RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
HSPA8	2	-0.640	0.320	0.616	0.207	0.569	0.697	0.187
CLTA	2	-0.050	0.210
CLTA	2	-0.050	0.210		-1.163	-0.046
DNM2	1	0.440	-0.080		1.049	-1.435	1.593	1.013
DNM2	1	0.440	-0.080	0.076
CLINT1	1	0.090	-0.140	-0.584			-0.316	0.083
FTH1	1	-0.230	0.610	2.863			0.755	1.309
FTH1	1	0.280	-0.310	2.863			0.755	1.309
EXOC5	0	-0.350	-0.130				0.176	0.799
AP1M1	0	-0.550	0.780				-0.171	-0.095
AP1M1	0	-0.550	0.780	0.192
STX7	0	0.300	-0.680				-0.634	0.302
FTL	0	1.010	-0.640				0.877	0.424
FTL	0	1.010	-0.640
SCFD1	0	-0.210	0.810	-0.210	0.253	0.724	0.114	0.376
SNAP23	0	0.830	-0.330				0.697	0.779
AP1B1	0	-0.890	1.670
AP1B1	0	-0.890	1.670	-0.267	0.203	0.287	0.311	0.233
AP1B1	0	-0.890	1.670				-1.575	-0.671
AP1B1	0	-0.890	1.670	0.931	0.543	0.034	0.611	0.276
STX4	0	1.010	-1.210				-0.201	-0.827
NAPA	0			0.479			0.251	0.740
SH3GL2	0	0.310	-0.450
GBF1	0	0.620	-0.640				-0.785	-0.409
DNAJC6	0	-0.240	-0.090
VAMP8	0	0.400	-0.770
VAMP7	0	0.400	0.320				0.660	-0.175
PUM1	0	-1.440	1.740	-0.867			-1.033	-0.052
ARRB1	0	0.960	-0.620
ARL3	0	0.820	-0.590
SCAMP2	0	-0.920	1.200				0.963	-0.915
CLTC	0	0.350	-0.220	-0.538	-0.243	-0.478	0.375	0.284
ARF1	0	0.020	0.040		0.702	-1.163
AP1G1	0	-0.070	-0.460	-0.071			0.366	0.385
AP1S2	0	1.190	-0.690	-1.049
VAMP2	0						0.418
VAMP2	0
TXNDC5	0	-0.390	0.840	0.683	1.407	0.087	0.669	0.412

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AP1B1	Ubiquitylation	K5	0.232	0.554	_(ac)TDSK(gl)YFTTTK_
AP1B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP1B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP1B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP1B1	Ubiquitylation	K860		-2.206	_LQSSNIFTVAK(gl)R_
AP1B1	Ubiquitylation	K899	-0.222	-0.751	_IQPGNPSCTLSLK(gl)CR_
AP1G1	Ubiquitylation	K385	1.119	0.748	_DLDVSIK(gl)R_
AP1G1	Ubiquitylation	K595	-0.570	-0.014	_AVEYNALFKK(gl)_
AP1M1	Ubiquitylation	K43		-0.691	_(ac)SASAVYVLDLK(gl)GK_
AP1M1	Ubiquitylation	K45		-0.691	_(ac)SASAVYVLDLK(gl)GK_
AP1M1	Ubiquitylation	K272	-0.542		_SK(gl)SVELEDVK_
AP1M1	Ubiquitylation	K280		-0.292	_SVELEDVK(gl)FHQCVR_
AP1M1	Ubiquitylation	K369	0.791	0.647	_FK(gl)TTVGSVK_
ARL3	Ubiquitylation	K9	0.216		_K(gl)LKSAPDQEVR_
ARL3	Ubiquitylation	K11	-0.579		_LK(gl)SAPDQEVR_
ARRB1	Phosphorylation	S412	0.138	0.253	_GMKDDKEEEEDGTGS(ph)PQLNNR_
CLINT1	Ubiquitylation	K6	0.944	0.734	_(ac)MLNMWK(gl)VR_
