RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PICK1	1	-1.350	3.270
PICK1	1	-1.350	3.270	0.038			0.092	0.062
RAB6B	1	-1.790	3.450				0.752	0.721
RAB6B	1	-1.790	3.450		1.078	-1.682
RAB6B	1	-1.790	3.450				-0.345	0.336
TRAPPC12	1	-1.470	2.570
HTT	1	-0.200	-0.360	0.632			0.847	0.550
SCFD1	0	-0.210	0.810	-0.210	0.253	0.724	0.114	0.376
ARFGAP1	0	0.210	-0.220
ARFGAP1	0	0.210	-0.220
ARFGAP1	0	0.210	-0.220
COG4	0	0.050	0.840
COPE	0	-0.480	0.880	0.029	-0.141	-0.261	-1.241	-1.183
GBF1	0	0.620	-0.640				-0.785	-0.409
COPZ1	0				0.462	-0.105	-0.741
COPA	0			0.225	0.454	0.171	0.017	-0.104
COPB1	0			1.105	-0.061	-0.030	-0.190	-0.163
KIF1C	0	0.020	-0.310
COG3	0	1.060	-1.010
SCYL1	0	0.410	-0.530	0.944
ARF1	0	0.020	0.040		0.702	-1.163
RER1	0	0.680	-0.770
RER1	0	0.680	-0.770				0.454	0.389
TMED10	0	0.230	0.210
RAB6A	0	-1.080	1.980				0.752	0.721
RAB6A	0	-1.080	1.980		1.078	-1.682
COPG1	0			-1.084	0.565	0.191	-0.761	-0.214
COPB2	0			0.442	0.456	0.355	-0.100	-0.317

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARFGAP1	Phosphorylation	S37	0.390	0.076	_VS(ph)GQPQSVTASSDK_
ARFGAP1	Ubiquitylation	K74	0.390	0.746	_DIELEK(gl)MK_
ARFGAP1	Phosphorylation	S144	-0.169	-0.150	_TLPS(ph)M(ox)VHRVSGQPQSVTASSDK_
ARFGAP1	Phosphorylation	S150	0.394	0.096	_VS(ph)GQPQSVTASSDK_
ARFGAP1	Ubiquitylation	K226	-0.373		_FASAAK(gl)EGATK_
ARFGAP1	Ubiquitylation	K231		-0.415	_EGATK(gl)FGSQASQK_
ARFGAP1	Phosphorylation	S343	0.527	0.767	_S(ph)PSSDSWTCADTSTER_
COG3	Phosphorylation	S663		0.575	_LNS(ph)NNALIEFLLEGTPEIR_
COG4	Phosphorylation	S6	-0.321	-0.137	_(ac)ADLDS(ph)PPKLSGVQQPSEGVGGGR_
COG4	Ubiquitylation	K176		0.222	_QGK(gl)EGSMIDANLK_
COG4	Ubiquitylation	K196		0.787	_LK(gl)AIVAEK_
COG4	Ubiquitylation	K208	-0.540	0.572	_FAIATK(gl)EGDLPQVER_
COPA	Ubiquitylation	K4	0.360		_MLTK(gl)FETK_
COPA	Ubiquitylation	K46	-0.135		_MCTLIDK(gl)FDEHDGPVR_
COPA	Ubiquitylation	K169	-0.613		_K(gl)KNLSPGAVESDVR_
COPA	Ubiquitylation	K170	-0.613		_K(gl)KNLSPGAVESDVR_
COPA	Phosphorylation	S173	0.372	0.591	_NLS(ph)PGAVESDVR_
COPA	Ubiquitylation	K238	-0.248	0.174	_M(ox)NESK(gl)AWEVDTCR_
COPA	Ubiquitylation	K280		0.440	_VWDMSK(gl)R_
