RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SMARCD3	2	0.790	-0.310	0.206			1.501	1.642
PLK1	2			3.098	-0.387	0.212	-1.949	-0.610
ITCH	1	1.000	-0.610	-0.346			0.023	0.613
DICER1	1	-0.810	0.800	1.748			-0.207	-0.634
WWP1	1	-1.400	1.340
WWP1	1	0.850	-1.030
WWP1	1	-1.400	1.340	-0.346			0.023	0.613
WWP1	1	0.850	-1.030	-0.346			0.023	0.613
YWHAQ	1	-0.260	0.670	0.606	0.369	-0.163	0.594	0.478
CABLES1	1	-1.170	2.570
PML	1	-0.420	0.350		-0.244	0.322
DST	1	0.080	-0.480
DST	1	0.080	-0.480		0.991	1.748
DST	1	0.080	-0.480	0.105			-0.034	0.278
DST	1	0.080	-0.480				0.796	0.236
AEN	1	2.220	-1.070
NOC2L	1	1.010	-0.760	-0.322	0.179	0.516	0.566	0.288
NOC2L	1	1.010	-0.760
FAS	0	1.380	-1.070
FAS	0	1.380	-1.070
TRAF4	0	-0.140	0.360
BAX	0	1.590	-1.170				0.811	0.359
ABL1	0	0.670	-0.070
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
JAG1	0	-0.260	0.070
IKBKB	0	0.400	0.610
HBP1	0	-1.130	1.580
OGG1	0	-0.290	1.020
GADD45A	0	1.050	-0.170
CDKN1A	0	1.080	-0.750
FLOT2	0	-0.080	0.520	-0.953			0.204	0.290
MDM2	0	-0.210	0.080
PMAIP1	0	0.570	-0.670
CDKN2A	0	-0.080	-0.260	-0.556		-1.080	-3.270	-1.110
SSRP1	0	0.790	-0.850	0.010	1.037	1.489	0.767	0.505
FDXR	0	-1.170	1.420				1.422
DHRS3	0	0.800	-0.900
PRKCD	0	0.250	0.070				0.578	0.427
EVPL	0	-1.190	1.640					-4.987
SP1	0			0.404			0.333	0.650
ADA	0	0.340	-0.830
SERPINB5	0	0.480	-0.860					-2.992
CHUK	0			-0.480

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ABL1	Phosphorylation	S1083	-1.131	-0.857	_GQGESDPLDHEPAVS(ph)PLLPR_
ABL1	Phosphorylation	S1134		0.293	_SSS(ph)FREMDGQPER_
ABL1	Phosphorylation	S1232	0.821	0.183	_SCS(ph)ASCVPHGAK_
ADA	Ubiquitylation	K312		0.123	_STLDTDYQMTK(gl)R_
AEN	Ubiquitylation	K109		-1.520	_ASGPLPSK(gl)CVAIDCEMVGTGPR_
BAX	Ubiquitylation	K57		-1.174	_MGGEAPELALDPVPQDASTK(gl)K_
BAX	Ubiquitylation	K58	-1.718	-1.174	_MGGEAPELALDPVPQDASTKK(gl)_
BAX	Ubiquitylation	K64	0.708	1.306	_LSECLK(gl)R_
CABLES1	Phosphorylation	S290	0.347	0.381	_S(ph)SLETLEDIEENAPLRR_
CABLES1	Phosphorylation	S291	0.614	0.568	_SS(ph)LETLEDIEENAPLRR_
CABLES1	Phosphorylation	T415		0.987	_RNT(ph)IDSTSSFSQFR_
CDKN1A	Ubiquitylation	K188	-2.505	-1.077	_QTSMTDFYHSK(gl)R_
CHUK	Ubiquitylation	K296		-1.637	_GGPVDLTLK(gl)QPR_
DHRS3	Ubiquitylation	K299	-0.098	0.200	_FSGTYTCMNTFK(gl)GR_
DST	Phosphorylation	S1382	0.207	1.088	_AMVDSQQKS(ph)PVK_
DST	Phosphorylation	S7512		0.381	_RGS(ph)DASDFDISEIQSVCSDVETVPQTHRPTPR_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
EVPL	Ubiquitylation	K1087	0.203	0.013	_ELLALEK(gl)R_
FAS	Phosphorylation	S236	-0.027		_ENQGS(ph)HESPTLNPETVAINLSDVDLSK_
FAS	Phosphorylation	S239	0.266		_ENQGSHES(ph)PTLNPETVAINLSDVDLSK_
