RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
JUN	3	-0.930	0.930			-0.126
BRCA1	2	0.200	-0.140	0.433			0.018	0.146
CUL3	2	2.600	-1.300	0.182	-0.454	0.077	-0.259	-0.135
MAPK14	2	-0.160	-0.350
ATF2	2	-1.380	1.800
POU2F1	2	-0.480	0.830
MAPK9	1	0.110	-0.490
CCND1	1	-1.820	3.470
H2AFY	1	0.440	0.350	-0.717	0.162	0.382
JUND	1	0.270	0.190
KAT5	1	3.690	-1.200
RUVBL2	1	-2.210	5.080	0.796	0.479	0.807	0.364	0.491
CBFB	0	1.550	-0.600
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
MAPK3	0
HES1	0	-0.940	0.860
GADD45A	0	1.050	-0.170
CREB1	0	1.080	-0.800			-1.027
ARG1	0	-0.170	0.640					-4.678
DUSP1	0	0.290	-0.100
CDK4	0	1.930	-0.950
CDK4	0	1.930	-0.950				-0.510	0.013
RB1	0	1.180	-1.070		0.429	0.755
RB1	0	1.180	-1.070
CCNA2	0	-0.530	0.260
PRKCA	0	0.750	-0.690				0.349	0.585
PRKCA	0	0.750	-0.690
ATF3	0	0.740	-0.540
JUNB	0	0.350	-0.410
BCL2L1	0
BCL2	0	0.910	-0.740
CSRP2	0	-0.270	-0.140				-0.630
CSRP2	0	-0.270	-0.140	-0.167
NF1	0	1.000	-0.500				0.444	-0.190
SERPINB5	0	0.480	-0.860					-2.992

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATF2	Phosphorylation	T71	-1.263	-1.166	_NDSVIVADQTPT(ph)PTR_
ATF2	Phosphorylation	S90	2.624	2.389	_NCEEVGLFNELAS(ph)PFENEFKK_
ATF2	Phosphorylation	S112	1.025	1.118	_MPLDLS(ph)PLATPIIR_
ATF3	Phosphorylation	T162		1.218	_AQNGRT(ph)PEDERNLFIQQIK_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
BCL2L1	Ubiquitylation	K87	0.026		_EVIPMAAVK(gl)QALR_
BRCA1	Phosphorylation	S123	0.465	0.445	_KENNSPEHLKDEVS(ph)IIQSM(ox)GYR_
BRCA1	Phosphorylation	S753	2.662	4.077	_VSNNAEDPKDLMLS(ph)GER_
BRCA1	Phosphorylation	S1009	0.733	1.028	_KNLLEENFEEHSM(ox)S(ph)PER_
BRCA1	Phosphorylation	S1546	1.821	2.105	_NYPS(ph)QEELIK_
BRCA1	Phosphorylation	S1564		3.065	_VVDVEEQQLEES(ph)GPHDLTETSYLPR_
BRCA1	Phosphorylation	S1664		1.120	_EKPELTAS(ph)TER_
CBFB	Ubiquitylation	K28	0.486	0.548	_ECEIK(gl)YTGFR_
CCNA2	Ubiquitylation	K54		-0.746	_AALAVLK(gl)SGNPR_
CCNA2	Ubiquitylation	K68		-1.274	_GLAQQQRPK(gl)TR_
CCND1	Ubiquitylation	K33		-0.490	_AMLK(gl)AEETCAPSVSYFK_
CCND1	Ubiquitylation	K46	-1.016	-0.036	_AEETCAPSVSYFK(gl)CVQK_
CCND1	Ubiquitylation	K95	-0.733	-0.137	_FLSLEPVK(gl)K_
CCND1	Ubiquitylation	K96	-0.846	-0.155	_FLSLEPVKK(gl)_
CCND1	Ubiquitylation	K238		0.245	_VIK(gl)CDPDCLR_
CDK4	Ubiquitylation	K142	-0.552		_DLK(gl)PENILVTSGGTVK_
CDK4	Ubiquitylation	K211	-0.101		_K(gl)PLFCGNSEADQLGK_
CDK4	Phosphorylation	S236		0.095	_QDDS(ph)PSGASYGQDYDLS(ph)PSR_
CDK4	Phosphorylation	S249		0.095	_QDDS(ph)PSGASYGQDYDLS(ph)PSR_
CDK4	Ubiquitylation	K297	0.247	0.052	_ALQHSYLHK(gl)DEGNPE_
CDK4	Phosphorylation	S385		0.649	_HSSIS(ph)PVRLPLNSSLGAELSR_
CDK4	Phosphorylation	S420	0.004	-0.202	_ES(ph)KGSPVFLPR_
CDK4	Phosphorylation	S423	-0.155	-0.297	_GS(ph)PVFLPR_
CDK4	Phosphorylation	T514	0.364	0.570	_DSKPIALKEEIVT(ph)PK_