CLINT1	Ubiquitylation	K183		0.133	_SK(gl)WDEEWDKNK_
CLINT1	Ubiquitylation	K200	1.330	0.380	_SAFPFSDK(gl)LGELSDK_
CLINT1	Ubiquitylation	K207	0.681	0.218	_LGELSDK(gl)IGSTIDDTISK_
CLINT1	Ubiquitylation	K218	3.052	1.316	_IGSTIDDTISK(gl)FR_
CLINT1	Phosphorylation	S299	0.178	0.644	_TIDLGAAAHYTGDKAS(ph)PDQNASTHTPQSSVK_
CLINT1	Phosphorylation	T308	-0.947	-0.444	_ASPDQNASTHT(ph)PQSSVK_
CLINT1	Ubiquitylation	K314	0.979	-1.156	_ASPDQNASTHTPQSSVK(gl)TSVPSSK_
CLINT1	Ubiquitylation	K467	1.885	0.486	_SQNTDMVQK(gl)SVSK_
CLINT1	Ubiquitylation	K625	2.083	0.163	_QDAFANFANFSK(gl)_
CLTA	Phosphorylation	S105	1.262	1.599	_LQS(ph)EPESIRK_
CLTA	Ubiquitylation	K223	-0.282	0.457	_LCDFNPK(gl)SSK_
CLTA	Ubiquitylation	K226	-0.199	1.848	_LCDFNPKSSK(gl)_
CLTA	Ubiquitylation	K242	0.149		_SVLISLK(gl)QAPLVH_
CLTC	Ubiquitylation	K83	0.714		_VIALK(gl)AGK_
CLTC	Ubiquitylation	K86		0.631	_VIALKAGK(gl)_
CLTC	Ubiquitylation	K389	-1.051	-0.085	_VAANAPK(gl)GILR_
CLTC	Phosphorylation	T394	-0.123	0.181	_GILRT(ph)PDTIRR_
CLTC	Ubiquitylation	K506		0.267	_IVLYAK(gl)K_
CLTC	Ubiquitylation	K507	0.050	0.267	_IVLYAKK(gl)_
CLTC	Ubiquitylation	K619	-0.177	0.475	_AHIAQLCEK(gl)AGLLQR_
CLTC	Ubiquitylation	K737	-0.435	-0.298	_YIQAACK(gl)TGQIK_
CLTC	Ubiquitylation	K742	0.005	0.082	_TGQIK(gl)EVER_
CLTC	Ubiquitylation	K851		-0.859	_GQFSTDELVAEVEK(gl)R_
CLTC	Ubiquitylation	K911	-1.282		_YCEK(gl)RDPHLACVAYER_
CLTC	Ubiquitylation	K1118	-0.674	-0.765	_AQLQK(gl)GMVK_
CLTC	Ubiquitylation	K1209		-0.791	_CYDEK(gl)MYDAAK_
CLTC	Ubiquitylation	K1443	-2.089	-0.019	_VK(gl)QLPLVKPYLR_
CLTC	Ubiquitylation	K1449		-2.307	_QLPLVK(gl)PYLR_
CLTC	Ubiquitylation	K1516		-0.990	_IAAYLFK(gl)GNNR_
CLTC	Ubiquitylation	K1609	-0.714		_EYLTK(gl)VDKLDASESLR_
DNAJC6	Phosphorylation	S570	0.276	0.762	_RSATSTSAS(ph)PTLR_
DNM2	Ubiquitylation	K393	0.542		_EISYAIK(gl)NIHGVR_
DNM2	Phosphorylation	S764	-2.106	-1.205	_EALNIIGDISTSTVSTPVPPPVDDTWLQSASSHS(ph)PTPQR_
EXOC5	Ubiquitylation	K388	1.052		_SIGTGGIQDLK(gl)ER_
FTH1	Phosphorylation	S228		0.272	_MGAPESGLAEYLFDKHTLGDS(ph)DNES_
FTL	Ubiquitylation	K68		0.527	_LLK(gl)MQNQR_
GBF1	Ubiquitylation	K212	0.865	1.415	_NYVGTNMK(gl)K_
GBF1	Ubiquitylation	K606	0.112		_VLNSLTQQEKK(gl)_
GBF1	Ubiquitylation	K715	-0.719	1.164	_LLITGTEQFNQKPK(gl)_
GBF1	Phosphorylation	S1298	-0.288	-0.023	_ADAPDAGAQS(ph)DSELPSYHQNDVSLDR_
GBF1	Phosphorylation	S1300	-0.275	-0.056	_ADAPDAGAQSDS(ph)ELPSYHQNDVSLDR_
GBF1	Phosphorylation	T1317		0.742	_GYT(ph)SDSEVYTDHGRPGK_
