RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SEC61A1	2	1.170	-1.120				0.304	0.263
STIM1	2	0.060	-0.140				0.411	0.585
HSPA5	1	-0.670	0.310	-0.181	-0.208	0.339	-0.702	-0.192
SSR3	1	0.910	-0.680				1.598	0.778
KTN1	1	0.800	-1.010				0.287	0.430
ELOVL1	0	-0.180	0.140				0.818	-0.325
DERL2	0	1.140	0.560
TECR	0	0.220	-0.260				0.497	0.272
PIGU	0	-0.210	0.490				0.332	0.173
FKBP8	0	-1.260	1.670				-0.042	0.441
FKBP8	0	-1.260	1.670	-1.108	-0.333	-1.072
CREB3	0	0.180	-0.820
WFS1	0	-0.390	0.420				-0.793	-0.234
BNIP1	0	-0.940	0.840				0.333	0.290
SPCS1	0	0.420	-0.570				-1.094	-0.251
RTN4	0	0.530	-0.760		0.863		-1.844	-1.505
ELOVL4	0	-0.080	-0.230
PIGT	0	-0.980	1.680				0.580	0.500
RRBP1	0	0.260	-0.360				0.464	-0.153
RRBP1	0	0.260	-0.360				0.114	0.210
VIMP	0	0.490	-0.510					-2.036
SARAF	0	0.890	-0.810
DERL1	0	-1.430	2.460				0.446	0.355
RTN1	0	0.340	-0.340
SLC27A2	0	0.080	-0.710				0.200	1.382
PIGK	0	-1.290	1.770				0.701	0.445
MARCH6	0	0.380	-0.690
ABCB9	0	0.020	0.380
SAMD8	0	-1.010	1.870
AMFR	0	0.190	0.100				-0.357	-0.016
SGPL1	0	0.190	0.490		-0.430		0.606	0.394
DOLPP1	0	1.090	-0.180				0.416	0.345
DPAGT1	0	0.010	-0.380
ANKLE2	0							-0.021
DPM3	0	0.350	-0.390				0.453	0.384
ASPH	0	0.610	-0.900		-0.983	-0.025	0.915	0.710
TAP2	0	-0.940	1.130
SACM1L	0	-0.350	-0.230	0.343			0.947	0.537

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ABCB9	Ubiquitylation	K376		0.179	_ASNTAEETISAMK(gl)TVR_
AMFR	Phosphorylation	S523		0.058	_SDSIRPALNSPVERPSS(ph)DQEEGETSAQTER_
AMFR	Ubiquitylation	K573		0.073	_FSK(gl)SADER_
ANKLE2	Phosphorylation	S45		-1.255	_S(ph)GTPVPPPSAAAAPASGEMTMDALLAR_
ANKLE2	Phosphorylation	T47		-1.255	_S(ph)GTPVPPPSAAAAPASGEMTMDALLAR_
ANKLE2	Ubiquitylation	K90	-0.930	0.276	_AGLK(gl)CGPITSTTR_
ANKLE2	Phosphorylation	S268	-0.357	-0.123	_TSLPLS(ph)PVK_
ANKLE2	Ubiquitylation	K394	-0.254	0.046	_LMYPDDDEAMLQK(gl)R_
ANKLE2	Phosphorylation	S662	-0.222	-0.259	_NNS(ph)PPTVGAFGHTR_
BNIP1	Ubiquitylation	K48	-0.830		_VK(gl)EKFQQLR_
BNIP1	Ubiquitylation	K178	0.158		_TILDANEEFK(gl)SMSGTIQLGR_
CREB3	Ubiquitylation	K176		-0.114	_TEEQILK(gl)R_
DERL2	Ubiquitylation	K200		0.298	_ILK(gl)TPSILK_
DOLPP1	Ubiquitylation	K236		0.232	_KLGTK(gl)LQ_
DPAGT1	Ubiquitylation	K48	-0.796	0.883	_LCGQDLNK(gl)TSR_
DPAGT1	Ubiquitylation	K310		0.397	_LNIK(gl)TGK_
DPAGT1	Ubiquitylation	K313		0.255	_TGK(gl)LEMSYSK_
DPAGT1	Ubiquitylation	K320		0.794	_LEMSYSK(gl)FK_
DPAGT1	Ubiquitylation	K322		0.794	_LEMSYSK(gl)FK_
ELOVL1	Ubiquitylation	K275		-0.280	_ALQQNGAPGIAK(gl)VK_
ELOVL4	Ubiquitylation	K35		1.277	_WTWSIADK(gl)R_
FKBP8	Ubiquitylation	K217	-0.362	-0.356	_VK(gl)CLNNLAASQLK_