COPA	Ubiquitylation	K350	-0.803	-0.295	_QLDFNSSK(gl)DVAVMQLR_
COPA	Ubiquitylation	K411		-2.140	_DADSQNPDAPEGK(gl)R_
COPA	Ubiquitylation	K441	-1.204	-0.477	_NLK(gl)NEITK_
COPA	Ubiquitylation	K446	-1.464		_NLKNEITK(gl)K_
COPA	Ubiquitylation	K574	-0.649	0.517	_VK(gl)GNNVYCLDR_
COPA	Ubiquitylation	K598		0.427	_VLTIDPTEFK(gl)FK_
COPA	Ubiquitylation	K600	0.188		_VLTIDPTEFKFK(gl)_
COPA	Ubiquitylation	K721	-0.198		_MMK(gl)IAEIR_
COPA	Ubiquitylation	K825	-0.187		_GFFEGTIASK(gl)GK_
COPA	Ubiquitylation	K827	-0.512	0.105	_GFFEGTIASKGK(gl)_
COPA	Ubiquitylation	K988		-0.943	_NWK(gl)DAGLK_
COPA	Ubiquitylation	K993	0.298	-1.064	_DAGLK(gl)NGVPAVGLK_
COPA	Ubiquitylation	K1082		-0.397	_ETLEQQK(gl)R_
COPA	Ubiquitylation	K1184	-0.952	-1.020	_GKPVEK(gl)CPLSGACYSPEFK_
COPB1	Ubiquitylation	K107	-1.160		_K(gl)DLQHPNEFIR_
COPB1	Ubiquitylation	K712		-1.218	_EAADPLASK(gl)LNK_
COPB1	Ubiquitylation	K715	-1.285		_EAADPLASKLNK(gl)_
COPB1	Ubiquitylation	K876		-0.398	_STNMK(gl)CLTPEK_
COPB2	Phosphorylation	S859	-0.448	-0.489	_STAQQELDGKPAS(ph)PTPVIVASHTANKEEK_
COPB2	Phosphorylation	T861	-0.735	-0.376	_STAQQELDGKPASPT(ph)PVIVASHTANKEEK_
COPE	Phosphorylation	S10		-0.819	_APPAPGPAS(ph)GGSGEVDELFDVK_
COPE	Phosphorylation	S13	-0.447	-0.476	_APPAPGPASGGS(ph)GEVDELFDVK_
COPE	Ubiquitylation	K278	0.224	-0.715	_YLSQLK(gl)DAHR_
COPE	Ubiquitylation	K288	-0.446		_SHPFIK(gl)EYQAK_
COPG1	Ubiquitylation	K213	0.375		_LAVNK(gl)MISK_
COPG1	Ubiquitylation	K600	-1.517		_TESTPITAVK(gl)QPEK_
COPZ1	Ubiquitylation	K39	-0.856	0.058	_YYDDTYPSVK(gl)EQK_
COPZ1	Ubiquitylation	K42	-1.066	1.228	_YYDDTYPSVKEQK(gl)_
COPZ1	Ubiquitylation	K46	-1.607	0.461	_AFEK(gl)NIFNK_
COPZ1	Ubiquitylation	K51	-0.475	-1.280	_NIFNK(gl)THR_
COPZ1	Ubiquitylation	K193	-0.631	-0.012	_EQIK(gl)WSLLR_
GBF1	Ubiquitylation	K212	0.865	1.415	_NYVGTNMK(gl)K_
GBF1	Ubiquitylation	K606	0.112		_VLNSLTQQEKK(gl)_
GBF1	Ubiquitylation	K715	-0.719	1.164	_LLITGTEQFNQKPK(gl)_
GBF1	Phosphorylation	S1298	-0.288	-0.023	_ADAPDAGAQS(ph)DSELPSYHQNDVSLDR_
GBF1	Phosphorylation	S1300	-0.275	-0.056	_ADAPDAGAQSDS(ph)ELPSYHQNDVSLDR_