GBF1	Phosphorylation	S1318	0.417	0.541	_GYTS(ph)DSEVYTDHGRPGK_
GBF1	Ubiquitylation	K1529		-0.652	_HLETGGQK(gl)IEADSR_
GBF1	Phosphorylation	S1773		-1.189	_TPGHPPPPEIPSELGACDFEKPES(ph)PR_
HSPA8	Ubiquitylation	K3	-0.324		_(ac)SK(gl)GPAVGIDLGTTYSCVGVFQHGK_
HSPA8	Ubiquitylation	K56	-0.260	1.224	_LIGDAAK(gl)NQVAMNPTNTVFDAK(gl)R_
HSPA8	Ubiquitylation	K71	0.041	1.713	_NQVAM(ox)NPTNTVFDAK(gl)R_
HSPA8	Ubiquitylation	K108	0.301	0.877	_VQVEYK(gl)GETK_
HSPA8	Ubiquitylation	K126	-0.071	0.472	_SFYPEEVSSMVLTK(gl)MK_
HSPA8	Ubiquitylation	K128	1.160	0.420	_MK(gl)EIAEAYLGK_
HSPA8	Ubiquitylation	K159	0.192	2.025	_QATK(gl)DAGTIAGLNVLR_
HSPA8	Ubiquitylation	K187		0.744	_IINEPTAAAIAYGLDK(gl)K_
HSPA8	Ubiquitylation	K188	-0.076	0.744	_IINEPTAAAIAYGLDKK(gl)_
HSPA8	Ubiquitylation	K319	0.026	-0.313	_GTLDPVEK(gl)ALR_
HSPA8	Ubiquitylation	K325	0.501	-0.341	_ALRDAK(gl)LDK_
HSPA8	Ubiquitylation	K328	-0.057	0.670	_LDK(gl)SQIHDIVLVGGSTR_
HSPA8	Ubiquitylation	K348	0.390	3.929	_IQK(gl)LLQDFFNGK_
HSPA8	Ubiquitylation	K357	0.339		_LLQDFFNGK(gl)ELNK_
HSPA8	Ubiquitylation	K451	0.095	0.846	_AMTK(gl)DNNLLGK_
HSPA8	Ubiquitylation	K497	0.354	0.667	_STGK(gl)ENKITITNDK_
HSPA8	Ubiquitylation	K500	0.066	1.038	_ENK(gl)ITITNDK_
HSPA8	Ubiquitylation	K507	-0.228	-0.104	_ITITNDK(gl)GR_
HSPA8	Ubiquitylation	K512	0.321	0.692	_LSK(gl)EDIER_
HSPA8	Ubiquitylation	K524	0.032	-0.180	_M(ox)VQEAEK(gl)YKAEDEKQR_
HSPA8	Ubiquitylation	K526	4.133	0.230	_MVQEAEKYK(gl)AEDEK_
HSPA8	Ubiquitylation	K531	1.093		_MVQEAEK(gl)YKAEDEK(gl)QR_
HSPA8	Ubiquitylation	K539	-0.121	0.409	_VSSK(gl)NSLESYAFNMK_
HSPA8	Ubiquitylation	K557		-0.270	_ATVEDEK(gl)LQGK_
HSPA8	Ubiquitylation	K597	0.282		_NQTAEKEEFEHQQK(gl)ELEK_
HSPA8	Ubiquitylation	K601	0.005	0.196	_ELEK(gl)VCNPIITK_
NAPA	Ubiquitylation	K153	-0.341		_AIAHYEQSADYYK(gl)GEESNSSANK_
PUM1	Ubiquitylation	K187	0.356	-0.507	_AMGEQLLPGKK(gl)_
PUM1	Phosphorylation	S745	0.731	0.490	_RDS(ph)LTGSSDLYK_
PUM1	Phosphorylation	T747	0.718		_RDSLT(ph)GSSDLYK_
PUM1	Ubiquitylation	K754	-0.441	0.520	_DSLTGSSDLYK(gl)R_
PUM1	Ubiquitylation	K830	-0.770	-0.249	_YISAAPGAEAK(gl)YR_
PUM1	Phosphorylation	S839		-0.915	_SASSASS(ph)LFSPSSTLFSSSR_
PUM1	Phosphorylation	S842	-0.409	-0.158	_SASSASSLFS(ph)PSSTLFSSSR_
PUM1	Ubiquitylation	K1001	-0.445		_ELDGHVLK(gl)CVK_
SCAMP2	Ubiquitylation	K95	0.037	0.189	_QQEELDRK(gl)AAELER_
SCFD1	Ubiquitylation	K126		0.085	_SK(gl)LEDIANAALAASAVTQVAK_