FAS	Ubiquitylation	K343	1.126		_IQTIILK(gl)DITSDSENSNFR_
GADD45A	Ubiquitylation	K12	-0.515	0.281	_TLEEFSAGEQK(gl)TER_
GADD45A	Ubiquitylation	K29		0.092	_VGDALEEVLSK(gl)ALSQR_
HBP1	Ubiquitylation	K426		-1.246	_NCGSPGSSQLSSNSLYAK(gl)AVK_
IKBKB	Ubiquitylation	K106	0.253		_K(gl)YLNQFENCCGLR_
IKBKB	Phosphorylation	S672	0.670	0.244	_GPVSGS(ph)PDSMNASR_
ITCH	Ubiquitylation	K66	-0.890		_WK(gl)QPLTVIVTPVSK_
ITCH	Ubiquitylation	K350	0.049	0.396	_VYYVDHVEK(gl)R_
ITCH	Ubiquitylation	K446	-1.514	-1.539	_EFDPLGPLPPGWEK(gl)R_
ITCH	Ubiquitylation	K478	-1.265		_SQGQLNEK(gl)PLPEGWEMR_
ITCH	Ubiquitylation	K513	-0.564	1.593	_TGK(gl)SALDNGPQIAYVR_
ITCH	Ubiquitylation	K861	-0.810	0.596	_VGK(gl)ENWLPR_
JAG1	Ubiquitylation	K1142	-0.783		_HGANTVPIKDYENK(gl)_
MDM2	Phosphorylation	S166	0.576	1.068	_AIS(ph)ETEENSDELSGER_
MDM2	Ubiquitylation	K334		-0.872	_ENWLPEDK(gl)GK_
MDM2	Ubiquitylation	K336		-0.872	_ENWLPEDK(gl)GK_
MDM2	Ubiquitylation	K363		0.883	_LENSTQAEEGFDVPDCK(gl)K_
MDM2	Ubiquitylation	K364		0.883	_LENSTQAEEGFDVPDCK(gl)K_
MDM2	Ubiquitylation	K473		0.806	_NK(gl)PCPVCR_
NOC2L	Phosphorylation	S49	-0.694	-0.494	_EAARS(ph)PDKPGGSPSASR_
NOC2L	Phosphorylation	S56	-1.635	-0.706	_SPDKPGGS(ph)PSASRR_
NOC2L	Ubiquitylation	K144		2.425	_K(gl)NSVPVTVAMVER_
NOC2L	Ubiquitylation	K226	-0.886	-0.310	_LLFGK(gl)VAK_
NOC2L	Ubiquitylation	K245		-1.994	_MLQPSSSPLWGK(gl)LR_
NOC2L	Ubiquitylation	K516		-0.170	_LSNVNLQEK(gl)AYR_
NOC2L	Ubiquitylation	K562		-0.563	_ECK(gl)VANYCR_
NOC2L	Ubiquitylation	K576	-1.085		_QVQQLLGK(gl)VQENSAYICSR_
NOC2L	Ubiquitylation	K637	0.193		_EIQLEISGK(gl)ER_
NOC2L	Ubiquitylation	K649	-1.048	-0.355	_LEDLNFPEIK(gl)R_
NOC2L	Phosphorylation	S672	0.375	0.458	_DLFDLNS(ph)SEEDDTEGFSER_
NOC2L	Phosphorylation	S673	0.408	0.312	_DLFDLNSS(ph)EEDDTEGFSER_
OGG1	Ubiquitylation	K289		-2.026	_DYSWHPTTSQAK(gl)GPSPQTNK_
PLK1	Ubiquitylation	K358	-2.258		_EK(gl)EEPVVR_
PLK1	Ubiquitylation	K574	1.656		_LSLLEEYGCCK(gl)ELASR_
PMAIP1	Ubiquitylation	K35	-1.475	0.286	_RFGDK(gl)LNFR_
PMAIP1	Ubiquitylation	K41	-1.597	0.340	_QK(gl)LLNLISK_
PMAIP1	Ubiquitylation	K48	-2.007	-0.586	_LLNLISK(gl)_
PML	Ubiquitylation	K394	0.515	0.360	_LQDLSSCITQGK(gl)DAAVSKK_
PML	Phosphorylation	S403		3.141	_KAS(ph)PEAASTPRDPIDVDLPEEAER_
PML	Ubiquitylation	K476	-0.403	-0.735	_GPSYGEDVSNTTTAQK(gl)R_
PML	Phosphorylation	S504	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S505	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S518	-1.632	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S527	-1.392	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S530	0.466	0.093	_S(ph)PVIGSEVFLPNSNHVASGAGEAEER_
