RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RPS27A	4	-1.330	2.560	-0.309	0.131	-0.009
UBA52	3	-1.260	2.180	-0.309	0.131	-0.009
UBA52	3	-1.260	2.180
SMARCD3	2	0.790	-0.310	0.206			1.501	1.642
ATF2	2	-1.380	1.800
CUL1	1	0.630	-0.610	-0.314	0.662	2.069	0.342	0.118
MED1	1	0.780	-0.520				-1.530	-0.219
NCOA2	1	-0.210	-0.230
CREBBP	0	0.840	-0.950				-3.889	-1.071
FBXL3	0	-0.990	1.600
SREBF1	0	0.540	-0.490
SREBF1	0	0.540	-0.490
MEF2C	0	-0.980	1.550
MEF2C	0	-0.980	1.550
NCOA1	0	1.240	-0.460
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
HIF1A	0	-0.480	0.400
TBL1X	0	-0.240	-0.140	0.090	-3.400	0.909	0.103	0.241
NAMPT	0	-0.050	-0.460	0.270				-2.796
SKP1	0	1.470	-0.970		-1.305	-0.243	-0.093	0.054
SKP1	0	1.470	-0.970	-0.472
NR3C1	0	0.390	-0.260
MEF2D	0	-0.080	-0.210
MEF2D	0	-0.080	-0.210
MEF2D	0	-0.080	-0.210
CREB1	0	1.080	-0.800			-1.027
NCOA3	0	0.000	-0.330
BHLHE40	0	-0.330	0.040
TGS1	0	0.840	-0.360
NCOR1	0	-0.820	1.130	-0.827			-0.215	0.037
CSNK1D	0	0.340	-0.060		0.150	0.527
CSNK1D	0	0.340	-0.060
CSNK1D	0	0.340	-0.060	1.237			-0.682	-0.148
BTRC	0	-0.780	0.690	0.532			-1.791	0.313
HDAC3	0	-0.790	1.070
TBL1XR1	0	-0.370	0.750	0.090	-3.400	0.909	0.103	0.241
PER1	0	1.020	-0.450
NCOA6	0	-0.430	0.770				-0.167	0.096
CSNK1E	0	-0.170	-0.440		0.150	0.527
CSNK1E	0	-0.170	-0.440	1.237			-0.682	-0.148

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATF2	Phosphorylation	T71	-1.263	-1.166	_NDSVIVADQTPT(ph)PTR_
ATF2	Phosphorylation	S90	2.624	2.389	_NCEEVGLFNELAS(ph)PFENEFKK_
ATF2	Phosphorylation	S112	1.025	1.118	_MPLDLS(ph)PLATPIIR_
BHLHE40	Ubiquitylation	K159		-0.521	_EVLQYLAK(gl)HENTR_
BHLHE40	Ubiquitylation	K262		-1.135	_SEQPCFK(gl)SDHGR_
BHLHE40	Phosphorylation	S383		-2.162	_LPS(ph)PLPAHPSVDSSVLLQALKPIPPLNLETKD_
BTRC	Ubiquitylation	K466		0.325	_IVSGAYDGKIK(gl)_
CREB1	Phosphorylation	S271	-0.979	-1.450	_TAPTSTIAPGVVM(ox)ASS(ph)PALPTQPAEEAAR_
CREB1	Ubiquitylation	K333	1.343		_ALK(gl)DLYCHK_
CREBBP	Phosphorylation	S2093	0.037	0.097	_SIS(ph)PSALQDLLR_
CSNK1D	Ubiquitylation	K43		-1.168	_LECVK(gl)TK_
CSNK1D	Ubiquitylation	K45		-1.168	_LECVK(gl)TK_
CSNK1D	Ubiquitylation	K140	-0.969		_DVKPDNFLMGLGK(gl)K_