SCFD1	Phosphorylation	S297		-0.347	_VNLEES(ph)SGVENSPAGARPK_
SCFD1	Phosphorylation	S303	-0.307	-0.139	_VNLEESSGVENS(ph)PAGARPK_
SCFD1	Ubiquitylation	K541	-0.462	-0.990	_NLVLK(gl)QQNLPVTR_
SCFD1	Ubiquitylation	K642	-0.394		_QLSQLGQK(gl)_
SH3GL2	Ubiquitylation	K7		-0.268	_(ac)SVAGLK(gl)K_
SH3GL2	Ubiquitylation	K8	-0.654		_(ac)SVAGLKK(gl)_
SH3GL2	Ubiquitylation	K177	-0.477	0.450	_QGK(gl)IPDEELR_
SNAP23	Phosphorylation	S5	1.129	1.241	_(ac)M(ox)DNLS(ph)SEEIQQR_
SNAP23	Phosphorylation	S20	-0.626	0.740	_AHQITDES(ph)LESTRR_
SNAP23	Phosphorylation	S34		1.443	_ILGLAIES(ph)QDAGIK_
SNAP23	Ubiquitylation	K49	1.298	0.629	_TITMLDEQK(gl)EQLNR_
SNAP23	Ubiquitylation	K64	0.545		_IEEGLDQINK(gl)DMR_
SNAP23	Ubiquitylation	K71		0.995	_ETEK(gl)TLTELNK_
SNAP23	Ubiquitylation	K97	0.493	0.829	_NFESGK(gl)AYK_
SNAP23	Ubiquitylation	K100	0.095		_AYK(gl)TTWGDGGENSPCNVVSK_
SNAP23	Phosphorylation	S110	0.504	0.683	_TTWGDGGENS(ph)PCNVVSK_
SNAP23	Ubiquitylation	K185	-0.363		_DMALNIGNEIDAQNPQIK(gl)R_
STX4	Ubiquitylation	K54	-0.229		_QTIVK(gl)LGNK_
STX4	Ubiquitylation	K58	0.607	0.599	_LGNK(gl)VQELEK_
STX4	Ubiquitylation	K102	-0.242		_LQLK(gl)AIEPQKEEADENYNSVNTR_
STX4	Ubiquitylation	K108	0.674		_AIEPQK(gl)EEADENYNSVNTR_
STX7	Phosphorylation	S2	-0.818	0.074	_(ac)S(ph)YTPGVGGDPAQLAQR_
STX7	Phosphorylation	T4		0.208	_(ac)SYT(ph)PGVGGDPAQLAQR_
STX7	Ubiquitylation	K24	0.273	1.149	_ISSNIQK(gl)ITQCSVEIQR_
STX7	Ubiquitylation	K71	-1.063	-0.790	_ETDKYIK(gl)EFGSLPTTPSEQR_
STX7	Phosphorylation	T79	0.275	0.476	_EFGSLPTT(ph)PSEQR_
STX7	Phosphorylation	S125		0.381	_AS(ph)SRVS(ph)GSFPEDSSK_
STX7	Phosphorylation	S126	0.375	0.381	_ASS(ph)RVSGSFPEDSSK_
STX7	Phosphorylation	S129	0.553	0.627	_VS(ph)GSFPEDSSK_
STX7	Phosphorylation	S131		0.946	_VSGS(ph)FPEDSSK_
STX7	Ubiquitylation	K138	0.339	1.363	_VSGSFPEDSSK(gl)ER_
VAMP2	Ubiquitylation	K54	0.408	0.792	_VNVDK(gl)VLER_
VAMP2	Phosphorylation	S58	-0.407	0.612	_ADALQAGAS(ph)QFETSAAK_
VAMP2	Ubiquitylation	K61	0.558	0.387	_VLERDQK(gl)LSELDDR_
VAMP2	Phosphorylation	S63		0.374	_ADALQAGASQFETS(ph)AAK_
VAMP7	Ubiquitylation	K125	0.653	1.311	_GLDK(gl)VMETQAQVDELK_
VAMP7	Ubiquitylation	K137	0.694	1.092	_VMETQAQVDELK(gl)GIMVR_
VAMP7	Ubiquitylation	K172	0.306		_TENLVDSSVTFK(gl)TTSR_
VAMP8	Ubiquitylation	K47	0.262	0.420	_NK(gl)TEDLEATSEHFK_
VAMP8	Phosphorylation	S55	0.753	0.547	_NKTEDLEATS(ph)EHFK_
VAMP8	Ubiquitylation	K59	-0.052		_NKTEDLEATSEHFK(gl)TTSQK_