FKBP8	Ubiquitylation	K258		-0.292	_GK(gl)VLAQQGEYSEAIPILR_
FKBP8	Ubiquitylation	K278	-1.013	-0.590	_AALK(gl)LEPSNK_
FKBP8	Ubiquitylation	K284	-0.086		_LEPSNK(gl)TIHAELSK_
HSPA5	Ubiquitylation	K81		-0.455	_LIGDAAK(gl)NQLTSNPENTVFDAK(gl)R_
HSPA5	Ubiquitylation	K96	-0.392	-0.109	_NQLTSNPENTVFDAK(gl)R_
HSPA5	Ubiquitylation	K118		0.783	_FLPFK(gl)VVEK_
HSPA5	Ubiquitylation	K340		0.743	_STMK(gl)PVQK_
HSPA5	Ubiquitylation	K352	-0.469	0.822	_VLEDSDLK(gl)K_
HSPA5	Ubiquitylation	K353	-0.469		_VLEDSDLK(gl)K_
HSPA5	Ubiquitylation	K447		3.097	_NTVVPTKK(gl)_
HSPA5	Ubiquitylation	K523	-0.120	0.631	_NK(gl)ITITNDQNR_
KTN1	Phosphorylation	S75	1.178	0.666	_KEIQNGNLHES(ph)DSESVPR_
KTN1	Phosphorylation	T153	-0.616	-1.089	_VEPVPVTKQPT(ph)PPSEAAASK_
KTN1	Phosphorylation	S242		0.602	_TENVFVDEPLIHATTYIPLMDNADS(ph)SPVVDKR_
KTN1	Phosphorylation	S243		0.536	_TENVFVDEPLIHATTYIPLMDNADSS(ph)PVVDK_
KTN1	Ubiquitylation	K256	0.681		_EVIDLLK(gl)PDQVEGIQK_
KTN1	Ubiquitylation	K443	0.893		_DAVSNTTNQLESK(gl)QSAELNK_
KTN1	Ubiquitylation	K543	1.995		_LTDTLVSK(gl)QQLEQR_
KTN1	Ubiquitylation	K743	-0.534		_CIQEKDEK(gl)LK_
KTN1	Ubiquitylation	K777	-0.423	-0.237	_TENSSLTK(gl)EVQDLK_
KTN1	Ubiquitylation	K783		0.348	_EVQDLK(gl)AK_
KTN1	Ubiquitylation	K785	-0.101		_EVQDLKAK(gl)_
KTN1	Ubiquitylation	K842	0.819		_ALK(gl)EEIGNVQLEK_
KTN1	Ubiquitylation	K1173	0.578		_VKVDESHK(gl)TIK_
KTN1	Phosphorylation	S1313	0.446	0.503	_AAGDTTVIENSDVS(ph)PETESSEK_
MARCH6	Ubiquitylation	K49		0.818	_K(gl)EYCELCK_
MARCH6	Ubiquitylation	K56		0.608	_EYCELCK(gl)HR_
MARCH6	Ubiquitylation	K550		0.597	_QWLK(gl)GLVR_
MARCH6	Ubiquitylation	K881		0.319	_NDK(gl)YLVGQR_
MARCH6	Ubiquitylation	K894		-1.475	_K(gl)SGKQGSSPPPPQSSQE_
MARCH6	Ubiquitylation	K897		-1.475	_K(gl)SGKQGSSPPPPQSSQE_
PIGK	Ubiquitylation	K360		-0.653	_YAEQLPVAQIIHQKPK(gl)_
PIGT	Ubiquitylation	K79		0.791	_ALGQLISK(gl)YSLR_
PIGU	Ubiquitylation	K42		0.550	_VEVVSPLSSWK(gl)R_
RRBP1	Phosphorylation	S745	-0.844	-0.424	_NTDVAQS(ph)PEAPKQEAPAK_
RRBP1	Phosphorylation	S1406		-0.973	_SHVEDGDIAGAPAS(ph)SPEAPPAEQDPVQLK_
RRBP1	Phosphorylation	S1407	-1.170	-1.046	_SHVEDGDIAGAPASS(ph)PEAPPAEQDPVQLK_
RTN1	Phosphorylation	S352	0.946	0.948	_GSIS(ph)EDELITAIK_
RTN4	Phosphorylation	S7		-1.343	_(ac)MEDLDQS(ph)PLVSSSDS(ph)PPRPQPAFK_
RTN4	Phosphorylation	S11	-0.625	-0.783	_(ac)MEDLDQSPLVS(ph)SSDSPPRPQPAFK_
RTN4	Phosphorylation	S13		-0.816	_(ac)MEDLDQSPLVSSS(ph)DSPPRPQPAFK_
RTN4	Phosphorylation	S15	-0.846	-0.788	_(ac)M(ox)EDLDQS(ph)PLVSSSDS(ph)PPRPQPAFK_
RTN4	Phosphorylation	S107		-1.749	_GPLPAAPPVAPERQPS(ph)WDPSPVSSTVPAPSPLSAAAVSPSK_