CSNK1D	Ubiquitylation	K141	-0.969	-0.720	_DVKPDNFLMGLGKK(gl)_
CSNK1D	Phosphorylation	S350	-0.790		_LRGTQEVAPPTPLTPTS(ph)HTANTSPRPVSGM(ox)ER_
CSNK1D	Phosphorylation	S363	-0.662	-0.352	_IQPAGNTS(ph)PR_
CSNK1D	Phosphorylation	S382	-0.647	-0.568	_GAPVNIS(ph)SSDLTGR_
CSNK1D	Phosphorylation	S389	0.394	0.817	_GAPANVS(ph)SSDLTGR_
CSNK1E	Ubiquitylation	K43		-1.168	_LECVK(gl)TK_
CSNK1E	Ubiquitylation	K45		-1.168	_LECVK(gl)TK_
CSNK1E	Ubiquitylation	K140	-0.969		_DVKPDNFLMGLGK(gl)K_
CSNK1E	Ubiquitylation	K141	-0.969	-0.720	_DVKPDNFLMGLGKK(gl)_
CSNK1E	Phosphorylation	S363	-0.662	-0.352	_IQPAGNTS(ph)PR_
CSNK1E	Phosphorylation	S389	0.394	0.817	_GAPANVS(ph)SSDLTGR_
CUL1	Ubiquitylation	K262	0.119		_ESTEFLQQNPVTEYMK(gl)K_
CUL1	Ubiquitylation	K263	0.119	-0.055	_ESTEFLQQNPVTEYMK(gl)K_
CUL1	Ubiquitylation	K410	0.250	0.326	_FINNNAVTK(gl)MAQSSSK_
CUL1	Ubiquitylation	K417		0.761	_MAQSSSK(gl)SPELLAR_
CUL1	Ubiquitylation	K468	1.237		_FYAK(gl)MLAK_
CUL1	Ubiquitylation	K503		0.665	_QACGFEYTSK(gl)LQR_
CUL1	Ubiquitylation	K769	0.292		_VDGEK(gl)DTYSYLA_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
FBXL3	Ubiquitylation	K321		-0.415	_SVSK(gl)DVLGR_
HDAC3	Phosphorylation	S424		-0.354	_GPEENYSRPEAPNEFYDGDHDNDKES(ph)DVEI_
HIF1A	Ubiquitylation	K10		-1.686	_(ac)MEGAGGANDK(gl)K_
HIF1A	Ubiquitylation	K11		-1.686	_(ac)MEGAGGANDK(gl)K_
HIF1A	Ubiquitylation	K173		-0.662	_MK(gl)CTLTSR_
HIF1A	Ubiquitylation	K186		-0.590	_TMNIK(gl)SATWK_
HIF1A	Ubiquitylation	K252		-0.784	_HSLDM(ox)K(gl)FSYCDER_
HIF1A	Ubiquitylation	K371		-0.508	_PVESSDMK(gl)MTQLFTK_
HIF1A	Ubiquitylation	K378		-0.077	_MTQLFTK(gl)VESEDTSSLFDK_
HIF1A	Ubiquitylation	K390		-0.348	_VESEDTSSLFDK(gl)LKK_
HIF1A	Ubiquitylation	K392		-0.546	_VESEDTSSLFDKLK(gl)_
HIF1A	Ubiquitylation	K393		-0.451	_VESEDTSSLFDKLKK(gl)_
HIF1A	Ubiquitylation	K710		-1.696	_TTVPEEELNPK(gl)ILALQNAQR_
MED1	Phosphorylation	S664		3.368	_DNPAQDFSTLYGSS(ph)PLER_
MED1	Phosphorylation	S771	-1.422		_LSS(ph)SDSIGPDVTDILSDIAEEASKLPSTSDDCPAIGTPLR_
MED1	Phosphorylation	T1051	-1.201	-1.247	_SQT(ph)PPGVATPPIPK_
MED1	Phosphorylation	T1057		-1.294	_SQT(ph)PPGVAT(ph)PPIPK_
MED1	Phosphorylation	S1155	0.689		_NSSQSGGKPGS(ph)SPITK_