CDK4	Phosphorylation	S681	-2.532	-2.051	_HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK_
CDK4	Phosphorylation	S685		-2.729	_HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK_
CDK4	Phosphorylation	T692	-0.765	-1.849	_AIT(ph)PPQQPYK_
CDK4	Phosphorylation	S1082	-1.661	-0.980	_KETTSGTSTEPVKNS(ph)SPAPPQPAPGK_
CDK4	Phosphorylation	S1083	-1.093	-1.330	_NSS(ph)PAPPQPAPGK_
CDK4	Phosphorylation	T1244		-0.956	_RT(ph)PTMPQEEAAACPPHILPPEK_
CREB1	Phosphorylation	S271	-0.979	-1.450	_TAPTSTIAPGVVM(ox)ASS(ph)PALPTQPAEEAAR_
CREB1	Ubiquitylation	K333	1.343		_ALK(gl)DLYCHK_
CUL3	Ubiquitylation	K6		-0.611	_(ac)SNLSK(gl)GTGSR_
CUL3	Ubiquitylation	K236	1.952	0.663	_FLAENSASVYIKK(gl)_
CUL3	Ubiquitylation	K262	-0.525	-0.203	_STEEPIVK(gl)VVER_
CUL3	Ubiquitylation	K292	1.094	0.852	_NGK(gl)TEDLGCMYK_
CUL3	Ubiquitylation	K459		0.752	_LK(gl)TECGCQFTSK_
CUL3	Ubiquitylation	K680	-1.024		_IQTVAAK(gl)QGESDPERK_
DUSP1	Ubiquitylation	K97		-0.523	_SAALDGAK(gl)R_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
GADD45A	Ubiquitylation	K12	-0.515	0.281	_TLEEFSAGEQK(gl)TER_
GADD45A	Ubiquitylation	K29		0.092	_VGDALEEVLSK(gl)ALSQR_
H2AFY	Ubiquitylation	K116	-0.551	0.254	_GVTIASGGVLPNIHPELLAK(gl)K_
H2AFY	Ubiquitylation	K117	-0.333	-0.043	_GVTIASGGVLPNIHPELLAKK(gl)_
H2AFY	Ubiquitylation	K121	-0.646	-0.167	_GSK(gl)GKLEAIITPPPAKK_
H2AFY	Ubiquitylation	K123	-0.548	-0.558	_GK(gl)LEAIITPPPAKK_
H2AFY	Phosphorylation	T129	-1.725	-1.166	_LEAIIT(ph)PPPAK_
H2AFY	Ubiquitylation	K167	0.462		_QGEVSK(gl)AASADSTTEGTPADGFTVLSTK_
H2AFY	Phosphorylation	S170	0.502		_AAS(ph)ADSTTEGTPADGFTVLSTK_
H2AFY	Phosphorylation	T178	0.817	0.888	_AASADSTTEGT(ph)PADGFTVLSTK_
H2AFY	Ubiquitylation	K292	1.109		_CEELLEK(gl)TVK_
H2AFY	Ubiquitylation	K295	1.067	1.894	_TVK(gl)NCLALADDKK_
H2AFY	Ubiquitylation	K304	1.053	0.925	_NCLALADDK(gl)K_
H2AFY	Ubiquitylation	K305	0.941		_NCLALADDKK(gl)_
H2AFY	Ubiquitylation	K307	0.761	-0.193	_LK(gl)SIAFPSIGSGR_
H2AFY	Ubiquitylation	K323	0.614		_NGFPK(gl)QTAAQLILK_
HES1	Ubiquitylation	K66		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K67		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K109	-0.891		_AQMTAALSTDPSVLGK(gl)YR_
JUN	Phosphorylation	S58	-0.167	-1.247	_AKNS(ph)DLLTSPDVGLLK_
JUN	Phosphorylation	T62	2.545	1.674	_NSDLLT(ph)SPDVGLLK_
JUN	Phosphorylation	S63	2.030	1.458	_NSDLLTS(ph)PDVGLLK_
JUN	Ubiquitylation	K70	9.213		_NSDLLTSPDVGLLK(gl)_
JUN	Phosphorylation	S73	1.499	0.845	_LAS(ph)PELER_
JUN	Phosphorylation	S243	-0.642	-1.399	_LQALKEEPQTVPEMPGETPPLS(ph)PIDMESQER_
JUN	Ubiquitylation	K309	1.034	0.155	_EQVAQLK(gl)QK_
JUNB	Phosphorylation	T255		-0.205	_DAT(ph)PPVS(ph)PINMEDQER_
JUNB	Phosphorylation	S259		-0.205	_DAT(ph)PPVS(ph)PINMEDQER_
JUND	Phosphorylation	S90	2.088	1.448	_ADGAPSAAPPDGLLAS(ph)PDLGLLK_
