RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
AP3B1	1			0.283			0.568	0.447
AP2B1	0	0.890	-0.970
AP2B1	0	0.890	-0.970	-0.267	0.203	0.287	0.311	0.233
NCAPD2	0	-0.870	0.320	-0.142			-0.071	-0.184
AP3D1	0	-0.770	1.000
AP3D1	0	-0.770	1.000	-3.722			0.111	0.159
AP1B1	0	-0.890	1.670
AP1B1	0	-0.890	1.670	-0.267	0.203	0.287	0.311	0.233
AP1B1	0	-0.890	1.670				-1.575	-0.671
AP1B1	0	-0.890	1.670	0.931	0.543	0.034	0.611	0.276
COPB1	0			1.105	-0.061	-0.030	-0.190	-0.163
COPG2	0			-1.032	0.310	-0.500	-0.204	0.149
AP1G1	0	-0.070	-0.460	-0.071			0.366	0.385
COPG1	0			-1.084	0.565	0.191	-0.761	-0.214
AP2A2	0	-1.330	2.130	1.006	0.165	0.468	0.244	0.392
AP2A1	0	0.510	-1.060	0.414	0.086	0.168	-0.002	0.179
AP1G2	0	0.560	-0.680				0.454	1.062

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AP1B1	Ubiquitylation	K5	0.232	0.554	_(ac)TDSK(gl)YFTTTK_
AP1B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP1B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP1B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP1B1	Ubiquitylation	K860		-2.206	_LQSSNIFTVAK(gl)R_
AP1B1	Ubiquitylation	K899	-0.222	-0.751	_IQPGNPSCTLSLK(gl)CR_
AP1G1	Ubiquitylation	K385	1.119	0.748	_DLDVSIK(gl)R_
AP1G1	Ubiquitylation	K595	-0.570	-0.014	_AVEYNALFKK(gl)_
AP1G2	Ubiquitylation	K30		-0.209	_EVIQK(gl)ECAHIR_
AP2A1	Phosphorylation	S655		-1.574	_DPSSNDINGGM(ox)EPTPSTVSTPS(ph)PSADLLGLR_
AP2A1	Ubiquitylation	K880	-0.136		_WK(gl)QLSLPQQEAQK_
AP2A2	Ubiquitylation	K6	-0.477	0.972	_PAVSK(gl)GDGMR_
AP2A2	Ubiquitylation	K616	-0.123		_ESSILAKLK(gl)_
AP2A2	Ubiquitylation	K631	-0.267	-0.317	_KGPSTVTDLEDTK(gl)R_
AP2B1	Ubiquitylation	K5	0.145	0.310	_(ac)TDSK(gl)YFTTNK_
AP2B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP2B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP2B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP2B1	Ubiquitylation	K733		-0.273	_AVWLPAVK(gl)AK_
AP2B1	Ubiquitylation	K735	-0.839	-0.273	_AVWLPAVKAK(gl)_
AP3B1	Ubiquitylation	K74		3.486	_IVGM(ox)IAKGK(gl)_
AP3B1	Phosphorylation	S276	0.667	0.762	_NFYES(ph)DDDQKEK_
AP3D1	Ubiquitylation	K7	0.529	0.464	_MVK(gl)GSIDR_
AP3D1	Phosphorylation	S9		0.952	_MVKGS(ph)IDR_
AP3D1	Ubiquitylation	K379	0.803	0.640	_NLMEIVKK(gl)_
AP3D1	Phosphorylation	T735	0.260	-0.981	_NTET(ph)SKSPEKDVPM(ox)VEK_
AP3D1	Phosphorylation	S736	-0.691	-0.892	_NTETS(ph)KSPEKDVPM(ox)VEK_
AP3D1	Phosphorylation	S738	-0.194	-0.008	_NTETSKS(ph)PEKDVPMVEK_
COPB1	Ubiquitylation	K107	-1.160		_K(gl)DLQHPNEFIR_
COPB1	Ubiquitylation	K712		-1.218	_EAADPLASK(gl)LNK_
COPB1	Ubiquitylation	K715	-1.285		_EAADPLASKLNK(gl)_
COPB1	Ubiquitylation	K876		-0.398	_STNMK(gl)CLTPEK_
COPG1	Ubiquitylation	K213	0.375		_LAVNK(gl)MISK_
COPG1	Ubiquitylation	K600	-1.517		_TESTPITAVK(gl)QPEK_
COPG2	Ubiquitylation	K599	-1.112	-0.988	_AEITLVATK(gl)PEK_
NCAPD2	Ubiquitylation	K285		-0.722	_EIGQK(gl)CPQELSR_
NCAPD2	Ubiquitylation	K395		-0.161	_IVQQK(gl)ALPLTR_
NCAPD2	Ubiquitylation	K416		-0.459	_LADK(gl)SVLVCK_
NCAPD2	Ubiquitylation	K452	-1.412	-0.541	_LSDADLAGPLQK(gl)ETQK_
NCAPD2	Ubiquitylation	K456		0.266	_ETQK(gl)LQEMR_
NCAPD2	Phosphorylation	T586		0.016	_NPREST(ph)GNMVTGQTVCK_
NCAPD2	Ubiquitylation	K685		-1.049	_MLPLIWSK(gl)EPGVR_
NCAPD2	Ubiquitylation	K705	-1.261	-0.612	_QLYLNPK(gl)GDSAR_
NCAPD2	Ubiquitylation	K763		-0.693	_ATEK(gl)VACCPLER_
NCAPD2	Ubiquitylation	K904		-0.421	_QALEKLEEK(gl)R_
NCAPD2	Ubiquitylation	K1201		0.002	_DK(gl)QTESLVEK_
NCAPD2	Ubiquitylation	K1301		0.530	_GLDGIK(gl)ELEIGQAGSQR_
NCAPD2	Phosphorylation	S1333		0.844	_YQPLASTAS(ph)DNDFVTPEPR_
NCAPD2	Phosphorylation	T1339		-1.293	_YQPLASTASDNDFVT(ph)PEPR_