bioLOGIC-db

bioLOGIC Data

Query: SCFD1

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
SCFD1	0	1.312	-0.210	0.810	-0.210	0.253	0.724	0.114	0.376

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
SCFD1	Ubiquitylation	K126		0.085	_SK(gl)LEDIANAALAASAVTQVAK_
SCFD1	Phosphorylation	S303	-0.307	-0.139	_VNLEESSGVENS(ph)PAGARPK_
SCFD1	Phosphorylation	S297		-0.347	_VNLEES(ph)SGVENSPAGARPK_
SCFD1	Ubiquitylation	K541	-0.462	-0.990	_NLVLK(gl)QQNLPVTR_
SCFD1	Ubiquitylation	K642	-0.394		_QLSQLGQK(gl)_

ProteomicsDB-SCFD1 »

Protein-protein Interactions for SCFD1

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait ATP6AP2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait PDGFRA	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait RAB5C	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait TMED2	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait USO1	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait ZW10	Cat. description	Hein, Mann, Cell 2015
Category members	IP bait SEC22B	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait STX18	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait STX5	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait USE1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait VAMP4	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in SCFD1

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	Sec1-like	IPR001619	1.02

Protein complexes (CORUM database) featuring SCFD1

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)

Categories featuring SCFD1

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0005515	protein binding	Database	INF
Category members	DDR Literature	pubmedid:19647519	Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation		3.6
Category members	GO Category	GO:0015031	protein transport	Database	3.48
Category members	GO Category	GO:0047485	protein N-terminus binding	Database	1.84
Category members	GO Category	GO:0005789	endoplasmic reticulum membrane	Database	1.57
Category members	GO Category	GO:0005886	plasma membrane	Database	1.21
Category members	GO Category	GO:0016192	vesicle-mediated transport	Database	1.1
Category members	GO Category	GO:0006892	post-Golgi vesicle-mediated transport	Database	0.74
Category members	GO Category	GO:0006904	vesicle docking involved in exocytosis	Database	0.51
Category members	GO Category	GO:0005801	cis-Golgi network	Database	0.1
Category members	GO Category	GO:0019905	syntaxin binding	Database	0.05
Category members	GO Category	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	Database	0.05
Category members	GO Category	GO:0005798	Golgi-associated vesicle	Database	0.04
Category members	GO Category	GO:0001666	response to hypoxia	Database	0
Category members	GO Category	GO:0009636	response to toxic substance	Database	0
Category members	GO Category	GO:0017119	Golgi transport complex	Database	0
Category members	GO Category	GO:0032580	Golgi cisterna membrane	Database	0
Category members	GO Category	GO:0060628	regulation of ER to Golgi vesicle-mediated transport	Database	0