JUND	Phosphorylation	S255	-1.629	-1.982	_LAALKDEPQTVPDVPSFGES(ph)PPLSPIDMDTQER_
JUND	Phosphorylation	S259		-0.855	_LAALKDEPQTVPDVPSFGESPPLS(ph)PIDMDTQER_
KAT5	Ubiquitylation	K230		-0.079	_MK(gl)NIECIELGR_
KAT5	Ubiquitylation	K274		-0.149	_SLK(gl)CLQR_
MAPK14	Phosphorylation	S2	3.221	3.623	_(ac)S(ph)QERPTFYR_
MAPK14	Phosphorylation	T180	0.958	1.087	_HTDDEM(ox)T(ph)GYVATR_
MAPK14	Phosphorylation	Y182	1.388	1.374	_HTDDEM(ox)TGY(ph)VATR_
MAPK14	Ubiquitylation	K249	0.073	-1.380	_LVGTPGAELLKK(gl)_
MAPK3	Phosphorylation	Y204	-0.807	-2.487	_IADPEHDHTGFLTEY(ph)VATR_
MAPK3	Ubiquitylation	K289		-0.608	_NYLQSLPSKTK(gl)_
MAPK9	Phosphorylation	Y185		3.533	_TACTNFMMTPY(ph)VVTR_
NF1	Ubiquitylation	K471		0.218	_MAPSLTFKEK(gl)_
NF1	Phosphorylation	S864		-0.458	_SNSGLATYS(ph)PPMGPVSER_
NF1	Phosphorylation	T2514		0.076	_GSEGYLAATYPTVGQT(ph)SPR_
NF1	Phosphorylation	S2515	0.071	0.316	_GSEGYLAATYPTVGQTS(ph)PR_
NF1	Phosphorylation	S2543	0.698	0.655	_S(ph)FDHLISDTK_
POU2F1	Phosphorylation	S8	1.971	2.219	_(ac)ADGGAAS(ph)QDESSAAAAAAADSR_
POU2F1	Phosphorylation	S408	0.932	1.562	_RTS(ph)IETNIR_
POU2F1	Phosphorylation	S471	-0.483	-0.496	_RINPPSSGGTSSS(ph)PIK_
PRKCA	Phosphorylation	S10	-0.650	0.036	_(ac)ADVFPGNDS(ph)TASQDVANR_
PRKCA	Phosphorylation	S13	-1.038	0.335	_(ac)ADVFPGNDSTAS(ph)QDVANR_
PRKCA	Phosphorylation	S226	0.693	0.415	_STLNPQWNES(ph)FTFK_
PRKCA	Ubiquitylation	K316	-0.522	-0.535	_LGPAGNK(gl)VISPSEDR_
RB1	Phosphorylation	S69	-3.602	-3.397	_TAATAAAAAAEPPAPPPPPPPEEDPEQDS(ph)GPEDLPLVR_
RB1	Ubiquitylation	K97	-0.546		_LK(gl)IPDHVR_
RB1	Phosphorylation	T388	0.005	0.116	_TLQTDSIDSFETQRT(ph)PR_
RB1	Phosphorylation	T405	-0.851	-0.901	_KSNLDEEVNVIPPHT(ph)PVR_
RB1	Phosphorylation	S820		-0.019	_S(ph)PYKFPSSPLR_
RB1	Ubiquitylation	K823	-2.214		_SPYK(gl)FPSSPLR_
RB1	Phosphorylation	S827	0.824	0.111	_FPSS(ph)PLR_
RB1	Phosphorylation	S839	-0.701	-1.045	_IPGGNIYIS(ph)PLKS(ph)PYK_
RB1	Ubiquitylation	K842		-0.751	_IPGGNIYISPLK(gl)SPYK_
RB1	Phosphorylation	S843	-0.701	-0.022	_IPGGNIYIS(ph)PLKS(ph)PYK_
RB1	Ubiquitylation	K846	-2.084		_SPYK(gl)ISEGLPTPTK_
RB1	Phosphorylation	T853	0.039	-0.555	_ISEGLPT(ph)PTKM(ox)T(ph)PR_
RB1	Ubiquitylation	K856	-1.350		_ISEGLPTPTK(gl)MTPR_
RB1	Phosphorylation	T858	-0.782	0.564	_ISEGLPT(ph)PTKMT(ph)PR_
RB1	Ubiquitylation	K879	-0.187		_FQK(gl)INQMVCNSDR_
RUVBL2	Ubiquitylation	K9	-0.203	-0.294	_(ac)ATVTATTK(gl)VPEIRDVTR_
RUVBL2	Ubiquitylation	K160	0.331		_VGK(gl)LTLK_
RUVBL2	Ubiquitylation	K186	-0.554		_DK(gl)VQAGDVITIDK_
RUVBL2	Ubiquitylation	K234	-0.191	-0.742	_FVQCPDGELQK(gl)R_
RUVBL2	Ubiquitylation	K365	-0.355	-0.601	_LLIVSTTPYSEK(gl)DTK_
RUVBL2	Ubiquitylation	K368		-0.345	_LLIVSTTPYSEKDTK(gl)QILR_
RUVBL2	Ubiquitylation	K417		-1.196	_K(gl)GTEVQVDDIK(gl)R_
RUVBL2	Ubiquitylation	K427	0.479	0.403	_K(gl)GTEVQVDDIK(gl)R_