	Phosphorylation	S1114	0.438	0.116	_M(ox)VIQGPSS(ph)PQGEAM(ox)VTDVLEDQK_
TP53BP1	Phosphorylation	S1317	1.156	1.461	_TSS(ph)GTSLSAMHSSGSSGK_
TP53BP1	Phosphorylation	S1362	0.462	0.439	_GGPGKLS(ph)PR_
TP53BP1	Phosphorylation	S1426	-0.275	0.340	_ETAVPGPLGIEDIS(ph)PNLSPDDK_
TP53BP1	Phosphorylation	S1430	-0.558	-0.362	_ETAVPGPLGIEDISPNLS(ph)PDDK_
TP53BP1	Phosphorylation	S1460	-0.626	-0.602	_RS(ph)DSPEIPFQAAAGPSDGLDASSPGNSFVGLR_
TP53BP1	Phosphorylation	S1462	-1.029	-0.981	_RSDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR_
TP53BP1	Phosphorylation	S1618	-0.090		_AADIS(ph)LDNLVEGK_
TP53BP1	Phosphorylation	S1673	-0.238	-0.008	_LITS(ph)EEERS(ph)PAK_
TP53BP1	Phosphorylation	S1678	-0.242	-0.396	_LITSEEERS(ph)PAK_