RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
INTS4	3	0.530	-0.910					-0.297
INTS4	3	0.860	-1.010					-0.297
INTS4	3	2.010	-0.320					-0.297
INTS4	3	2.710	-1.280					-0.297
INTS4	3	0.530	-0.910		1.942	2.387
INTS4	3	0.860	-1.010		1.942	2.387
INTS4	3	2.010	-0.320		1.942	2.387
INTS4	3	2.710	-1.280		1.942	2.387
CAND1	2	-0.720	0.390	-1.046	1.059	-0.316	0.107	0.156
KPNA6	1	-0.020	0.580
KPNA6	1	-0.020	0.580		0.537	0.237	0.200	0.316
KPNA6	1	-0.020	0.580
KPNA6	1	-0.020	0.580	-1.917
IPO5	1	-0.900	0.900		0.414	-0.283
IPO5	1	-0.900	0.900	-0.176			0.413	0.268
GCN1L1	1	1.290	-0.930	0.125	-0.510	0.357	0.076	0.016
PPP2R1A	1	-0.260	-0.200		0.714	0.973
PPP2R1A	1	-0.260	-0.200	-0.003			-0.196	0.057
PPP2R1A	1	-0.260	-0.200		1.697	1.450	-1.553
PPP2R1B	1	1.240	-0.730		1.697	1.450	-1.553
CAND2	1	-1.870	3.010					0.036
CLASP2	1				-1.110	-0.564
CLASP2	1						0.249	0.298
PIK3R4	1	1.400	-0.950	1.537			-1.555	0.077
KPNA5	1	2.680	-1.040		0.537	0.237	0.200	0.316
KPNA5	1	2.680	-1.040
KPNA5	1	2.680	-1.040	-0.148	-0.215	0.756	-0.024	-0.936
HTT	1	-0.200	-0.360	0.632			0.847	0.550
AP2B1	0	0.890	-0.970
AP2B1	0	0.890	-0.970	-0.267	0.203	0.287	0.311	0.233
CLASP1	0	-0.960	1.790				0.173	0.298
TNPO1	0	1.240	-0.920	-0.120	0.288	-0.034	0.255	-0.126
BTAF1	0	-1.110	2.110	1.142
AP1B1	0	-0.890	1.670
AP1B1	0	-0.890	1.670	-0.267	0.203	0.287	0.311	0.233
AP1B1	0	-0.890	1.670				-1.575	-0.671
AP1B1	0	-0.890	1.670	0.931	0.543	0.034	0.611	0.276
KPNA3	0	-0.380	0.240	0.631	-0.390	0.376	0.651	-0.147
TNPO2	0	0.810	-0.570	-1.224			-0.753	-0.446
BRAT1	0	0.480	0.160	-0.672
KPNB1	0	-1.100	2.030	0.513	-0.057	0.327	0.627	0.452
KPNA1	0	0.300	-0.080	-0.148	-0.215	0.756	-0.024	-0.936
COPB1	0			1.105	-0.061	-0.030	-0.190	-0.163
KIAA1468	0	1.050	-0.820
RANBP6	0	-0.110	-0.020		0.414	-0.283
RANBP6	0	-0.110	-0.020					0.339
RPTOR	0	0.520	-1.030				0.623	0.466
SCYL1	0	0.410	-0.530	0.944
PPP4R1	0	0.530	-0.450
DNAAF5	0	-0.090	0.240	-0.708			-0.024	0.345
CKAP5	0			0.237	-1.027	-0.242	-0.255	-0.192
KPNA4	0	-1.040	1.330	0.120	0.353	1.216	0.409	0.301
IPO4	0	0.430	-0.280		-0.094	-0.970
IPO4	0	0.430	-0.280	-0.546				0.242

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AP1B1	Ubiquitylation	K5	0.232	0.554	_(ac)TDSK(gl)YFTTTK_
AP1B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP1B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP1B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP1B1	Ubiquitylation	K860		-2.206	_LQSSNIFTVAK(gl)R_
