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Query: COPB1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
COPB1 0 0.263 1.105 -0.061 -0.030 -0.190 -0.163

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
COPB1 Ubiquitylation K876 -0.398 _STNMK(gl)CLTPEK_
COPB1 Ubiquitylation K712 -1.218 _EAADPLASK(gl)LNK_
COPB1 Ubiquitylation K107 -1.160 _K(gl)DLQHPNEFIR_
COPB1 Ubiquitylation K715 -1.285 _EAADPLASKLNK(gl)_

Background Information for COPB1:


Pubmed-COPB1 »
Uniprot-COPB1 »
Biogrid-COPB1 »
ProteomicsDB-COPB1 »

Tumorportal-COPB1 »
COSMIC-COPB1 »
GenomeRNAi-COPB1 »
Genecards-COPB1


Protein-protein Interactions for COPB1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait ASF1A Cat. description Hein, Mann, Cell 2015
Category members IP bait CEP250 Cat. description Hein, Mann, Cell 2015
Category members IP bait COPA Cat. description Hein, Mann, Cell 2015
Category members IP bait DENND6A Cat. description Hein, Mann, Cell 2015
Category members IP bait KCTD5 Cat. description Hein, Mann, Cell 2015
Category members IP bait LLGL1 Cat. description Hein, Mann, Cell 2015
Category members IP bait SACM1L Cat. description Hein, Mann, Cell 2015
Category members IP bait SGOL1 Cat. description Hein, Mann, Cell 2015
Category members IP bait TCF20 Cat. description Hein, Mann, Cell 2015
Category members IP bait TUBG1 Cat. description Hein, Mann, Cell 2015
Category members IP bait YWHAZ Cat. description Hein, Mann, Cell 2015
Category members IP bait COPG Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in COPB1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members ARM-type_fold IPR016024 9.26
Category members HEAT IPR000357 3.83
Category members Clathrin/coatomer_adapt-like_N IPR002553 0
Category members Coatomer_bsu_C IPR011710 0


Protein complexes (CORUM database) featuring COPB1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring COPB1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0005488 binding Database 9.32
Category members GO Category GO:0019048 modulation by virus of host morphology or physiology Database 7.81
Category members GO Category GO:0006886 intracellular protein transport Database 2.48
Category members GO Category GO:0005886 plasma membrane Database 1.21
Category members Pathway Pathway_474 REACTOME_MEMBRANE_TRAFFICKING 0 1.14
Category members GO Category GO:0016192 vesicle-mediated transport Database 1.1
Category members GO Category GO:0005198 structural molecule activity Database 0.94
Category members GO Category GO:0005793 endoplasmic reticulum-Golgi intermediate compartment Database 0.74
Category members GO Category GO:0005794 Golgi apparatus Database 0.27
Category members GO Category GO:0006891 intra-Golgi vesicle-mediated transport Database 0.1
Category members GO Category GO:0006890 retrograde vesicle-mediated transport, Golgi to ER Database 0.05
Category members GO Category GO:0005798 Golgi-associated vesicle Database 0.04
Category members Pathway Pathway_1272 REACTOME_COPI_MEDIATED_TRANSPORT 0 0
Category members GO Category GO:0000139 Golgi membrane Database 0
Category members GO Category GO:0030117 membrane coat Database 0
Category members GO Category GO:0030126 COPI vesicle coat Database 0
Category members GO Category GO:0030137 COPI-coated vesicle Database 0
Category members GO Category GO:0048205 COPI coating of Golgi vesicle Database 0


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