RTN4	Phosphorylation	S181	-0.061	-0.102	_RRGS(ph)SGSVDETLFALPAASEPVIR_
RTN4	Phosphorylation	S184	0.143	0.327	_GSSGS(ph)VDETLFALPAASEPVIR_
RTN4	Phosphorylation	T188	0.091	0.389	_RGSSGSVDET(ph)LFALPAASEPVIR_
RTN4	Phosphorylation	T856	0.863	0.955	_ET(ph)ETFSDSSPIEIIDEFPTLISSK_
RTN4	Ubiquitylation	K1174		0.266	_NVK(gl)DAMAK_
SAMD8	Ubiquitylation	K66		0.144	_VLGDIK(gl)R_
SARAF	Ubiquitylation	K43		0.407	_DVK(gl)ALTLHYDR_
SARAF	Ubiquitylation	K79		-0.338	_CVGGTAGCDSYTPK(gl)VIQCQNK_
SARAF	Ubiquitylation	K86		0.513	_VIQCQNK(gl)GWDGYDVQWECK_
SARAF	Ubiquitylation	K109	-0.793	0.973	_FGK(gl)TVVSCEGYESSEDQYVLR_
SARAF	Ubiquitylation	K326		-0.313	_AYSPLHGGSGSYSVCSNSDTK(gl)TR_
SEC61A1	Ubiquitylation	K113		-0.118	_IIEVGDTPK(gl)DR_
SEC61A1	Ubiquitylation	K394		1.586	_TWIEVSGSSAK(gl)DVAK_
SEC61A1	Ubiquitylation	K398		0.253	_DVAK(gl)QLK_
SEC61A1	Ubiquitylation	K401	-1.030	0.553	_QLK(gl)EQQMVMR_
SEC61A1	Phosphorylation	S414		0.827	_ETS(ph)MVHELNR_
SGPL1	Ubiquitylation	K107	-0.060		_NMSFLK(gl)VDKEYVK_
SGPL1	Ubiquitylation	K131	0.668		_LK(gl)EYSSMDAFWQEGR_
SGPL1	Ubiquitylation	K228		-0.506	_DLAFEK(gl)GIK_
SGPL1	Ubiquitylation	K231		-0.506	_DLAFEK(gl)GIK_
SLC27A2	Ubiquitylation	K62		1.069	_AFLEK(gl)AR_
SLC27A2	Ubiquitylation	K390		-0.901	_VNYLQKK(gl)_
SLC27A2	Ubiquitylation	K419	-0.252	0.124	_VPK(gl)GEVGLLVCK_
SSR3	Ubiquitylation	K8	-0.566		_GSSK(gl)QQSEEDLLLQDFSR_
SSR3	Ubiquitylation	K98	-0.630	0.644	_REDAVSK(gl)EVTR_
STIM1	Phosphorylation	S257	2.583	2.199	_AEQS(ph)LHDLQER_
STIM1	Phosphorylation	S625	0.301	0.697	_DLTHS(ph)DSESSLHMSDR_
STIM1	Phosphorylation	S627		2.398	_DLTHSDS(ph)ESSLHMSDR_
STIM1	Phosphorylation	S681	-0.610	-1.215	_LPDS(ph)PALAK_
STIM1	Phosphorylation	S714	-0.114	-0.742	_AHSLM(ox)ELSPSAPPGGS(ph)PHLDSSR_
STIM1	Phosphorylation	S722	-1.253		_S(ph)HSPSSPDPDTPSPVGDSR_
STIM1	Phosphorylation	S724	-1.098	-1.197	_SHS(ph)PSSPDPDTPSPVGDSR_
STIM1	Phosphorylation	S773	-1.082		_AVAEEDNGSIGEETDS(ph)SPGR_
STIM1	Phosphorylation	S774	0.067		_KAVAEEDNGSIGEETDSS(ph)PGRK_
TAP2	Ubiquitylation	K246	-0.098	0.529	_QDLGFFQETK(gl)TGELNSR_
TAP2	Ubiquitylation	K357	-1.129	0.474	_YK(gl)EALEQCR_
TAP2	Ubiquitylation	K613		-1.176	_GSQLAAGQK(gl)QR_
TAP2	Ubiquitylation	K683		-0.236	_LQK(gl)LAQLQEGQDLYSR_
TECR	Ubiquitylation	K12		-0.345	_HYEVEILDAK(gl)TR_
TECR	Ubiquitylation	K224		-0.509	_DLRPAGSK(gl)TR_
TECR	Ubiquitylation	K291	-0.791	-0.675	_SYLK(gl)EFRDYPPLR_
VIMP	Ubiquitylation	K117	-2.952	-1.705	_AAAAVEPDVVVK(gl)R_
VIMP	Ubiquitylation	K190	-1.565	-1.157	_KPQEEDSPGPSTSSVLK(gl)R_
WFS1	Phosphorylation	S32	1.184	1.098	_LNATAS(ph)LEQER_
WFS1	Ubiquitylation	K143		0.703	_EAVK(gl)LLR_