AP1B1	Ubiquitylation	K899	-0.222	-0.751	_IQPGNPSCTLSLK(gl)CR_
AP2B1	Ubiquitylation	K5	0.145	0.310	_(ac)TDSK(gl)YFTTNK_
AP2B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP2B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP2B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP2B1	Ubiquitylation	K733		-0.273	_AVWLPAVK(gl)AK_
AP2B1	Ubiquitylation	K735	-0.839	-0.273	_AVWLPAVKAK(gl)_
BRAT1	Ubiquitylation	K507	1.058	-1.843	_ELFPVLQK(gl)R_
BRAT1	Phosphorylation	T581		1.274	_ASAVTAMGQLSSQGLHAPT(ph)SPEHAEAR_
BRAT1	Phosphorylation	S582		1.370	_ASAVTAMGQLSSQGLHAPTS(ph)PEHAEAR_
BRAT1	Ubiquitylation	K729		-1.711	_DK(gl)IASYSSLR_
BRAT1	Phosphorylation	S742	1.211	0.349	_GS(ph)PNTASAEATLPR_
BTAF1	Ubiquitylation	K314	0.577	0.385	_EILK(gl)AHGK_
CAND1	Ubiquitylation	K51	0.633		_VVK(gl)MILK_
CAND1	Ubiquitylation	K60	0.342	0.471	_LLEDK(gl)NGEVQNLAVK_
CAND1	Ubiquitylation	K355	1.318	1.197	_AAAK(gl)CLDAVVSTR_
CAND1	Ubiquitylation	K574	0.835	1.669	_DLFTCTIK(gl)R_
CAND1	Ubiquitylation	K577	0.292	0.893	_LK(gl)AADIDQEVKER_
CAND1	Ubiquitylation	K826	1.544		_EGPAVVGQFIQDVK(gl)NSR_
CAND2	Ubiquitylation	K588	0.359	-1.783	_ATDLDQEVK(gl)ER_
CKAP5	Ubiquitylation	K1075	1.056		_DQVLAMLEK(gl)AK_
CKAP5	Ubiquitylation	K1077	1.056		_DQVLAMLEK(gl)AK_
CLASP1	Phosphorylation	S598	0.439	0.280	_S(ph)RSDIDVNAAASAK_
CLASP1	Phosphorylation	S600	0.501	0.771	_SRS(ph)DIDVNAAASAK_
CLASP1	Phosphorylation	S636	-0.434		_VSSSSGTTPFSSAAALPPGSYAS(ph)LGR_
CLASP1	Phosphorylation	S646	0.212	0.217	_RQS(ph)SGSATNVASTPDNR_
CLASP1	Phosphorylation	S797	0.478	0.348	_VLSTS(ph)TDLEAAVADALK_
CLASP1	Phosphorylation	S1091	0.125	-0.316	_NSSNTSVGS(ph)PSNTIGR_
CLASP1	Phosphorylation	S1196	0.643	0.634	_S(ph)QEDLNEPIKR_
CLASP2	Phosphorylation	S241	0.318	0.351	_DKS(ph)FDDEESVDGNRPSSAASAFK_
CLASP2	Phosphorylation	S560	0.651	0.296	_SSSSS(ph)QESLNRPFSSK_
CLASP2	Phosphorylation	S593	-0.339	0.138	_ASS(ph)LPGSLQR_
CLASP2	Phosphorylation	S601	1.688		_S(ph)RSDIDVNAAAGAK_
CLASP2	Phosphorylation	S603	0.514	0.132	_SRS(ph)DIDVNAAAGAK_
CLASP2	Phosphorylation	S758	-0.210	0.330	_IPRPSVS(ph)QGCSR_
CLASP2	Phosphorylation	S762	0.315	0.366	_IPRPSVSQGCS(ph)R_
CLASP2	Phosphorylation	T806	0.762		_VLNT(ph)GSDVEEAVADALK_
CLASP2	Phosphorylation	S808	0.347	0.264	_VLNTGS(ph)DVEEAVADALK_