MED1	Phosphorylation	S1156	0.829	1.055	_NSSQSGGKPGSS(ph)PITK_
MED1	Phosphorylation	S1192		-0.792	_PSSLM(ox)NPSLSKPNIS(ph)PSHSRPPGGSDK_
MED1	Phosphorylation	S1223	1.061	1.013	_AKS(ph)PISSGSGGSHM(ox)SGTSSSSGM(ox)K_
MED1	Phosphorylation	S1433	-0.191		_NYGS(ph)PLISGSTPK_
MEF2C	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2C	Phosphorylation	S240	0.008	0.302	_NS(ph)PGLLVSPGNLNK_
MEF2C	Phosphorylation	S406	0.272	0.338	_SEPVS(ph)PPRDR_
MEF2D	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2D	Phosphorylation	S184	-1.118	-1.050	_VIPAKS(ph)PPPPTHSTQLGAPSR_
MEF2D	Phosphorylation	S185	0.259	-0.467	_LLS(ph)PQQPALQR_
MEF2D	Phosphorylation	S377	0.418	0.181	_SEPVS(ph)PSRER_
NAMPT	Ubiquitylation	K228	1.042		_GTDTVAGLALIK(gl)K_
NAMPT	Ubiquitylation	K330	-0.016		_VLEILGK(gl)K_
NCOA1	Phosphorylation	S22	0.503	0.810	_KGS(ph)PCDTLASSTEK_
NCOA2	Phosphorylation	S699	-0.159	-0.104	_LLQDSSS(ph)PVDLAK_
NCOA2	Phosphorylation	S771	1.654	0.621	_LDS(ph)KTDPASNTK_
NCOA3	Phosphorylation	S861	-0.217	-0.429	_AVS(ph)LDSPVSVGSSPPVK_
NCOA3	Phosphorylation	S870	-0.416	-0.360	_AVS(ph)LDSPVSVGS(ph)SPPVK_
NCOA3	Phosphorylation	S1333		-0.364	_VSS(ph)PPNAMMSSR_
NCOR1	Phosphorylation	S1195	-0.029	0.716	_MPIEDS(ph)SPEKGREEAASK_
NCOR1	Phosphorylation	S1196	0.087	0.141	_MPIEDSS(ph)PEKGR_
NCOR1	Phosphorylation	S1472	0.700	0.536	_AQLS(ph)PGIYDDTSAR_
NCOR1	Phosphorylation	S1977	-0.959	-0.974	_YETPSDAIEVIS(ph)PASSPAPPQEK_
NCOR1	Ubiquitylation	K1998		-2.086	_LQTYQPEVVK(gl)ANQAENDPTR_
NCOR1	Phosphorylation	S2120	0.148	0.154	_VS(ph)PENLVDK_
NCOR1	Phosphorylation	S2151	-1.006	-0.922	_SHVSSEPYEPIS(ph)PPQVPVVHEK_
NCOR1	Phosphorylation	S2184	0.120	0.226	_S(ph)PGSISYLPSFFTK_
NCOR1	Phosphorylation	S2187		0.396	_SPGS(ph)ISYLPSFFTK_
NR3C1	Phosphorylation	S45	-0.810	-0.399	_VSASS(ph)PSLAVASQSDSK_
NR3C1	Phosphorylation	S226		-0.070	_SDLLIDENCLLS(ph)PLAGEDDSFLLEGNSNEDCKPLILPDTKPK_
NR3C1	Ubiquitylation	K696		0.338	_MTYIK(gl)ELGK_
PER1	Ubiquitylation	K295		-1.272	_DFTQEK(gl)SVFCR_
RPS27A	Ubiquitylation	K6	1.066	0.995	_MQIFVK(gl)TLTGK_
RPS27A	Ubiquitylation	K11	-0.488	-0.081	_TLTGK(gl)TITLEVEPSDTIENVKAK(gl)_
RPS27A	Ubiquitylation	K27	-0.882	-0.159	_TLTGK(gl)TITLEVEPSDTIENVK(gl)AK_