PML	Ubiquitylation	K623		-0.784	_IDNETQK(gl)ISQLAAVNR_
PRKCD	Ubiquitylation	K138	-0.141		_SEDEAK(gl)FPTMNR_
PRKCD	Ubiquitylation	K222	0.185	0.658	_DTIFQK(gl)ER_
PRKCD	Phosphorylation	S302	-0.240	-0.222	_S(ph)DSASSEPVGIYQGFEK_
PRKCD	Phosphorylation	S304	0.378	0.289	_RSDS(ph)ASSEPVGIYQGFEK_
PRKCD	Phosphorylation	S506	-0.213	0.200	_AS(ph)TFCGTPDYIAPEILQGLK_
PRKCD	Phosphorylation	T507	-0.149	0.240	_AS(ph)TFCGTPDYIAPEILQGLK_
PRKCD	Ubiquitylation	K641	-2.000		_DYSNFDQEFLNEK(gl)AR_
PRKCD	Phosphorylation	S645	0.577	0.832	_ARLS(ph)YSDK_
PRKCD	Phosphorylation	S647	0.886	0.853	_ARLSYS(ph)DK_
SP1	Phosphorylation	S2	0.834	1.114	_(ac)S(ph)DQDHSMDEMTAVVK_
SP1	Phosphorylation	S7	0.586	0.217	_(ac)SDQDHS(ph)MDEMTAVVK_
SP1	Phosphorylation	S56	-0.154		_SSSTGSSSSTGGGGQES(ph)QPSPLALLAATCSR_
SP1	Phosphorylation	S59	-0.217	-0.135	_SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR_
SSRP1	Ubiquitylation	K33	0.341		_QGIIFK(gl)NSK_
SSRP1	Ubiquitylation	K36		0.839	_QGIIFKNSK(gl)_
SSRP1	Ubiquitylation	K67	0.956		_LLTK(gl)NGHVYK_
SSRP1	Ubiquitylation	K105	0.302	-0.067	_DLCVK(gl)GWNWGTVK_
SSRP1	Phosphorylation	S437	0.313	1.110	_EGM(ox)NPS(ph)YDEYADSDEDQHDAYLER_
SSRP1	Phosphorylation	Y441		0.366	_EGMNPSYDEY(ph)ADSDEDQHDAYLER_
SSRP1	Phosphorylation	S444	0.152	0.278	_EGMNPSYDEYADS(ph)DEDQHDAYLER_
SSRP1	Ubiquitylation	K661	0.769		_QLSESFK(gl)SK_
TRAF4	Phosphorylation	S426		0.249	_GS(ph)LDESSLGFGYPK_
WWP1	Ubiquitylation	K66	-0.890		_WK(gl)QPLTVIVTPVSK_
WWP1	Ubiquitylation	K328	-0.364	0.487	_SSSAFEAAK(gl)SR_
WWP1	Ubiquitylation	K350	0.049	0.396	_VYYVDHVEK(gl)R_
WWP1	Ubiquitylation	K446	-1.514	-1.539	_EFDPLGPLPPGWEK(gl)R_
WWP1	Ubiquitylation	K478	-1.265		_SQGQLNEK(gl)PLPEGWEMR_
WWP1	Ubiquitylation	K513	-0.564	1.593	_TGK(gl)SALDNGPQIAYVR_
WWP1	Ubiquitylation	K536	-1.895	1.126	_SSVTK(gl)GGPQIAYER_
WWP1	Ubiquitylation	K861	-0.810	0.596	_VGK(gl)ENWLPR_
YWHAQ	Ubiquitylation	K3		0.827	_(ac)MEK(gl)TELIQK_
YWHAQ	Ubiquitylation	K9	0.588	0.253	_(ac)MEKTELIQK(gl)AK_
YWHAQ	Ubiquitylation	K11	0.561	0.388	_AK(gl)LAEQAER_
YWHAQ	Ubiquitylation	K27	-0.849		_YDDMATCMK(gl)AVTEQGAELSNEER_
YWHAQ	Ubiquitylation	K49	0.260	0.469	_NLLSVAYK(gl)NVVGGR_
YWHAQ	Ubiquitylation	K68	0.288		_VISSIEQK(gl)TDTSDKK_
YWHAQ	Ubiquitylation	K74	0.305		_TDTSDK(gl)KLQLIK_
YWHAQ	Ubiquitylation	K75	0.253		_TDTSDKK(gl)LQLIK_
YWHAQ	Ubiquitylation	K80	0.655	1.500	_LQLIK(gl)DYR_
YWHAQ	Ubiquitylation	K85	0.110		_EK(gl)VESELR_
YWHAQ	Ubiquitylation	K120	0.512	0.946	_VFYLK(gl)MK_
YWHAQ	Ubiquitylation	K122	0.426	0.859	_MK(gl)GDYFR_
YWHAQ	Ubiquitylation	K158	-0.439	-0.371	_K(gl)EMQPTHPIR_