bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: COPG1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
COPG1 0 -0.928 -1.084 0.565 0.191 -0.761 -0.214

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
COPG1 Ubiquitylation K213 0.375 _LAVNK(gl)MISK_
COPG1 Ubiquitylation K600 -1.517 _TESTPITAVK(gl)QPEK_

Background Information for COPG1:


Pubmed-COPG1 »
Uniprot-COPG1 »
Biogrid-COPG1 »
ProteomicsDB-COPG1 »

Tumorportal-COPG1 »
COSMIC-COPG1 »
GenomeRNAi-COPG1 »
Genecards-COPG1


Protein-protein Interactions for COPG1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait COPA Cat. description Hein, Mann, Cell 2015
Category members IP bait SACM1L Cat. description Hein, Mann, Cell 2015


Protein Domains in COPG1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members ARM-type_fold IPR016024 9.26
Category members Coatomer_gsu_app_Ig-like-sub IPR013040 0.29
Category members Coatomer_gsu IPR017106 0.29
Category members Coatomer/clathrin_app_Ig-like IPR013041 0.18
Category members Clathrin/coatomer_adapt-like_N IPR002553 0
Category members Coatomer/calthrin_app_sub_C IPR009028 0


Protein complexes (CORUM database) featuring COPG1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring COPG1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0005488 binding Database 9.32
Category members GO Category GO:0006886 intracellular protein transport Database 2.48
Category members GO Category GO:0016192 vesicle-mediated transport Database 1.1
Category members GO Category GO:0005198 structural molecule activity Database 0.94
Category members GO Category GO:0005794 Golgi apparatus Database 0.27
Category members GO Category GO:0006890 retrograde vesicle-mediated transport, Golgi to ER Database 0.05
Category members GO Category GO:0000139 Golgi membrane Database 0
Category members GO Category GO:0030117 membrane coat Database 0
Category members GO Category GO:0030126 COPI vesicle coat Database 0
Category members GO Category GO:0048205 COPI coating of Golgi vesicle Database 0
Category members GO Category GO:0051683 establishment of Golgi localization Database 0


.

© Copyright Svejstrup Laboratory 2015