CLASP2	Phosphorylation	S1264		0.155	_EAMFDDDADQFPDDLS(ph)LDHSDLVAELLK_
CLASP2	Phosphorylation	S1268		0.155	_EAMFDDDADQFPDDLS(ph)LDHSDLVAELLK_
CLASP2	Ubiquitylation	K1425	1.196	0.967	_MQTK(gl)VIER_
COPB1	Ubiquitylation	K107	-1.160		_K(gl)DLQHPNEFIR_
COPB1	Ubiquitylation	K712		-1.218	_EAADPLASK(gl)LNK_
COPB1	Ubiquitylation	K715	-1.285		_EAADPLASKLNK(gl)_
COPB1	Ubiquitylation	K876		-0.398	_STNMK(gl)CLTPEK_
DNAAF5	Ubiquitylation	K43	-1.230	-0.630	_LLPGLEADSK(gl)PGR_
DNAAF5	Ubiquitylation	K750		-0.820	_IYPELLK(gl)R_
DNAAF5	Ubiquitylation	K780		-0.504	_GANAK(gl)SYYQSSVQYLYR_
GCN1L1	Ubiquitylation	K12	0.453	0.104	_(ac)AADTQVSETLK(gl)R_
GCN1L1	Ubiquitylation	K308		-0.980	_GLAGHLK(gl)SNSPR_
GCN1L1	Ubiquitylation	K695		-0.495	_MK(gl)IDPEAFITR_
GCN1L1	Ubiquitylation	K788	-0.424		_SIIQSAQQDSIK(gl)K_
GCN1L1	Ubiquitylation	K789	0.255	-0.354	_SIIQSAQQDSIKK(gl)_
GCN1L1	Ubiquitylation	K829	0.801	-0.151	_GIKEEVQLTSK(gl)QK_
GCN1L1	Ubiquitylation	K1395		-0.248	_K(gl)GAAYGLAGLVK_
GCN1L1	Ubiquitylation	K1514		-1.429	_TK(gl)AGSVELLGAMAYCAPK_
GCN1L1	Ubiquitylation	K1556	0.235		_LTEVLTDSHVKVQK(gl)_
GCN1L1	Ubiquitylation	K1679	1.567	-0.083	_TVSAK(gl)ALGAMVK_
GCN1L1	Ubiquitylation	K2183	2.095	0.580	_SK(gl)ADYTSHLR_
GCN1L1	Ubiquitylation	K2280		-0.810	_EGVLTGSPEQK(gl)EEAAK_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
IPO4	Ubiquitylation	K788	-0.781	-1.033	_SCGTLTLK(gl)PPGR_
IPO5	Ubiquitylation	K436	0.087		_YAACNAVGQMATDFAPGFQK(gl)K_
IPO5	Ubiquitylation	K437	0.087		_YAACNAVGQMATDFAPGFQK(gl)K_
IPO5	Ubiquitylation	K548	1.682		_HIVENAVQK(gl)ELR_
IPO5	Ubiquitylation	K613	0.602	0.935	_MCK(gl)ILGK_
IPO5	Ubiquitylation	K678	1.124		_TAGLEEK(gl)STACQMLVCYAK_
IPO5	Ubiquitylation	K712		-0.098	_LMVPLLK(gl)_
IPO5	Ubiquitylation	K963	-0.210		_TK(gl)ENVNATENCISAVGK_
KIAA1468	Phosphorylation	S56	0.941	0.359	_LGAGSGLDPGSAGSLS(ph)PQDPVALGSSAR_
KIAA1468	Phosphorylation	S180	0.489	0.793	_AGS(ph)ISTLDSLDFAR_
KIAA1468	Phosphorylation	S453	-0.773	0.078	_ENS(ph)PNSFPR_
KPNA1	Ubiquitylation	K46	-0.562	-0.121	_EEQLFK(gl)R_
KPNA3	Phosphorylation	S56		0.255	_NVPQEES(ph)LEDSDVDADFK_
KPNA3	Phosphorylation	S60	0.014	0.081	_RNVPQEESLEDS(ph)DVDADFK_
KPNA5	Phosphorylation	S3	0.542	0.054	_(ac)AS(ph)PGKDNYR_
KPNA5	Ubiquitylation	K46	-0.562	-0.121	_EEQLFK(gl)R_
KPNA6	Phosphorylation	S3	0.542	0.054	_(ac)AS(ph)PGKDNYR_