GBF1	Phosphorylation	T1317		0.742	_GYT(ph)SDSEVYTDHGRPGK_
GBF1	Phosphorylation	S1318	0.417	0.541	_GYTS(ph)DSEVYTDHGRPGK_
GBF1	Ubiquitylation	K1529		-0.652	_HLETGGQK(gl)IEADSR_
GBF1	Phosphorylation	S1773		-1.189	_TPGHPPPPEIPSELGACDFEKPES(ph)PR_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
KIF1C	Phosphorylation	S915	-1.166	-0.982	_MPSARPPS(ph)PPLSSWER_
PICK1	Ubiquitylation	K151	-1.211	-0.192	_AILCNDGLVK(gl)R_
PICK1	Ubiquitylation	K164		-0.429	_TAELYK(gl)GMTEHTK_
PICK1	Ubiquitylation	K219	-1.278		_SIEK(gl)FGIR_
RAB6A	Phosphorylation	S2	-0.159	-0.138	_(ac)S(ph)TGGDFGNPLRK_
RAB6A	Phosphorylation	T3	-0.614	-0.138	_(ac)ST(ph)GGDFGNPLR_
RAB6A	Ubiquitylation	K144	0.298	0.546	_EEAEK(gl)LSADCGMK_
RAB6A	Ubiquitylation	K180	-0.955		_DIYELIK(gl)K_
RAB6B	Phosphorylation	S2	-0.159	-0.138	_(ac)S(ph)TGGDFGNPLRK_
RAB6B	Phosphorylation	T3	-0.614	-0.138	_(ac)ST(ph)GGDFGNPLR_
RAB6B	Ubiquitylation	K144	0.298	0.546	_EEAEK(gl)LSADCGMK_
RAB6B	Ubiquitylation	K180	-0.955		_DIYELIK(gl)K_
RER1	Phosphorylation	S2	-0.044	0.742	_(ac)S(ph)EGDSVGESVHGKPSVVYR_
RER1	Phosphorylation	S6	0.895	0.285	_SEGDS(ph)VGESVHGKPSVVYR_
RER1	Ubiquitylation	K14	-0.247	0.708	_(ac)SEGDSVGESVHGK(gl)PSVVYR_
RER1	Phosphorylation	S95	-0.845	-0.673	_VDPSLM(ox)EDS(ph)DDGPSLPTK_
RER1	Phosphorylation	S100	-0.666	-1.017	_VDPSLM(ox)EDSDDGPS(ph)LPTK_
RER1	Ubiquitylation	K181	-0.541	-0.030	_YIPFTHGK(gl)R_
RER1	Ubiquitylation	K192	-0.019	0.483	_GKEDAGK(gl)AFAS_
SCFD1	Ubiquitylation	K126		0.085	_SK(gl)LEDIANAALAASAVTQVAK_
SCFD1	Phosphorylation	S297		-0.347	_VNLEES(ph)SGVENSPAGARPK_
SCFD1	Phosphorylation	S303	-0.307	-0.139	_VNLEESSGVENS(ph)PAGARPK_
SCFD1	Ubiquitylation	K541	-0.462	-0.990	_NLVLK(gl)QQNLPVTR_
SCFD1	Ubiquitylation	K642	-0.394		_QLSQLGQK(gl)_
SCYL1	Phosphorylation	S754		-0.053	_PSTQPRPDS(ph)WGEDNWEGLETDSR_
TMED10	Ubiquitylation	K146		-0.149	_NYEEIAK(gl)VEK_
TRAPPC12	Phosphorylation	S184	1.233	1.275	_SPS(ph)FGGASEASAR_
TRAPPC12	Phosphorylation	S290		-1.463	_GPQAAAPPASPEPFAHIQAVFAGS(ph)DDPFATALSMSEMDR_
TRAPPC12	Ubiquitylation	K354	-0.686		_FDNIQGDAVK(gl)DLMLR_
TRAPPC12	Ubiquitylation	K364	-2.695	-0.517	_FLGEK(gl)AAAK_