RPS27A	Ubiquitylation	K29	-1.087	-1.029	_AK(gl)IQDK(gl)EGIPPDQQR_
RPS27A	Ubiquitylation	K33	-0.736	-0.407	_IQDK(gl)EGIPPDQQR_
RPS27A	Ubiquitylation	K48	-0.062	0.315	_LIFAGK(gl)QLEDGRTLSDYNIQK_
RPS27A	Phosphorylation	S57	1.909	0.548	_TLS(ph)DYNIQK_
RPS27A	Ubiquitylation	K63	0.276	0.299	_TLSDYNIQK(gl)ESTLHLVLR_
RPS27A	Ubiquitylation	K99	0.109	2.111	_VK(gl)LAVLK_
RPS27A	Ubiquitylation	K104	0.674	2.102	_LAVLK(gl)YYK_
RPS27A	Ubiquitylation	K107	2.949	3.611	_YYK(gl)VDENGK(gl)ISR_
RPS27A	Ubiquitylation	K113	1.572	3.672	_YYK(gl)VDENGK(gl)ISR_
RPS27A	Ubiquitylation	K152	4.747	4.970	_CCLTYCFNK(gl)PEDK_
RPS27A	Ubiquitylation	K156	4.809		_CCLTYCFNKPEDK(gl)_
SKP1	Ubiquitylation	K130	0.138	0.140	_GK(gl)TPEEIRK_
SKP1	Phosphorylation	T131	-0.024	-0.138	_GKT(ph)PEEIRK_
SKP1	Ubiquitylation	K142	0.165	0.894	_TFNIK(gl)NDFTEEEEAQVRK_
SKP1	Ubiquitylation	K155	-0.096	0.069	_K(gl)ENQWCEEK_
SKP1	Ubiquitylation	K163	0.109	-0.020	_ENQWCEEK(gl)_
SREBF1	Ubiquitylation	K321		-0.637	_LAAGSK(gl)APASAQSR_
SREBF1	Ubiquitylation	K579	-1.649	0.673	_K(gl)QADLDLAR_
TBL1X	Ubiquitylation	K102	-0.183		_DK(gl)LAQQQAAAAAAAAAAASQQGSAK_
TBL1XR1	Ubiquitylation	K102	-0.183		_DK(gl)LAQQQAAAAAAAAAAASQQGSAK_
TGS1	Phosphorylation	S89		0.022	_GIGLDESELDS(ph)EAELMR_
UBA52	Ubiquitylation	K6	1.066	0.995	_MQIFVK(gl)TLTGK_
UBA52	Ubiquitylation	K11	-0.488	-0.081	_TLTGK(gl)TITLEVEPSDTIENVKAK(gl)_
UBA52	Ubiquitylation	K27	-0.882	-0.159	_TLTGK(gl)TITLEVEPSDTIENVK(gl)AK_
UBA52	Ubiquitylation	K29	-1.087	-1.029	_AK(gl)IQDK(gl)EGIPPDQQR_
UBA52	Ubiquitylation	K33	-0.736	-0.407	_IQDK(gl)EGIPPDQQR_
UBA52	Ubiquitylation	K48	-0.062	0.315	_LIFAGK(gl)QLEDGRTLSDYNIQK_
UBA52	Phosphorylation	S57	1.909	0.548	_TLS(ph)DYNIQK_
UBA52	Ubiquitylation	K63	0.276	0.299	_TLSDYNIQK(gl)ESTLHLVLR_
UBA52	Ubiquitylation	K93	0.181	2.418	_YNCDK(gl)MICR_
UBA52	Ubiquitylation	K99	0.109	2.111	_VK(gl)LAVLK_
UBA52	Ubiquitylation	K104	0.674	2.102	_LAVLK(gl)YYK_
UBA52	Ubiquitylation	K107	2.949	3.611	_YYK(gl)VDENGK(gl)ISR_
UBA52	Ubiquitylation	K113	1.572	3.672	_YYK(gl)VDENGK(gl)ISR_
UBA52	Ubiquitylation	K152	4.747	4.970	_CCLTYCFNK(gl)PEDK_
UBA52	Ubiquitylation	K156	4.809		_CCLTYCFNKPEDK(gl)_