KPNA6	Phosphorylation	T3		0.131	_(ac)M(ox)ET(ph)MASPGKDNYR_
KPNA6	Ubiquitylation	K6	-0.649		_(ac)ASPGK(gl)DNYR_
KPNA6	Phosphorylation	S6	0.450	0.219	_(ac)METMAS(ph)PGKDNYR_
KPNA6	Ubiquitylation	K9	-0.089	-0.978	_(ac)METMASPGK(gl)DNYR_
KPNA6	Ubiquitylation	K18	0.241		_SYK(gl)NNALNPEEMRR_
KPNA6	Ubiquitylation	K49	0.560	0.382	_EQQLFK(gl)R_
KPNA6	Ubiquitylation	K134	-0.179	-0.102	_FVEFLK(gl)R_
KPNA6	Ubiquitylation	K354	1.760	0.347	_K(gl)EACWTISNITAGNR_
KPNB1	Ubiquitylation	K68	0.403	0.420	_NSLTSK(gl)DPDIK_
KPNB1	Ubiquitylation	K73		-0.134	_NSLTSKDPDIK(gl)AQYQQR_
KPNB1	Ubiquitylation	K211	-0.036		_ANFDK(gl)ESER_
KPNB1	Ubiquitylation	K549	-0.563		_DCYPAVQK(gl)TTLVIMER_
KPNB1	Ubiquitylation	K835	-0.212	0.450	_DVLK(gl)LVEAR_
KPNB1	Ubiquitylation	K859		0.118	_AK(gl)TLATWATK_
KPNB1	Ubiquitylation	K867	0.636	1.498	_TLATWATK(gl)ELR_
PPP2R1A	Ubiquitylation	K34	0.304		_K(gl)LSTIALALGVER_
PPP2R1A	Ubiquitylation	K107	0.584	0.441	_DK(gl)AVESLR_
PPP2R1A	Ubiquitylation	K163	0.106	0.149	_VSSAVK(gl)AELR_
PPP2R1A	Ubiquitylation	K175		-0.351	_ASNAVK(gl)AEIR_
PPP2R1A	Ubiquitylation	K188	0.395	0.130	_AAASK(gl)LGEFAK_
PPP2R1A	Ubiquitylation	K255	0.301	0.202	_QAAEDK(gl)SWR_
PPP2R1A	Ubiquitylation	K266	0.464	0.338	_YMVADK(gl)FTELQK_
PPP2R1A	Ubiquitylation	K284		-0.575	_FSELQK(gl)AMGPK_
PPP2R1A	Ubiquitylation	K307	0.224	0.500	_VK(gl)EFCENLSADCR_
PPP2R1A	Ubiquitylation	K467		0.890	_EAATSNLK(gl)K_
PPP2R1A	Ubiquitylation	K468		0.890	_EAATSNLK(gl)K_
PPP2R1A	Ubiquitylation	K542		-0.187	_FNVAK(gl)SLQK_
PPP2R1B	Ubiquitylation	K175		-0.351	_ASNAVK(gl)AEIR_
PPP2R1B	Ubiquitylation	K284		-0.575	_FSELQK(gl)AMGPK_
PPP4R1	Ubiquitylation	K887	0.143		_VLLAK(gl)TLR_
RANBP6	Ubiquitylation	K1067		-0.180	_INETINYEDPCAK(gl)R_
RPTOR	Phosphorylation	S722	0.393	1.196	_SVSS(ph)YGNIR_
RPTOR	Phosphorylation	T857	-0.348		_VLDTSSLT(ph)QSAPAS(ph)PTNK_
RPTOR	Phosphorylation	S859	-0.462	-0.346	_VLDTSSLTQS(ph)APASPT(ph)NK_
RPTOR	Phosphorylation	S863	-0.208	-0.001	_VLDTSSLTQS(ph)APAS(ph)PTNK_
RPTOR	Phosphorylation	T865		-0.317	_VLDTSSLTQS(ph)APASPT(ph)NK_
RPTOR	Phosphorylation	S877	-0.114	-0.074	_GVHIHQAGGS(ph)PPASSTSSSSLTNDVAK_
RPTOR	Ubiquitylation	K1008		-0.329	_QAQQVIQK(gl)GITR_
SCYL1	Phosphorylation	S754		-0.053	_PSTQPRPDS(ph)WGEDNWEGLETDSR_
TNPO1	Ubiquitylation	K66		0.261	_LK(gl)SEDEPTR_
TNPO1	Ubiquitylation	K81	0.303	0.468	_SLSGLILK(gl)NNVK_